BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1353
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OPM|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Substrate
pdb|3PHM|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm)
pdb|1PHM|A Chain A, Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm)
From Rat
Length = 310
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 115/270 (42%), Gaps = 35/270 (12%)
Query: 98 SSEGIVHHMELFHCIAPPQQDIPLY--EGPCSSPEKPPIVESCKSVLAAWAMGALPFRYP 155
+S VHHM LF C P + EG C+ ++L AWA A P R P
Sbjct: 57 ASMDTVHHMLLFGCNMPSSTGSYWFCDEGTCTDK---------ANILYAWARNAPPTRLP 107
Query: 156 KEAGRPIGGPASNSYVMLEVHYNNPEHIAGIIDS----SGLRLQISKSLRRYDAGIMELG 211
K G +GG + Y +L+VHY + I+ D+ SG+ + +++ + AG+
Sbjct: 108 KGVGFRVGGETGSKYFVLQVHYGD---ISAFRDNHKDCSGVSVHLTRVPQPLIAGMY--- 161
Query: 212 LEYTDKMAVPPRTNYFTLSGYCTSECTTVGLPSKGIKVFGSQLHTHLTGKRVYTRHIRNG 271
L + +PP C + + VF ++HTH GK V +RNG
Sbjct: 162 LMMSVDTVIPPGEKVVNADISCQYKMYP-------MHVFAYRVHTHHLGKVVSGYRVRNG 214
Query: 272 RELAELNRDNHYSPHFQEIRLLKHPVTVLPGDALITTCVYNTQSRANITLGGFAITDEMC 331
+ + R N P Q ++HPV V GD L CV+ + R T G +DEMC
Sbjct: 215 -QWTLIGRQNPQLP--QAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDEMC 271
Query: 332 VNYIHYYP----LVDLEVCKSSVSSDNLRT 357
YI YY + C +V+ D RT
Sbjct: 272 NLYIMYYMEAKYALSFMTCTKNVAPDMFRT 301
>pdb|1YJK|A Chain A, Reduced Peptidylglycine Alpha-Hydroxylating Monooxygenase
(Phm) In A New Crystal Form
Length = 306
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 115/270 (42%), Gaps = 35/270 (12%)
Query: 98 SSEGIVHHMELFHCIAPPQQDIPLY--EGPCSSPEKPPIVESCKSVLAAWAMGALPFRYP 155
+S VHHM LF C P + EG C+ ++L AWA A P R P
Sbjct: 52 ASMDTVHHMLLFGCNMPSSTGSYWFCDEGTCTDK---------ANILYAWARNAPPTRLP 102
Query: 156 KEAGRPIGGPASNSYVMLEVHYNNPEHIAGIIDS----SGLRLQISKSLRRYDAGIMELG 211
K G +GG + Y +L+VHY + I+ D+ SG+ + +++ + AG+
Sbjct: 103 KGVGFRVGGETGSKYFVLQVHYGD---ISAFRDNHKDCSGVSVHLTRVPQPLIAGMY--- 156
Query: 212 LEYTDKMAVPPRTNYFTLSGYCTSECTTVGLPSKGIKVFGSQLHTHLTGKRVYTRHIRNG 271
L + +PP C + + VF ++HTH GK V +RNG
Sbjct: 157 LMMSVDTVIPPGEKVVNADISCQYKMYP-------MHVFAYRVHTHHLGKVVSGYRVRNG 209
Query: 272 RELAELNRDNHYSPHFQEIRLLKHPVTVLPGDALITTCVYNTQSRANITLGGFAITDEMC 331
+ + R N P Q ++HPV V GD L CV+ + R T G +DEMC
Sbjct: 210 -QWTLIGRQNPQLP--QAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDEMC 266
Query: 332 VNYIHYYP----LVDLEVCKSSVSSDNLRT 357
YI YY + C +V+ D RT
Sbjct: 267 NLYIMYYMEAKYALSFMTCTKNVAPDMFRT 296
>pdb|1SDW|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase With Bound Peptide And Dioxygen
pdb|3MIB|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Nitrite
pdb|3MIC|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Azide Obtained By
Co-Crystallization
pdb|3MID|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Azide Obtained By Soaking
(100mm Nan3)
pdb|3MIE|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Azide Obtained By Soaking
(50mm Nan3)
pdb|3MIF|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Carbon Monooxide (Co)
pdb|3MIG|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Nitrite, Obtained In The
Presence Of Substrate
pdb|3MIH|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Azide, Obtained In The
Presence Of Substrate
pdb|3MLJ|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Carbon Monooxide (Co)
pdb|3MLK|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Nitrite
pdb|3MLL|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating
Monooxygenase (Phm) With Bound Azide
Length = 314
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 115/270 (42%), Gaps = 35/270 (12%)
Query: 98 SSEGIVHHMELFHCIAPPQQDIPLY--EGPCSSPEKPPIVESCKSVLAAWAMGALPFRYP 155
+S VHHM LF C P + EG C+ ++L AWA A P R P
Sbjct: 59 ASMDTVHHMLLFGCNMPSSTGSYWFCDEGTCTDK---------ANILYAWARNAPPTRLP 109
Query: 156 KEAGRPIGGPASNSYVMLEVHYNNPEHIAGIIDS----SGLRLQISKSLRRYDAGIMELG 211
K G +GG + Y +L+VHY + I+ D+ SG+ + +++ + AG+
Sbjct: 110 KGVGFRVGGETGSKYFVLQVHYGD---ISAFRDNHKDCSGVSVHLTRVPQPLIAGMY--- 163
Query: 212 LEYTDKMAVPPRTNYFTLSGYCTSECTTVGLPSKGIKVFGSQLHTHLTGKRVYTRHIRNG 271
L + +PP C + + VF ++HTH GK V +RNG
Sbjct: 164 LMMSVDTVIPPGEKVVNADISCQYKMYP-------MHVFAYRVHTHHLGKVVSGYRVRNG 216
Query: 272 RELAELNRDNHYSPHFQEIRLLKHPVTVLPGDALITTCVYNTQSRANITLGGFAITDEMC 331
+ + R N P Q ++HPV V GD L CV+ + R T G +DEMC
Sbjct: 217 -QWTLIGRQNPQLP--QAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDEMC 273
Query: 332 VNYIHYYP----LVDLEVCKSSVSSDNLRT 357
YI YY + C +V+ D RT
Sbjct: 274 NLYIMYYMEAKYALSFMTCTKNVAPDMFRT 303
>pdb|1YIP|A Chain A, Oxidized Peptidylglycine Alpha-hydroxylating Monooxygenase
(phm) In A New Crystal Form
Length = 311
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 115/270 (42%), Gaps = 35/270 (12%)
Query: 98 SSEGIVHHMELFHCIAPPQQDIPLY--EGPCSSPEKPPIVESCKSVLAAWAMGALPFRYP 155
+S VHHM LF C P + EG C+ ++L AWA A P R P
Sbjct: 57 ASMDTVHHMLLFGCNMPSSTGSYWFCDEGTCTDK---------ANILYAWARNAPPTRLP 107
Query: 156 KEAGRPIGGPASNSYVMLEVHYNNPEHIAGIIDS----SGLRLQISKSLRRYDAGIMELG 211
K G +GG + Y +L+VHY + I+ D+ SG+ + +++ + AG+
Sbjct: 108 KGVGFRVGGETGSKYFVLQVHYGD---ISAFRDNHKDCSGVSVHLTRVPQPLIAGMY--- 161
Query: 212 LEYTDKMAVPPRTNYFTLSGYCTSECTTVGLPSKGIKVFGSQLHTHLTGKRVYTRHIRNG 271
L + +PP C + + VF ++HTH GK V +RNG
Sbjct: 162 LMMSVDTVIPPGEKVVNADISCQYKMYP-------MHVFAYRVHTHHLGKVVSGYRVRNG 214
Query: 272 RELAELNRDNHYSPHFQEIRLLKHPVTVLPGDALITTCVYNTQSRANITLGGFAITDEMC 331
+ + R N P Q ++HPV V GD L CV+ + R T G +DEMC
Sbjct: 215 -QWTLIGRQNPQLP--QAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDEMC 271
Query: 332 VNYIHYYP----LVDLEVCKSSVSSDNLRT 357
YI YY + C +V+ D RT
Sbjct: 272 NLYIMYYMEAKYALSFMTCTKNVAPDMFRT 301
>pdb|4E4Z|A Chain A, Oxidized (cu2+) Peptidylglycine Alpha-hydroxylating
Monooxygenase (phm) In Complex With Hydrogen Peroxide
(1.98 A)
Length = 312
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 115/270 (42%), Gaps = 35/270 (12%)
Query: 98 SSEGIVHHMELFHCIAPPQQDIPLY--EGPCSSPEKPPIVESCKSVLAAWAMGALPFRYP 155
+S VHHM LF C P + EG C+ ++L AWA A P R P
Sbjct: 57 ASMDTVHHMLLFGCNMPSSTGSYWFCDEGTCTDK---------ANILYAWARNAPPTRLP 107
Query: 156 KEAGRPIGGPASNSYVMLEVHYNNPEHIAGIIDS----SGLRLQISKSLRRYDAGIMELG 211
K G +GG + Y +L+VHY + I+ D+ SG+ + +++ + AG+
Sbjct: 108 KGVGFRVGGETGSKYFVLQVHYGD---ISAFRDNHKDCSGVSVHLTRVPQPLIAGMY--- 161
Query: 212 LEYTDKMAVPPRTNYFTLSGYCTSECTTVGLPSKGIKVFGSQLHTHLTGKRVYTRHIRNG 271
L + +PP C + + VF ++HTH GK V +RNG
Sbjct: 162 LMMSVDTVIPPGEKVVNADISCQYKMYP-------MHVFAYRVHTHHLGKVVSGYRVRNG 214
Query: 272 RELAELNRDNHYSPHFQEIRLLKHPVTVLPGDALITTCVYNTQSRANITLGGFAITDEMC 331
+ + R N P Q ++HPV V GD L CV+ + R T G +DEMC
Sbjct: 215 -QWTLIGRQNPQLP--QAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDEMC 271
Query: 332 VNYIHYYP----LVDLEVCKSSVSSDNLRT 357
YI YY + C +V+ D RT
Sbjct: 272 NLYIMYYMEAKYALSFMTCTKNVAPDMFRT 301
>pdb|1YJL|A Chain A, Reduced Peptidylglycine Alpha-Hydroxylating Monooxygenase
In A New Crystal Form
Length = 306
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 115/270 (42%), Gaps = 35/270 (12%)
Query: 98 SSEGIVHHMELFHCIAPPQQDIPLY--EGPCSSPEKPPIVESCKSVLAAWAMGALPFRYP 155
+S VHHM LF C P + EG C+ ++L AWA A P R P
Sbjct: 52 ASMDTVHHMLLFGCNMPSSTGSYWFCDEGTCTDK---------ANILYAWARNAPPTRLP 102
Query: 156 KEAGRPIGGPASNSYVMLEVHYNNPEHIAGIIDS----SGLRLQISKSLRRYDAGIMELG 211
K G +GG + Y +L+VHY + I+ D+ SG+ + +++ + AG+
Sbjct: 103 KGVGFRVGGETGSKYFVLQVHYGD---ISAFRDNHKDCSGVSVHLTRVPQPLIAGMY--- 156
Query: 212 LEYTDKMAVPPRTNYFTLSGYCTSECTTVGLPSKGIKVFGSQLHTHLTGKRVYTRHIRNG 271
L + +PP C + + VF ++HTH GK V +RNG
Sbjct: 157 LMMSVDTVIPPGEKVVNADISCQYKMYP-------MHVFAYRVHTHHLGKVVSGYRVRNG 209
Query: 272 RELAELNRDNHYSPHFQEIRLLKHPVTVLPGDALITTCVYNTQSRANITLGGFAITDEMC 331
+ + R N P Q ++HPV V GD L CV+ + R T G +DE+C
Sbjct: 210 -QWTLIGRQNPQLP--QAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDEIC 266
Query: 332 VNYIHYYP----LVDLEVCKSSVSSDNLRT 357
YI YY + C +V+ D RT
Sbjct: 267 NLYIMYYMEAKYALSFMTCTKNVAPDMFRT 296
>pdb|1YI9|A Chain A, Crystal Structure Analysis Of The Oxidized Form Of The
M314i Mutant Of Peptidylglycine Alpha-Hydroxylating
Monooxygenase
Length = 309
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 112/267 (41%), Gaps = 29/267 (10%)
Query: 98 SSEGIVHHMELFHCIAPPQQDIPLY--EGPCSSPEKPPIVESCKSVLAAWAMGALPFRYP 155
+S VHHM LF C P + EG C+ ++L AWA A P R P
Sbjct: 55 ASMDTVHHMLLFGCNMPSSTGSYWFCDEGTCTDK---------ANILYAWARNAPPTRLP 105
Query: 156 KEAGRPIGGPASNSYVMLEVHYNNPEHIA-GIIDSSGLRLQISKSLRRYDAGIMELGLEY 214
K G +GG + Y +L+VHY + D SG+ + +++ + AG+ L
Sbjct: 106 KGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGMY---LMM 162
Query: 215 TDKMAVPPRTNYFTLSGYCTSECTTVGLPSKGIKVFGSQLHTHLTGKRVYTRHIRNGREL 274
+ +PP C + + VF ++HTH GK V +RNG +
Sbjct: 163 SVDTVIPPGEKVVNADISCQYKMYP-------MHVFAYRVHTHHLGKVVSGYRVRNG-QW 214
Query: 275 AELNRDNHYSPHFQEIRLLKHPVTVLPGDALITTCVYNTQSRANITLGGFAITDEMCVNY 334
+ R N P Q ++HPV V GD L CV+ + R T G +DE+C Y
Sbjct: 215 TLIGRQNPQLP--QAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDEICNLY 272
Query: 335 IHYYP----LVDLEVCKSSVSSDNLRT 357
I YY + C +V+ D RT
Sbjct: 273 IMYYMEAKYALSFMTCTKNVAPDMFRT 299
>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
pdb|1RS0|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With Di-Isopropyl-Phosphate (Dip)
pdb|1RTK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With 4-Guanidinobenzoic Acid
Length = 497
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 242 LPSKGIK-VFGSQLHTHLTGKRVYTRHIRNGRELAELNRDNHYSPHFQEIRLLKHPVT 298
LP++ IK +F S+ LT K VY I+NG + RD Y+P + +++ + VT
Sbjct: 356 LPAQDIKALFVSEEEKKLTRKEVY---IKNGDKKGSCERDAQYAPGYDKVKDISEVVT 410
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 242 LPSKGIK-VFGSQLHTHLTGKRVYTRHIRNGRELAELNRDNHYSPHFQEIRLLKHPVT 298
LP++ IK +F S+ LT K VY I+NG + RD Y+P + +++ + VT
Sbjct: 608 LPAQDIKALFVSEEEKKLTRKEVY---IKNGDKKGSCERDAQYAPGYDKVKDISEVVT 662
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 242 LPSKGIK-VFGSQLHTHLTGKRVYTRHIRNGRELAELNRDNHYSPHFQEIRLLKHPVT 298
LP++ IK +F S+ LT K VY I+NG + RD Y+P + +++ + VT
Sbjct: 589 LPAQDIKALFVSEEEKKLTRKEVY---IKNGDKKGSCERDAQYAPGYDKVKDISEVVT 643
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 242 LPSKGIK-VFGSQLHTHLTGKRVYTRHIRNGRELAELNRDNHYSPHFQEIRLLKHPVT 298
LP++ IK +F S+ LT K VY I+NG + RD Y+P + +++ + VT
Sbjct: 598 LPAQDIKALFVSEEEKKLTRKEVY---IKNGDKKGSCERDAQYAPGYDKVKDISEVVT 652
>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|J Chain J, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|K Chain K, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|L Chain L, C3 Convertase (C3bbb) Stabilized By Scin
Length = 507
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 242 LPSKGIK-VFGSQLHTHLTGKRVYTRHIRNGRELAELNRDNHYSPHFQEIRLLKHPVT 298
LP++ IK +F S+ LT K VY I+NG + RD Y+P + +++ + VT
Sbjct: 364 LPAQDIKALFVSEEEKKLTRKEVY---IKNGDKKGSCERDAQYAPGYDKVKDISEVVT 418
>pdb|1DLE|A Chain A, Factor B Serine Protease Domain
pdb|1DLE|B Chain B, Factor B Serine Protease Domain
Length = 298
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 242 LPSKGIK-VFGSQLHTHLTGKRVYTRHIRNGRELAELNRDNHYSPHFQEIRLLKHPVT 298
LP++ IK +F S+ LT K VY I+NG + RD Y+P + +++ + VT
Sbjct: 157 LPAQDIKALFVSEEEKKLTRKEVY---IKNGDKKGSCERDAQYAPGYDKVKDISEVVT 211
>pdb|4DYK|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
pdb|4DYK|B Chain B, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
Length = 451
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 11/129 (8%)
Query: 177 YNNPEHIAGIIDSSGLRLQISKSL-------RRYDAGIMELGLEYTDKMAVPPRTN--YF 227
Y P+ I G++ SG+R Q++ + R A + G+ D + PR +
Sbjct: 133 YFYPQAICGVVHDSGVRAQVAIPVLDFPIPGARDSAEAIRQGMALFDDLKHHPRIRIAFG 192
Query: 228 TLSGYCTSECTTVGLPSKGIKVFGS-QLHTHLTGKRVYTRHIRNG-RELAELNRDNHYSP 285
+ Y S+ + ++ S Q+H H T V RNG R LA L+R P
Sbjct: 193 PHAPYTVSDDKLEQILVLTEELDASIQMHVHETAFEVEQAMERNGERPLARLHRLGLLGP 252
Query: 286 HFQEIRLLK 294
FQ + + +
Sbjct: 253 RFQAVHMTQ 261
>pdb|4DVQ|A Chain A, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|B Chain B, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|C Chain C, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|D Chain D, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|E Chain E, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|F Chain F, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|G Chain G, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|H Chain H, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|I Chain I, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|J Chain J, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|K Chain K, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|L Chain L, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4FDH|A Chain A, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|B Chain B, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|C Chain C, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|D Chain D, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|E Chain E, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|F Chain F, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|G Chain G, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|H Chain H, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|I Chain I, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|J Chain J, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|K Chain K, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|L Chain L, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
Length = 483
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 174 EVHYNNPEHIAGIIDSSGLRLQISKSLRRYDAGIMELGLEYTDKMAVPPRTNYFTLS 230
E+ +N P+H GI+ + L L+ SL A MEL D A P F L+
Sbjct: 251 ELAFNRPQHYTGIV--AELLLKAELSLEAIKANSMELTAGSVDTTAFPLLMTLFELA 305
>pdb|3IG0|A Chain A, Crystal Structure Of The Second Part Of The Mycobacterium
Tuberculosis Dna Gyrase Reaction Core: The Toprim Domain
At 2.1 A Resolution
pdb|3M4I|A Chain A, Crystal Structure Of The Second Part Of The Mycobacterium
Tuberculosis Dna Gyrase Reaction Core: The Toprim Domain
At 1.95 A Resolution
Length = 242
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 304 ALITTCVYNTQSRANITLGGFAITDEMCVNYIHYYPLV---DLEVCKSSVSSDNLRTFFN 360
A I + NT+ +A IT G I DE + + Y+ +V D +V +S+ L F
Sbjct: 58 ARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADADVDGQHISTLLLTLLFR 117
Query: 361 YMH 363
+M
Sbjct: 118 FMR 120
>pdb|2ZJT|A Chain A, Crystal Structure Of Dna Gyrase B' Domain Sheds Lights On
The Mechanism For T-Segment Navigation
pdb|2ZJT|B Chain B, Crystal Structure Of Dna Gyrase B' Domain Sheds Lights On
The Mechanism For T-Segment Navigation
Length = 247
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 304 ALITTCVYNTQSRANITLGGFAITDEMCVNYIHYYPLV---DLEVCKSSVSSDNLRTFFN 360
A I + NT+ +A IT G I DE + + Y+ +V D +V +S+ L F
Sbjct: 50 ARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADADVDGQHISTLLLTLLFR 109
Query: 361 YMH 363
+M
Sbjct: 110 FMR 112
>pdb|3UJZ|A Chain A, Crystal Structure Of Enterohemorrhagic E. Coli Stce
Length = 869
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 239 TVGLPSKGIKVFGSQLHTHLTGKRVYTRHIRNGRELAELNRDNHYSPHFQEIRLLK---H 295
TV +K GS +H+HLT + H NGR + ++ + +R + +
Sbjct: 126 TVAEVNKLSDASGSSIHSHLTNNALVEIHTANGRWVRDIYLPQGPDLEGKXVRFVSSAGY 185
Query: 296 PVTVLPGDALITTCVYNT 313
TV GD +T V NT
Sbjct: 186 SSTVFYGDRKVTLSVGNT 203
>pdb|1P9B|A Chain A, Structure Of Fully Ligated Adenylosuccinate Synthetase
From Plasmodium Falciparum
Length = 442
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 232 YCTSECTTVGLPSKGIKVFGSQLHTHLTGKRVYTRHIRNGRELAELNRD 280
Y TS CTTVG G+ + +L+ + + Y + G L ELN D
Sbjct: 245 YVTSSCTTVGGVFSGLGIHHKKLNLVVGVVKSYLTRVGCGPFLTELNND 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,828,575
Number of Sequences: 62578
Number of extensions: 537096
Number of successful extensions: 1145
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1116
Number of HSP's gapped (non-prelim): 22
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)