RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13529
(75 letters)
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 45.0 bits (105), Expect = 9e-08
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
A+ G L I++ +R N + TP AA G+ E + L+
Sbjct: 7 ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 56
Score = 38.0 bits (87), Expect = 3e-05
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLL 71
AAQ G DI+ K N DG TP A G + +L
Sbjct: 337 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 382
Score = 36.9 bits (84), Expect = 7e-05
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKRDC--NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA+ G + + +RD NA ++G+TP A NL+ ++LL+ RG
Sbjct: 139 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 188
Score = 36.5 bits (83), Expect = 8e-05
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
AA+ G ++ + + NAK +D TP AA G+ ++LL+
Sbjct: 40 AARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL 86
Score = 36.5 bits (83), Expect = 9e-05
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 45 CNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
NAK + G +P AA QG+ + + LL+ G
Sbjct: 323 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 353
Score = 31.9 bits (71), Expect = 0.003
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 53 MTPTLWAAFQGNLEALRLLVGRG 75
+TP A+F G+L ++ L+ RG
Sbjct: 1 LTPLHVASFMGHLPIVKNLLQRG 23
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 41.5 bits (96), Expect = 1e-06
Identities = 16/54 (29%), Positives = 21/54 (38%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
L+L G++ L E + N D DG T L A + LL RG
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276
Score = 33.0 bits (74), Expect = 0.002
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D N + E G TP + A + +L ++ L+ +
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242
Score = 32.6 bits (73), Expect = 0.002
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 27 RAAQDGMLDILREATKR--DCNAKD-EDGMTPTLWAAFQGNLEALRL 70
+A Q+ +D++++ + + N ++ E G TP A + + L
Sbjct: 11 KAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL 57
Score = 30.7 bits (68), Expect = 0.008
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 45 CNAKDEDGMTPTLWAAFQGNLEALRLLVGR 74
+ G T + AA +G++E L++L+
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDE 170
Score = 26.1 bits (56), Expect = 0.36
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 51 DGMTPTLWAAFQGNLEALRLLVGRG 75
+ + A +++ ++ L+ G
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGG 28
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 41.3 bits (95), Expect = 2e-06
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLL 71
AAQ+G ++++ ++ A D T A + + +
Sbjct: 228 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273
Score = 40.1 bits (92), Expect = 4e-06
Identities = 10/49 (20%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 28 AAQDGMLDILREATKRDCNAKD-EDGMTPTLWAAFQGNLEALRLLVGRG 75
G I T+ N D T W A + E L+
Sbjct: 8 TEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHE 56
Score = 36.6 bits (83), Expect = 8e-05
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 45 CNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ +DEDG TP + AA +G +E + L+ +G
Sbjct: 214 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 244
Score = 24.3 bits (51), Expect = 1.9
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 10/49 (20%)
Query: 28 AAQDGMLDILREATKR----------DCNAKDEDGMTPTLWAAFQGNLE 66
A + + + D NA D D TP + A
Sbjct: 40 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 88
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 40.5 bits (93), Expect = 3e-06
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 29 AQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ +L K D A+ G TP A + N RLL G
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248
Score = 37.4 bits (85), Expect = 4e-05
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
EDG T A + L L+G
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFS 32
Score = 32.8 bits (73), Expect = 0.001
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 5/43 (11%)
Query: 28 AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNL 65
A L A + +++ G T AA G
Sbjct: 16 AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 39.4 bits (90), Expect = 6e-06
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVG 73
D + +D G+TP A +G + + +L G
Sbjct: 125 DLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 24.4 bits (51), Expect = 1.4
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 57 LWAAFQGNLEALRLLVGRG 75
AA +G+++ +R L+ R
Sbjct: 7 SGAAARGDVQEVRRLLHRE 25
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 39.1 bits (89), Expect = 7e-06
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 45 CNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
++ G T A G E + L+ G
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQANG 156
Score = 27.2 bits (58), Expect = 0.15
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 58 WAAFQGNLEALRLLVGRG 75
AA +G+LE L L+
Sbjct: 7 SAAARGDLEQLTSLLQNN 24
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 39.3 bits (90), Expect = 8e-06
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 37 LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
L+ NA+D +G T AA GN+ + L+ G
Sbjct: 244 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 282
Score = 36.2 bits (82), Expect = 1e-04
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 33 MLDILREATKRDCNAK-DEDGMTPTLWAAFQGNLEALRLLVGRG 75
++ T+ + N DE G TP W NLE ++ LV G
Sbjct: 87 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG 130
Score = 28.1 bits (61), Expect = 0.069
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAA 60
AA+ G + I+ D ++ G+ P + A
Sbjct: 266 AARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 38.3 bits (87), Expect = 2e-05
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALR 69
A+ G+L ++R + D + K+ TP + A + ++ LR
Sbjct: 184 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227
Score = 34.8 bits (78), Expect = 3e-04
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 50 EDGMTPTLWAAFQGNLEALRLLV 72
EDG TP A QGNL A+ LV
Sbjct: 1 EDGDTPLHIAVVQGNLPAVHRLV 23
Score = 28.3 bits (61), Expect = 0.072
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 6/41 (14%)
Query: 28 AAQDGMLDILRE------ATKRDCNAKDEDGMTPTLWAAFQ 62
A G L + R+ + + TP A
Sbjct: 10 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50
Score = 26.0 bits (55), Expect = 0.41
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 45 CNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
NA+ G + A+ +G L +R LV G
Sbjct: 170 VNAQMYSGSSALHSASGRGLLPLVRTLVRSG 200
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 37.8 bits (86), Expect = 2e-05
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLL 71
+ D P A+ + + + +RLL
Sbjct: 181 NREITDHMDRLPRDVASERLHHDIVRLL 208
Score = 34.0 bits (76), Expect = 5e-04
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 44 DCNAK-DEDGMTPTLWAAFQGNLEALRLL 71
+ NA D+ G T AA +A + L
Sbjct: 14 ELNATMDKTGETSLHLAARFARADAAKRL 42
Score = 23.2 bits (48), Expect = 4.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 44 DCNAKDEDGMTPTLWAAFQGN 64
D NA D G T WAA N
Sbjct: 115 DINAADNSGKTALHWAAAVNN 135
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 37.6 bits (85), Expect = 3e-05
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D N G +P + + + L
Sbjct: 170 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 201
Score = 29.5 bits (64), Expect = 0.027
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 6/38 (15%)
Query: 28 AAQDGMLDILREATKR------DCNAKDEDGMTPTLWA 59
A + E ++ N ++ TP A
Sbjct: 9 AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46
Score = 28.3 bits (61), Expect = 0.062
Identities = 3/22 (13%), Positives = 6/22 (27%)
Query: 51 DGMTPTLWAAFQGNLEALRLLV 72
DG + A ++
Sbjct: 1 DGDSFLHLAIIHEEKALTMEVI 22
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory
subunit 10, gankyrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 223
Score = 36.9 bits (84), Expect = 5e-05
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 27 RAAQDGMLDILRE---ATKRDCNAKDEDGMTPTLWAAFQGN 64
A G L+ L+E A K D+D T WA G+
Sbjct: 9 NLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGH 49
Score = 31.1 bits (69), Expect = 0.007
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
++++ TP L A G L+ +V
Sbjct: 194 SIYIENKEEKTP-LQVAKGGLGLILKRMV 221
Score = 26.5 bits (57), Expect = 0.28
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 45 CNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
N +D +G TP A + +E +LLV +G
Sbjct: 162 TNIQDTEGNTPLHLACDEERVEEAKLLVSQG 192
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 36.8 bits (83), Expect = 5e-05
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLL 71
D + + + T + GN + +L
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 31.0 bits (68), Expect = 0.006
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 51 DGMTPTLWAAFQGNLEALRLLVGRG 75
D L AA G + +R+L+ G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANG 25
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 37.2 bits (85), Expect = 5e-05
Identities = 13/53 (24%), Positives = 15/53 (28%), Gaps = 5/53 (9%)
Query: 28 AAQDG---MLDILREATKRDC--NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
AA G LD L D + AA G+L L L
Sbjct: 97 AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA 149
Score = 33.3 bits (75), Expect = 0.001
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 7/53 (13%)
Query: 27 RAAQDGMLDILREATKRDC-------NAKDEDGMTPTLWAAFQGNLEALRLLV 72
R + +LD +R D A GN A LL+
Sbjct: 285 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 337
Score = 29.5 bits (65), Expect = 0.024
Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 28 AAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+ DG+ D++ + + + + + L+ +R L+
Sbjct: 259 SNPDGVFDLV----TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 302
Score = 29.1 bits (64), Expect = 0.037
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLL 71
D + K AA G AL L
Sbjct: 82 DAHKKGIKSEVICFVAAITGCSSALDTL 109
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory
subunit 10, gankyrin {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 229
Score = 36.0 bits (81), Expect = 1e-04
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 27 RAAQDGMLDILR---EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+A + ++ + KD+DG P W+ E L+ +
Sbjct: 6 QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57
Score = 29.0 bits (63), Expect = 0.042
Identities = 6/43 (13%), Positives = 12/43 (27%), Gaps = 3/43 (6%)
Query: 33 MLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+L E + + D G A N + + +
Sbjct: 187 AAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNV 226
Score = 24.8 bits (52), Expect = 1.0
Identities = 3/22 (13%), Positives = 7/22 (31%)
Query: 54 TPTLWAAFQGNLEALRLLVGRG 75
P A + ++ L+
Sbjct: 2 YPLHQACMENEFFKVQELLHSK 23
Score = 24.8 bits (52), Expect = 1.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 45 CNAKDEDGMTPTLWAAFQGNLEALRLLVGR 74
N +D+ G TP A +G+ +A LLV +
Sbjct: 165 VNWQDKQGWTPLFHALAEGHGDAAVLLVEK 194
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 35.9 bits (81), Expect = 1e-04
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
D N KD DG TP AA G EA R+LV
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255
Score = 35.5 bits (80), Expect = 2e-04
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 27 RAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNL 65
A G + + +R D N + DG+T A N+
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNV 86
Score = 30.5 bits (67), Expect = 0.011
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 51 DGMTPTLWAAFQGNLEALRLLVGRG 75
D L A G+ E + L+ RG
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERG 63
Score = 27.8 bits (60), Expect = 0.090
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAA 60
AA G + R + D A ++ G T A
Sbjct: 239 AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 30.7 bits (68), Expect = 0.007
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 45 CNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
+E G TP A + LL
Sbjct: 107 IEIANESGETPLDIAKRLKHEHCEELLTQAL 137
Score = 22.6 bits (47), Expect = 6.5
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 11/60 (18%)
Query: 27 RAAQDGMLDILREA--------TKRDCNAKDEDGMTPTLWAAF---QGNLEALRLLVGRG 75
A + + L +A K E T A + +L + LV
Sbjct: 12 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS 71
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 29.9 bits (65), Expect = 0.014
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 45 CNAKDEDGMTPTLWAAFQGNLEALRLL 71
+ +D G P A G+ + R L
Sbjct: 95 LDVRDAWGRLPVDLAEELGHRDVARYL 121
Score = 27.6 bits (59), Expect = 0.11
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 50 EDGMTPTLWAAFQGNLEALRLLVGRG 75
E AA +G +E +R L+ G
Sbjct: 1 EPSADWLATAAARGRVEEVRALLEAG 26
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 118
Score = 29.1 bits (63), Expect = 0.026
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 54 TPTLWAAFQGNLEALRLLV 72
+WA G+L+ ++ V
Sbjct: 4 KEFMWALKNGDLDEVKDYV 22
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 27.3 bits (59), Expect = 0.13
Identities = 6/35 (17%), Positives = 9/35 (25%), Gaps = 3/35 (8%)
Query: 44 DCNAKD-EDGMTPT--LWAAFQGNLEALRLLVGRG 75
A D T +G + + L G
Sbjct: 92 AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 126
Score = 25.8 bits (55), Expect = 0.49
Identities = 2/23 (8%), Positives = 11/23 (47%)
Query: 53 MTPTLWAAFQGNLEALRLLVGRG 75
+ L ++ +G + ++ ++
Sbjct: 2 LALLLDSSLEGEFDLVQRIIYEV 24
>d2axtc1 f.55.1.1 (C:27-473) Photosystem II CP43 protein PsbC
{Thermosynechococcus elongatus [TaxId: 146786]}
Length = 447
Score = 22.5 bits (48), Expect = 7.0
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 5 VLLVTNRAYGPQANSSYLLLPPRAAQDGMLDI 36
V ++TN P+ YLL P + ++ +
Sbjct: 170 VRVITNPTLDPRVIFGYLLKSPFGGEGWIVSV 201
>d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU
{Escherichia coli, o157 [TaxId: 562]}
Length = 100
Score = 22.0 bits (47), Expect = 7.8
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 26 PRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLL 71
P+A++D ++ + + K A DG Q N ++ L
Sbjct: 23 PKASRDSIVGLHGDEVKVAITAPPVDG---------QANSHLVKFL 59
>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 355
Score = 22.3 bits (47), Expect = 7.9
Identities = 3/14 (21%), Positives = 5/14 (35%)
Query: 49 DEDGMTPTLWAAFQ 62
D L++ Q
Sbjct: 77 DVSAACGWLFSGIQ 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.402
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 256,112
Number of extensions: 8657
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 62
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)