Query psy1353
Match_columns 431
No_of_seqs 215 out of 402
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 21:40:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yi9_A PAM, peptidyl-glycine a 100.0 1.3E-71 4.6E-76 555.0 25.5 248 83-354 43-296 (309)
2 1d7b_A Cellobiose dehydrogenas 97.9 0.00011 3.6E-09 68.0 13.1 89 20-113 12-123 (186)
3 1gr3_A Collagen X; extracellul 70.0 18 0.00062 31.9 8.5 65 243-311 72-136 (160)
4 1o91_A Collagen alpha 1(VIII) 68.4 28 0.00096 31.2 9.6 65 243-311 90-154 (178)
5 2wnv_C C1Q chain C, complement 68.4 41 0.0014 28.2 10.2 64 243-312 47-110 (131)
6 2wnv_B C1Q chain B, complement 67.9 14 0.00047 31.5 7.1 64 243-311 46-111 (136)
7 2wnv_A C1Q chain A, complement 61.9 20 0.00069 30.3 7.0 66 243-312 43-111 (134)
8 2z35_A T-cell receptor alpha-c 54.5 8.5 0.00029 30.5 3.1 33 289-321 2-34 (112)
9 2frg_P TREM-like transcript-1; 52.1 6.3 0.00022 31.7 2.0 40 295-335 5-44 (106)
10 3bik_B Programmed cell death p 49.7 17 0.0006 30.1 4.5 36 287-322 9-44 (134)
11 1fo0_B Protein (BM3.3 T cell r 48.8 17 0.0006 28.8 4.2 31 291-321 5-35 (112)
12 4dou_A Adiponectin; single-cha 47.5 80 0.0028 32.2 9.8 64 243-310 208-271 (442)
13 1qfw_M FV, antibody (anti beta 47.2 23 0.00078 27.7 4.6 31 291-321 5-35 (108)
14 2nms_A CMRF35-like-molecule 1; 45.2 20 0.00068 29.3 4.1 29 294-322 9-37 (124)
15 1jhl_L IGG1-kappa D11.15 FV (l 44.8 26 0.00087 27.2 4.5 29 293-321 7-35 (108)
16 1tvd_A T cell receptor, ES204 44.5 16 0.00056 28.9 3.3 33 289-321 2-35 (116)
17 1nez_G T-cell surface glycopro 44.2 30 0.001 28.5 5.1 34 288-321 5-38 (128)
18 2q20_A VK1 O18/O8 germline lig 44.2 27 0.00092 27.3 4.6 29 293-321 9-37 (109)
19 2cal_A Rusticyanin; iron respi 43.6 43 0.0015 29.0 6.2 45 266-310 29-76 (154)
20 1fo0_A Protein (BM3.3 T cell r 42.7 14 0.00049 29.4 2.7 25 290-314 3-27 (116)
21 4f3j_A Complement C1Q tumor ne 42.5 99 0.0034 26.2 8.3 65 243-310 45-109 (148)
22 1sq2_N Novel antigen receptor; 41.1 31 0.001 27.4 4.5 24 292-315 5-28 (113)
23 2e27_L Anti-ciguatoxin antibod 40.5 28 0.00095 28.0 4.2 29 293-321 9-37 (119)
24 2otu_A FV light chain variable 40.2 29 0.00099 27.4 4.2 28 294-321 8-36 (115)
25 1i3g_L Antibody FV fragment; a 39.9 34 0.0012 26.8 4.5 32 290-321 7-38 (111)
26 1h5b_A Murine T cell receptor 38.6 29 0.001 27.2 4.0 33 288-321 2-34 (113)
27 1zox_A CLM-1; IG-superfamily, 38.1 25 0.00084 27.5 3.4 39 294-332 8-46 (113)
28 4dou_A Adiponectin; single-cha 37.9 1.1E+02 0.0037 31.3 9.0 66 243-312 67-132 (442)
29 2hp4_A T-cell surface glycopro 36.7 30 0.001 27.5 3.8 25 291-315 4-28 (114)
30 2yc1_B Single chain antibody f 36.0 38 0.0013 28.8 4.5 32 290-321 19-50 (146)
31 3bp6_A Programmed cell death p 35.6 46 0.0016 26.4 4.8 22 294-315 6-27 (117)
32 1i8k_A Epidermal growth factor 35.1 40 0.0014 26.1 4.2 28 294-321 8-35 (107)
33 4hc4_A Protein arginine N-meth 35.0 26 0.0009 35.1 3.8 30 286-315 318-348 (376)
34 3r8b_B G5-8, enterotoxin type 34.8 42 0.0014 27.2 4.5 32 290-321 8-39 (125)
35 1hkf_A NKP44, NK cell activati 33.7 25 0.00084 28.7 2.8 43 293-335 16-59 (122)
36 2q87_A CMRF35-H antigen; all-b 33.7 22 0.00076 27.7 2.5 22 295-316 4-25 (110)
37 2ol3_A BM3.3 T-cell receptor a 33.3 16 0.00054 30.8 1.6 22 294-315 7-28 (142)
38 2atp_B T-cell surface glycopro 32.2 38 0.0013 26.6 3.7 21 294-314 5-25 (115)
39 1mqk_L Antibody 7E2 FV fragmen 31.9 51 0.0017 26.4 4.5 28 294-321 8-35 (120)
40 1dlf_L Anti-dansyl immunoglobu 30.7 55 0.0019 25.5 4.4 22 294-315 8-29 (113)
41 3m45_A Cell adhesion molecule 30.0 39 0.0013 25.4 3.3 29 293-321 12-40 (108)
42 2ywz_A NEW antigen receptor va 29.9 67 0.0023 25.1 4.8 22 294-315 7-28 (111)
43 1lp9_E T-cell receptor alpha c 29.2 44 0.0015 29.4 3.9 34 288-321 2-35 (194)
44 1dqt_A CTLA4, cytotoxic T lymp 29.2 47 0.0016 26.2 3.7 22 294-315 6-27 (117)
45 3nfj_J T cell receptor beta ch 29.0 52 0.0018 28.9 4.4 34 288-321 2-35 (245)
46 3tpk_A Immunoglobulin heavy ch 28.3 50 0.0017 27.5 3.9 20 295-314 12-31 (136)
47 3bj9_1 Immunoglobulin IOTA cha 28.2 36 0.0012 26.7 2.8 20 295-314 6-25 (116)
48 2nw2_A ELS4 TCR alpha chain; T 27.6 33 0.0011 30.5 2.8 32 289-321 2-33 (200)
49 2oi9_C V beta, T cell receptor 27.1 61 0.0021 26.0 4.1 29 292-321 6-34 (121)
50 1j05_L T84.66 antibody, anti-C 26.7 49 0.0017 25.7 3.4 22 294-315 8-29 (111)
51 3u6r_L Antibody 1:7 (light cha 26.0 71 0.0024 26.9 4.5 28 294-321 7-34 (143)
52 2yz1_A Tyrosine-protein phosph 25.8 47 0.0016 26.1 3.2 28 294-321 14-42 (120)
53 4ffy_L DENV1-E111 single chain 25.7 47 0.0016 26.7 3.2 22 294-315 8-29 (126)
54 2coq_A NEW antigen receptor va 25.7 55 0.0019 25.4 3.5 22 294-315 7-28 (108)
55 3bia_X T-cell immunoglobulin a 25.5 28 0.00097 27.4 1.7 19 295-313 4-22 (116)
56 3dmm_C T-cell surface glycopro 25.4 65 0.0022 28.2 4.3 31 290-320 12-42 (166)
57 3moq_A NEW antigen receptor va 25.3 75 0.0026 26.1 4.4 22 293-314 6-27 (126)
58 1pew_A JTO2, A lambda-6 type i 25.2 46 0.0016 25.8 3.0 28 294-321 7-36 (109)
59 1q8m_A Triggering receptor exp 25.1 27 0.00091 29.3 1.6 19 296-314 13-31 (127)
60 1oaq_L Light chain; antibody, 24.4 64 0.0022 25.5 3.7 21 295-315 8-28 (120)
61 1p4b_L Antibody variable light 24.1 69 0.0024 26.5 4.0 21 295-315 13-33 (135)
62 2bnu_A TCR alpha chain, T-cell 24.1 50 0.0017 29.1 3.3 34 288-321 1-34 (203)
63 1n4x_H Immunoglobulin heavy ch 23.3 97 0.0033 24.4 4.6 21 294-314 7-27 (120)
64 1j05_H T84.66 antibody, anti-C 23.2 95 0.0033 24.5 4.6 21 294-314 7-27 (121)
65 3rrq_A Protein PD-1, programme 23.2 62 0.0021 26.3 3.5 22 294-315 8-29 (129)
66 3jxo_A TRKA-N domain protein; 23.2 75 0.0026 23.9 3.8 17 296-312 58-74 (86)
67 1smo_A Triggering receptor exp 23.0 22 0.00075 29.0 0.6 19 295-313 7-25 (119)
68 1nko_A Sialic acid binding IG- 22.8 70 0.0024 25.6 3.7 22 293-314 12-33 (132)
69 2fyt_A Protein arginine N-meth 22.4 59 0.002 31.4 3.7 33 285-317 287-320 (340)
70 3knb_A Titin; IG-like, titin, 22.4 70 0.0024 24.6 3.5 28 294-321 12-39 (100)
71 3cx2_A Myosin-binding protein 22.4 76 0.0026 24.4 3.7 28 294-321 11-41 (108)
72 1oga_D T-cell receptor alpha c 22.2 61 0.0021 29.1 3.5 33 288-321 2-34 (215)
73 2bk8_A Connectin, M1, titin he 22.2 1.2E+02 0.004 22.5 4.7 29 293-321 7-36 (97)
74 1mfa_H IGG1-lambda Se155-4 FAB 22.2 81 0.0028 24.9 4.0 21 294-314 7-27 (120)
75 3t0v_A Immunoglobulin variable 22.1 73 0.0025 25.9 3.7 22 294-315 7-28 (123)
76 1hxm_B Gamma-delta T-cell rece 22.0 83 0.0028 27.8 4.4 33 289-321 3-37 (242)
77 1xiw_D Immunoglobulin heavy ch 21.9 1E+02 0.0035 24.4 4.5 21 294-314 7-27 (122)
78 2yc1_A Single chain antibody f 21.8 90 0.0031 24.4 4.1 21 294-314 7-27 (117)
79 2p45_B Antibody CAB-RN05; seMe 21.7 86 0.0029 24.8 4.0 20 295-314 10-29 (123)
80 4gjt_B Poliovirus receptor-rel 21.7 59 0.002 25.9 3.0 24 294-317 7-30 (123)
81 1xed_A Polymeric-immunoglobuli 21.5 30 0.001 27.9 1.1 20 295-314 8-27 (117)
82 2h32_A Immunoglobulin IOTA cha 21.5 63 0.0022 26.1 3.2 21 294-314 7-27 (126)
83 2i24_N NEW antigen receptor PB 21.5 83 0.0028 25.4 3.9 22 294-315 7-28 (121)
84 3b9v_A Heavy chain variable do 21.4 90 0.0031 24.5 4.1 21 294-314 7-27 (120)
85 1eeq_A Kappa-4 immunoglobulin 21.3 76 0.0026 24.7 3.6 22 294-315 8-29 (114)
86 3rgv_A YAE62 TCR A chain; TCR, 21.3 58 0.002 29.4 3.1 29 289-317 2-30 (200)
87 2eys_A NKT15; natural killer T 21.2 80 0.0028 28.1 4.1 32 290-321 6-37 (210)
88 1a2y_B IGG1-kappa D1.3 FV (hea 20.9 1E+02 0.0034 24.2 4.2 20 295-314 8-27 (116)
89 1lk3_L 9D7 light chain; antige 20.7 91 0.0031 26.4 4.2 28 294-321 7-34 (210)
90 3qjh_A 5C.C7 alpha chain; immu 20.7 59 0.002 29.4 3.1 27 288-314 4-30 (205)
91 3khq_A B-cell antigen receptor 20.5 98 0.0033 25.3 4.2 27 288-314 18-44 (133)
92 2oyp_A Hepatitis A virus cellu 20.5 67 0.0023 24.2 3.0 44 295-338 2-48 (109)
93 4ei6_A Valpha1 XV19 type II na 20.2 54 0.0018 29.8 2.7 28 288-315 3-30 (208)
94 1z9m_A GAPA225; nectin-like, I 20.2 54 0.0018 26.8 2.5 30 293-322 44-73 (145)
95 1xau_A B- and T-lymphocyte att 20.1 86 0.003 26.6 3.7 25 297-321 24-49 (122)
No 1
>1yi9_A PAM, peptidyl-glycine alpha-amidating monooxygenase; bioactive peptide activation, ascorbate, oxidoreductase; 1.70A {Rattus norvegicus} SCOP: b.121.1.2 b.121.1.2 PDB: 1sdw_A* 3mib_A 3mic_A 3mid_A 3mie_A 3mif_A 3mig_A 3mih_A 3mlj_A 3mlk_A 3mll_A 1yip_A 1phm_A 1opm_A 3phm_A 1yjl_A 1yjk_A
Probab=100.00 E-value=1.3e-71 Score=555.00 Aligned_cols=248 Identities=29% Similarity=0.470 Sum_probs=203.6
Q ss_pred CCCceeeEEeeeecCCCCCceEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCcccccccceEEeeCCCCCccCCCCCeeec
Q psy1353 83 ENRHNSIQFESAIQPSSEGIVHHMELFHCIAPPQQDIPLYEGPCSSPEKPPIVESCKSVLAAWAMGALPFRYPKEAGRPI 162 (431)
Q Consensus 83 ~~k~HIi~~EP~i~pGN~~vVHHmlly~C~~~~~~~~~~~~~~C~~~~~p~~~~~c~~vl~aWA~Ga~~~~~P~~vG~~I 162 (431)
++||||++|||+ ||+++||||+||.|..+. +. ...++|+.+ .+..|+++|+|||+|++++.||+|||++|
T Consensus 43 ~~~~hIv~~Ep~---gn~~~VHHmlly~c~~~~-~~--~~~~~C~~~----~c~~~~~il~aWa~Ga~~~~~P~~vG~~i 112 (309)
T 1yi9_A 43 DEEAFVIDFKPR---ASMDTVHHMLLFGCNMPS-ST--GSYWFCDEG----TCTDKANILYAWARNAPPTRLPKGVGFRV 112 (309)
T ss_dssp SSCEEEEEEEEE---CCTTTEEEEEEEEESSBS-CC--SSSEEGGGC----SBSSCCEEEEEEETTSCCCCCCTTEEEEE
T ss_pred CCCEEEEEEEEe---CCCCcEEEEEEEEcCCCC-CC--CCCccCCCC----ccCCCCceEEEECCCCCCccCCCCcceEC
Confidence 478999999997 799999999999999764 22 234467531 22335689999999999999999999999
Q ss_pred CCCCCCceEEEEEeecCC-CCCCCccccceeEEEEeCCCcceeeEEEEeecccCCccccCCCCcceeEEeeeeccccccc
Q psy1353 163 GGPASNSYVMLEVHYNNP-EHIAGIIDSSGLRLQISKSLRRYDAGIMELGLEYTDKMAVPPRTNYFTLSGYCTSECTTVG 241 (431)
Q Consensus 163 G~~~~~~ylvLEvHY~np-~~~~g~~DsSGirL~yT~~lr~~daGil~lG~~~~~~~~IPPg~~~f~~~g~C~~~Ct~~~ 241 (431)
|++++++|+||||||+|+ ..+++..|+|||||+||+++|++|||||+++. ..+.||||+++|.+++.|+..
T Consensus 113 g~~~~~~ylvlqvHY~n~~~~~~~~~D~SGirL~~T~~~r~~~aGvl~l~~---~~~~IPPg~~~~~~~~~Ct~~----- 184 (309)
T 1yi9_A 113 GGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGMYLMMS---VDTVIPPGEKVVNADISCQYK----- 184 (309)
T ss_dssp STTTSBCEEEEEEEECCCCTTCCCCCBCCEEEEEEESSCCSEEEEEEEEEE---CCCCCCSSCSEEEEEEEEECC-----
T ss_pred CCCCCCCEEEEEEeECCCccCCCCCccCCeEEEEECCCCCceeeEEEEecc---CCceeCcCCcceEEeeEEecc-----
Confidence 998899999999999997 44578999999999999999999999998874 468999999999999988642
Q ss_pred cCCCCeEEEEEeeecccccceEEEEEEeCCeEEEeeeecCCCCCCc-ceEEecCCceEeCCCCEEEEEEEEecCCCCcee
Q psy1353 242 LPSKGIKVFGSQLHTHLTGKRVYTRHIRNGRELAELNRDNHYSPHF-QEIRLLKHPVTVLPGDALITTCVYNTQSRANIT 320 (431)
Q Consensus 242 lp~~~I~ifa~~lH~HllGr~v~~~~iR~G~e~~~l~~d~~yDfn~-Q~~~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt 320 (431)
..+|+|||+++|||++||+++++++|||+|+. | ++|||+| |++|+|+++++|+|||+|+++|+|||++|+++|
T Consensus 185 --~~~i~ifa~~~H~Hl~G~~v~~~~vr~G~e~~-I---~~~d~~~~Q~~y~l~~~v~i~~GD~L~~~C~yd~s~r~~~t 258 (309)
T 1yi9_A 185 --MYPMHVFAYRVHTHHLGKVVSGYRVRNGQWTL-I---GRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEAT 258 (309)
T ss_dssp --SSCEEEEEEEEEESSCEEEEEEEEEETTEEEE-E---EEECTTSCCSCEEEEEEEEECTTCEEEEEEEEECC------
T ss_pred --CCceEEEEEEceeccCceEEEEEEEECCEEEE-c---ccCCCCCceeEEEcCCceEECCCCEEEEEEEecCCCCCcce
Confidence 25799999999999999999999999998753 3 4567889 999999999999999999999999999999999
Q ss_pred EeCCCCchhhccceeEeeecCC----ccccccCCCchh
Q psy1353 321 LGGFAITDEMCVNYIHYYPLVD----LEVCKSSVSSDN 354 (431)
Q Consensus 321 ~gG~~t~DEMC~~fl~YYP~~~----l~~C~S~~~~~~ 354 (431)
+||++|+||||++|++|||+++ ++.|.|.++...
T Consensus 259 ~~G~~t~dEMC~~yi~Yyp~~~~~~~~~~C~~~~~~~~ 296 (309)
T 1yi9_A 259 HIGGTSSDEICNLYIMYYMEAKYALSFMTCTKNVAPDM 296 (309)
T ss_dssp --------CCEEEEEEEEEEGGGCCSEEEECCBSCGGG
T ss_pred eCCCCccchhhheeEEEEcCcccccchhhhcCCCChHH
Confidence 9999999999999999999975 478999988654
No 2
>1d7b_A Cellobiose dehydrogenase; B-type cytochrome, Met/His ligation, beta sandwich, Fe(II)- protoporphyrin IX, oxidoreductase; HET: NAG BMA HEM 1PG; 1.90A {Phanerochaete chrysosporium} SCOP: b.1.9.1 PDB: 1d7d_A* 1d7c_A* 1pl3_A*
Probab=97.94 E-value=0.00011 Score=68.01 Aligned_cols=89 Identities=16% Similarity=0.113 Sum_probs=59.4
Q ss_pred CceEEEecCCCc-eEEEEeccCCCC------eEEEEEEeccCccCCCeEEEeecCCCCcCCCcEEEEeccCCCcee----
Q psy1353 20 GDVFDIPLNSHG-YKLFWSPNYDSG------WIKFEVHLTPALNKGDWFAIGFSNYGEFSFADYCLVLCDENRHNS---- 88 (431)
Q Consensus 20 ~~~~~~~LD~~~-~~L~W~~~~~~~------~I~F~~~v~t~~~~~gwvg~GfS~~G~m~~aDivigwvd~~k~HI---- 88 (431)
|..|...-++.. +.+.|.+..+.. .|.|+|++..+ . ||+|||+. |.|+||+|+|+|.++.+-.+
T Consensus 12 gi~f~~~~~~~~~~~f~~alP~~~~s~~~s~d~~~qi~~p~~-~--gW~g~g~G--g~M~gs~l~v~w~~~~~v~~S~R~ 86 (186)
T 1d7b_A 12 GFQFTGITDPVHDVTYGFVFPPLATSGAQSTEFIGEVVAPIA-S--KWIGIALG--GAMNNDLLLVAWANGNQIVSSTRW 86 (186)
T ss_dssp CCEEEEEEETTTTEEEEEEBCCCCSSSCCCCCEEEEEEEETT-C--CEEEEETT--SSSSSSCEEEEEEETTEEEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEECCCcccCCCCCccEEEEEEccCC-C--CEEEEecC--CCCCCCcEEEEEeCCCEEEEEEEE
Confidence 455555544344 999999864433 59999999864 3 99999997 89999999999998621111
Q ss_pred -eE-Eeee---------ecCCC-CCceEEEEEEEeCC
Q psy1353 89 -IQ-FESA---------IQPSS-EGIVHHMELFHCIA 113 (431)
Q Consensus 89 -i~-~EP~---------i~pGN-~~vVHHmlly~C~~ 113 (431)
.+ .+|. .-+|. ..--|-.+.|.|..
T Consensus 87 a~g~~~P~~y~~~~~~~lL~gs~vn~t~~~~~f~C~~ 123 (186)
T 1d7b_A 87 ATGYVQPTAYTGTATLTTLPETTINSTHWKWVFRCQG 123 (186)
T ss_dssp CSSSSCCEECCSSCEEEECTTCEECSSEEEEEEEEET
T ss_pred ecCccCCCccCCCceEEEcccccEeCCEEEEEEEeCC
Confidence 00 1222 11343 44467778899984
No 3
>1gr3_A Collagen X; extracellular matrix, connective tissue; HET: CPS; 2.0A {Homo sapiens} SCOP: b.22.1.1
Probab=69.98 E-value=18 Score=31.87 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=42.8
Q ss_pred CCCCeEEEEEeeecccccceEEEEEEeCCeEEEeeeecCCCCCCcceEEecCCceEeCCCCEEEEEEEE
Q psy1353 243 PSKGIKVFGSQLHTHLTGKRVYTRHIRNGRELAELNRDNHYSPHFQEIRLLKHPVTVLPGDALITTCVY 311 (431)
Q Consensus 243 p~~~I~ifa~~lH~HllGr~v~~~~iR~G~e~~~l~~d~~yDfn~Q~~~~l~~~v~v~pGD~L~~~C~Y 311 (431)
|..++..|++..|.. ++.+.+.+.+||+.+.... +..-+-.+|.. ...--+.+.+||++-++...
T Consensus 72 Pv~GvY~Fsft~~~~--~~~~~v~L~~Ng~~i~~~~-~~~~~~~~~~~-S~s~vL~L~~GD~Vwv~~~~ 136 (160)
T 1gr3_A 72 QIPGIYYFSYHVHVK--GTHVWVGLYKNGTPVMYTY-DEYTKGYLDQA-SGSAIIDLTENDQVWLQLPN 136 (160)
T ss_dssp SSCEEEEEEEEEEEE--EEEEEEEEEETTEEEEEEE-ECCBTTBCEEE-EEEEEEEECTTCEEEEECCC
T ss_pred ccCCEEEEEEEEEeC--CCeEEEEEEECCEEEEEEe-eccCCCcccEE-eEEEEEEECCCCEEEEEEec
Confidence 457899999877654 7788899999998753332 22112122321 22335789999999999854
No 4
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1
Probab=68.43 E-value=28 Score=31.18 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=42.2
Q ss_pred CCCCeEEEEEeeecccccceEEEEEEeCCeEEEeeeecCCCCCCcceEEecCCceEeCCCCEEEEEEEE
Q psy1353 243 PSKGIKVFGSQLHTHLTGKRVYTRHIRNGRELAELNRDNHYSPHFQEIRLLKHPVTVLPGDALITTCVY 311 (431)
Q Consensus 243 p~~~I~ifa~~lH~HllGr~v~~~~iR~G~e~~~l~~d~~yDfn~Q~~~~l~~~v~v~pGD~L~~~C~Y 311 (431)
|..++..|++..++ .++.+.+.+.+||+.+.... +..-+-.+|.. ...--+.+.+||++-++...
T Consensus 90 Pv~GvY~Fsft~~~--~~~~~~v~L~~Ng~~i~~~~-~~~~~~~~~~~-S~s~vL~L~~GD~Vwl~l~~ 154 (178)
T 1o91_A 90 EVPGVYYFAYHVHC--KGGNVWVALFKNNEPMMYTY-DEYKKGFLDQA-SGSAVLLLRPGDQVFLQMPS 154 (178)
T ss_dssp CSCEEEEEEEEEEE--EEEEEEEEEEETTEEEEEEE-ECCBTTBCEEE-EEEEEEEECTTCEEEEECCC
T ss_pred ccCeEEEEEEEEEe--ccceEEEEEEECCEEEEEEE-cccCCCcceEE-eEEEEEEECCCCEEEEEEec
Confidence 45789999987665 46788899999998653322 22111112221 12235789999999999854
No 5
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=68.39 E-value=41 Score=28.23 Aligned_cols=64 Identities=13% Similarity=0.021 Sum_probs=42.5
Q ss_pred CCCCeEEEEEeeecccccceEEEEEEeCCeEEEeeeecCCCCCCcceEEecCCceEeCCCCEEEEEEEEe
Q psy1353 243 PSKGIKVFGSQLHTHLTGKRVYTRHIRNGRELAELNRDNHYSPHFQEIRLLKHPVTVLPGDALITTCVYN 312 (431)
Q Consensus 243 p~~~I~ifa~~lH~HllGr~v~~~~iR~G~e~~~l~~d~~yDfn~Q~~~~l~~~v~v~pGD~L~~~C~Yd 312 (431)
|..|+..|++..+.+. .+.+.+.+||+....... .-.-.+|.. ...--+.+.+||++-++....
T Consensus 47 p~~G~Y~Fs~~~~~~~---~~~v~L~~Ng~~~~~~~~--~~~~~~~~~-S~~~~L~L~~GD~V~v~~~~~ 110 (131)
T 2wnv_C 47 KVPGLYYFVYHASHTA---NLCVLLYRSGVKVVTFCG--HTSKTNQVN-SGGVLLRLQVGEEVWLAVNDY 110 (131)
T ss_dssp SSCEEEEEEEEEEESS---CEEEEEEETTEEEEEEEE--CCSSSCEEE-EEEEEEEECTTCEEEEEEEEE
T ss_pred ccCCEEEEEEEEEECC---eEEEEEEECCeEEEEEEe--cCCCcccEE-eeeEEEEECCCCEEEEEEeCC
Confidence 4579999999887763 788999999955432222 112233321 233357899999999999643
No 6
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=67.89 E-value=14 Score=31.54 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=41.6
Q ss_pred CCCCeEEEEEeeecccccceEEEEEEeCCe--EEEeeeecCCCCCCcceEEecCCceEeCCCCEEEEEEEE
Q psy1353 243 PSKGIKVFGSQLHTHLTGKRVYTRHIRNGR--ELAELNRDNHYSPHFQEIRLLKHPVTVLPGDALITTCVY 311 (431)
Q Consensus 243 p~~~I~ifa~~lH~HllGr~v~~~~iR~G~--e~~~l~~d~~yDfn~Q~~~~l~~~v~v~pGD~L~~~C~Y 311 (431)
|..|+..|++..+.+. .+.+.+.+||+ +.- ....+.-+-.+|.. ...--+.+++||++-++..-
T Consensus 46 p~~G~Y~Fs~~~~~~~---~~~v~L~~Ng~~v~~~-~~~~~~~~~~~~~~-S~~~~L~L~~GD~V~v~~~~ 111 (136)
T 2wnv_B 46 KVPGLYYFTYHASSRG---NLCVNLMRGRERAQKV-VTFCDYAYNTFQVT-TGGMVLKLEQGENVFLQATD 111 (136)
T ss_dssp SSCEEEEEEEEEEESS---CEEEEEEEESSSCEEE-EEEEECCSSSCEEE-EEEEEEEECTTCEEEEEEEE
T ss_pred CcCeEEEEEEEEEECC---eEEEEEEECCcceEEE-EEEEecCCCcccEE-eeeEEEEECCCCEEEEEEeC
Confidence 4579999998887763 78899999997 322 22221112223322 22335789999999999964
No 7
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=61.86 E-value=20 Score=30.28 Aligned_cols=66 Identities=15% Similarity=0.074 Sum_probs=41.1
Q ss_pred CCCCeEEEEEeeecccccceEEEEEEeCCeE--EEee-eecCCCCCCcceEEecCCceEeCCCCEEEEEEEEe
Q psy1353 243 PSKGIKVFGSQLHTHLTGKRVYTRHIRNGRE--LAEL-NRDNHYSPHFQEIRLLKHPVTVLPGDALITTCVYN 312 (431)
Q Consensus 243 p~~~I~ifa~~lH~HllGr~v~~~~iR~G~e--~~~l-~~d~~yDfn~Q~~~~l~~~v~v~pGD~L~~~C~Yd 312 (431)
|..|+..|++..+.+ + .+.+.+.+||.+ ...+ ..+++-.-.+|.. ...--+.+++||++-++....
T Consensus 43 p~~G~Y~Fs~~~~~~--~-~~~v~L~~Ng~~~~~~~~~~~~~~~~~~~~~~-S~~~~L~L~~GD~V~l~~~~~ 111 (134)
T 2wnv_A 43 TVPGYYYFTFQVLSQ--W-EICLSIVSSSRGQVRRSLGFCDTTNKGLFQVV-SGGMVLQLQQGDQVWVEKDPK 111 (134)
T ss_dssp CSCEEEEEEEEEEES--S-CEEEEEEEEETTEEECCCEEEECCCSSSCEEE-EEEEEEEECTTCEEEEEEEEE
T ss_pred eeCCEEEEEEEEEEC--C-EEEEEEEECCCcceEEEEEEEcccCCCCcceE-eeeEEEEECCCCEEEEEEeCC
Confidence 457999999988775 3 688888898852 1112 1121112233422 233457899999999999653
No 8
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Probab=54.49 E-value=8.5 Score=30.48 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=24.6
Q ss_pred eEEecCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 289 EIRLLKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 289 ~~~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
.+..-+..+.+.+|+.+.+.|.|.......+.|
T Consensus 2 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W 34 (112)
T 2z35_A 2 SVTQTGGQVALSEEDFLTIHCNYSASGYPALFW 34 (112)
T ss_dssp EEECSCSEEEEETTCCEEECCEEECSSCCEEEE
T ss_pred ceEeCCCcEEEcCCCCEEEEEEECCCCCCeEEE
Confidence 334445678999999999999998875444544
No 9
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}
Probab=52.12 E-value=6.3 Score=31.65 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=25.4
Q ss_pred CceEeCCCCEEEEEEEEecCCCCceeEeCCCCchhhcccee
Q psy1353 295 HPVTVLPGDALITTCVYNTQSRANITLGGFAITDEMCVNYI 335 (431)
Q Consensus 295 ~~v~v~pGD~L~~~C~Ydts~r~~vt~gG~~t~DEMC~~fl 335 (431)
..+.+.+|+.+.+.|.|..+..+...+|--+.... |...+
T Consensus 5 ~~v~~~~G~svtl~C~~s~~~~~~~~~Wyrq~~g~-~~~li 44 (106)
T 2frg_P 5 EVLQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEG-CQPLV 44 (106)
T ss_dssp EEEEECTTCCEEEEEECCGGGTTSEEEEEEEETTE-EEEEE
T ss_pred cEEEEecCCcEEEEeEecCCcccCcEEEEECCCCC-CcEEE
Confidence 35788999999999999865444334443333334 54433
No 10
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Probab=49.67 E-value=17 Score=30.07 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=25.9
Q ss_pred cceEEecCCceEeCCCCEEEEEEEEecCCCCceeEe
Q psy1353 287 FQEIRLLKHPVTVLPGDALITTCVYNTQSRANITLG 322 (431)
Q Consensus 287 ~Q~~~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt~g 322 (431)
|+.+.+-+..+.+.+|+.+.+.|.|..+..+...+|
T Consensus 9 ~~~v~Q~p~~v~v~~G~~vtL~C~~~~~~~~~~v~W 44 (134)
T 3bik_B 9 WRSLTFYPAWLTVSEGANATFTCSLSNWSEDLMLNW 44 (134)
T ss_dssp -CCEEEECSEEEEETTSCEEEEEEESSCCTTCEEEE
T ss_pred CccEEECCCeEEEeCCCCEEEEEEeCCCCCCcEEEE
Confidence 555666677899999999999999987643333343
No 11
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Probab=48.85 E-value=17 Score=28.76 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=22.7
Q ss_pred EecCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 291 RLLKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 291 ~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
..-+..+.+.+|+.+.+.|.|.++....+.|
T Consensus 5 ~q~p~~~~v~~G~~vtL~C~~~~~~~~~v~W 35 (112)
T 1fo0_B 5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSW 35 (112)
T ss_dssp EEECSEEECCTTCCEEEEEEESCTTCCEEEE
T ss_pred EeCCCeEEEecCCcEEEEEEeCCCCCceEEE
Confidence 3445668999999999999997554444443
No 12
>4dou_A Adiponectin; single-chain globular domain, calcium binding, C1Q-like DOMA growth factor, serum, hormone; 2.00A {Homo sapiens} PDB: 1c3h_A 1c28_A
Probab=47.47 E-value=80 Score=32.25 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=41.4
Q ss_pred CCCCeEEEEEeeecccccceEEEEEEeCCeEEEeeeecCCCCCCcceEEecCCceEeCCCCEEEEEEE
Q psy1353 243 PSKGIKVFGSQLHTHLTGKRVYTRHIRNGRELAELNRDNHYSPHFQEIRLLKHPVTVLPGDALITTCV 310 (431)
Q Consensus 243 p~~~I~ifa~~lH~HllGr~v~~~~iR~G~e~~~l~~d~~yDfn~Q~~~~l~~~v~v~pGD~L~~~C~ 310 (431)
|..|+..|++..+ ..++.+++.+.+||++.... .++..+-..+..- -.--+.+.+||++-++-.
T Consensus 208 pv~GvY~Fs~~~~--~~~~~~~v~L~~Ng~~~~~~-~~~~~~~~~~~aS-~s~vL~L~~GD~Vwl~l~ 271 (442)
T 4dou_A 208 NIPGLYYFAYHIT--VYMKDVKVSLFKKDKAMLFT-YDQYQENNVDQAS-GSVLLHLEVGDQVWLQVY 271 (442)
T ss_dssp CSCEEEEEEEEEE--EEEEEEEEEEEETTEEEEEE-EECCBTTBCEEEE-EEEEEEECTTCEEEEEEC
T ss_pred ccceEEEEEEEEE--ECCCEEEEEEEECCEEEEEE-EccCCCCcccccc-ceEEEEECCCCEEEEEEe
Confidence 4568999988765 45788999999999876433 3322322222211 112368899999999863
No 13
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=47.21 E-value=23 Score=27.66 Aligned_cols=31 Identities=6% Similarity=0.178 Sum_probs=23.6
Q ss_pred EecCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 291 RLLKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 291 ~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
..-++.+.+..|+.+.+.|.+.......+.|
T Consensus 5 ~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W 35 (108)
T 1qfw_M 5 TQSPKSMSMSVGERVTLSCKASETVDSFVSW 35 (108)
T ss_dssp EEECSCEECCTTCCEEEEEEESSCCCSCEEE
T ss_pred EEeCCeEEEcCCCCEEEEeeeCCCCCcEEEE
Confidence 3345678999999999999998765444554
No 14
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}
Probab=45.25 E-value=20 Score=29.27 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=21.7
Q ss_pred CCceEeCCCCEEEEEEEEecCCCCceeEe
Q psy1353 294 KHPVTVLPGDALITTCVYNTQSRANITLG 322 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~r~~vt~g 322 (431)
++.+.+.+|+.+.+.|.|.....+...+|
T Consensus 9 p~~v~~~~G~svtL~C~~s~~~~~~~~~W 37 (124)
T 2nms_A 9 PTTVNGLERGSLTVQCVYRSGWETYLKWW 37 (124)
T ss_dssp CSEEEEETTCCEEEEEEECTTCTTSEEEE
T ss_pred ccEEEEeCCCCEEEEeEEeCCcccccEEE
Confidence 35688999999999999987644433444
No 15
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1
Probab=44.79 E-value=26 Score=27.22 Aligned_cols=29 Identities=10% Similarity=0.267 Sum_probs=23.2
Q ss_pred cCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 293 LKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 293 l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
-+..+.+..|+.+.++|.+.......+.|
T Consensus 7 ~p~~~~~~~G~~v~L~C~~~~~~~~~v~W 35 (108)
T 1jhl_L 7 SPSYLVASPGETITINCRASKSISKSLAW 35 (108)
T ss_dssp ECSEEEECTTSCEEEEEEESSCCTTCEEE
T ss_pred cCCeeEEcCCCCEEEEeEECCCCCceEEE
Confidence 34568999999999999998876555555
No 16
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=44.45 E-value=16 Score=28.87 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=23.6
Q ss_pred eEEecCCceEeCCCCEEEEEEEEecC-CCCceeE
Q psy1353 289 EIRLLKHPVTVLPGDALITTCVYNTQ-SRANITL 321 (431)
Q Consensus 289 ~~~~l~~~v~v~pGD~L~~~C~Ydts-~r~~vt~ 321 (431)
.+..-++++.+.+|+.+.+.|.|..+ ....+.|
T Consensus 2 ~v~q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W 35 (116)
T 1tvd_A 2 KVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFW 35 (116)
T ss_dssp EEECCSCCEEEETTCCEEECCEEECCSSSCCEEE
T ss_pred ceecCCCcEEEecCCeEEEEeEeEcCCCCcEEEE
Confidence 33444567999999999999999865 3334444
No 17
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R
Probab=44.24 E-value=30 Score=28.48 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=24.5
Q ss_pred ceEEecCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 288 QEIRLLKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 288 Q~~~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
|.+.+-+..+.+.+|+.+.++|.+.+.....+.|
T Consensus 5 ~~v~Q~p~~~~v~~G~~vtL~C~~s~~~~~~v~W 38 (128)
T 1nez_G 5 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSW 38 (128)
T ss_dssp CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEE
T ss_pred CeeEECCCeEEEcCCCCEEEEEEeCccCCCcEEE
Confidence 3445556678999999999999997664444433
No 18
>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...
Probab=44.16 E-value=27 Score=27.28 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=22.8
Q ss_pred cCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 293 LKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 293 l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
-++.+.+..|+.+.++|.|.......+.|
T Consensus 9 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W 37 (109)
T 2q20_A 9 SPSSLSASVGDRVTITCQASQDISNYLNW 37 (109)
T ss_dssp ECSEEEECTTCCEEEEEEESSCCTTCEEE
T ss_pred eCCEEEecCCCcEEEEEeeccCCCCcEEE
Confidence 35678999999999999998765445554
No 19
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=43.65 E-value=43 Score=28.99 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=29.7
Q ss_pred EEEeCCeEEEeeeecCCCCCCcceEEec---CCceEeCCCCEEEEEEE
Q psy1353 266 RHIRNGRELAELNRDNHYSPHFQEIRLL---KHPVTVLPGDALITTCV 310 (431)
Q Consensus 266 ~~iR~G~e~~~l~~d~~yDfn~Q~~~~l---~~~v~v~pGD~L~~~C~ 310 (431)
..+|+|.+..+.+...-+-|.+..+.-- .+.++|++||++..+-+
T Consensus 29 ~v~~~~~~v~v~~~~~~~~~~~~~~~~~g~~~p~i~V~~GD~V~~~~t 76 (154)
T 2cal_A 29 TVTYSGKTVHVVAAAVLPGFPFPSFEVHDKKNPTLEIPAGATVDVTFI 76 (154)
T ss_dssp EEECCSSEEEEEEEESCTTSCSSCEEETTEESCEEEECTTCEEEEEEE
T ss_pred eEEecCCEEEEEEEEcccCCccccccccCCCCCEEEEeCCCEEEEEEE
Confidence 4567887776666655555555444332 25799999999887544
No 20
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*
Probab=42.71 E-value=14 Score=29.36 Aligned_cols=25 Identities=24% Similarity=0.545 Sum_probs=20.4
Q ss_pred EEecCCceEeCCCCEEEEEEEEecC
Q psy1353 290 IRLLKHPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 290 ~~~l~~~v~v~pGD~L~~~C~Ydts 314 (431)
+..-+..+.+..|+.+.+.|.|+..
T Consensus 3 v~q~p~~~~~~~G~~vtL~C~~~~~ 27 (116)
T 1fo0_A 3 VTQTQTSISVMEKTTVTMDCVYETQ 27 (116)
T ss_dssp EECCCCEEEEETTCCEEECCEECCC
T ss_pred cCcCCCcEEEecCCcEEEEeEecCC
Confidence 3334567899999999999999876
No 21
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=42.45 E-value=99 Score=26.24 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=39.8
Q ss_pred CCCCeEEEEEeeecccccceEEEEEEeCCeEEEeeeecCCCCCCcceEEecCCceEeCCCCEEEEEEE
Q psy1353 243 PSKGIKVFGSQLHTHLTGKRVYTRHIRNGRELAELNRDNHYSPHFQEIRLLKHPVTVLPGDALITTCV 310 (431)
Q Consensus 243 p~~~I~ifa~~lH~HllGr~v~~~~iR~G~e~~~l~~d~~yDfn~Q~~~~l~~~v~v~pGD~L~~~C~ 310 (431)
|..|+..|.+.... .+..+.+.+.+||...........-.-.++.. ...--+.+.+||++-++..
T Consensus 45 Pv~G~Y~Fs~~~~~--~~~~~~~~L~kNg~~~~~~~~~~~~~~~~~~~-s~s~il~L~~GD~V~v~~~ 109 (148)
T 4f3j_A 45 QVPGVYYFAVHATV--YRASLQFDLVKNGESIASFFQFFGGWPKPASL-SGGAMVRLEPEDQVWVQVG 109 (148)
T ss_dssp CSCEEEEEEEEEEE--EEEEEEEEEEETTEEEEEEEECCCSCSSCEEE-EEEEEEEECTTCEEEEECC
T ss_pred CcceEEEEEEEEcc--CCCceEEEEEECCeEEEEEEeccCCCCccceE-eeEEEEEcCCCCEEEEEEE
Confidence 56789988876544 45667788889998754433222112222221 2223468999999988864
No 22
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Probab=41.14 E-value=31 Score=27.38 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=19.9
Q ss_pred ecCCceEeCCCCEEEEEEEEecCC
Q psy1353 292 LLKHPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 292 ~l~~~v~v~pGD~L~~~C~Ydts~ 315 (431)
.-++.+.+.+|+.+.+.|.+....
T Consensus 5 q~p~~~~v~~G~~v~L~C~~~~~~ 28 (113)
T 1sq2_N 5 QTPRSVTKETGESLTINCVLRDAS 28 (113)
T ss_dssp EECSEEEECTTCCEEEEEEECSCS
T ss_pred eCCccEEEecCCCEEEEEEECCCc
Confidence 345678999999999999998654
No 23
>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A
Probab=40.50 E-value=28 Score=28.04 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=22.7
Q ss_pred cCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 293 LKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 293 l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
-++.+.+..|+.+.+.|.|.......+.|
T Consensus 9 ~p~~v~v~~G~~vtL~C~~~~~~~~~v~W 37 (119)
T 2e27_L 9 SPSSLSASLGGKVTITCKANQDIKKKIAW 37 (119)
T ss_dssp ECSEEEEETTCCEEEEEEESSCCTTCEEE
T ss_pred cCCeEEEeCCCCEEEEEEeCCCCCceEEE
Confidence 35668999999999999998765455544
No 24
>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A
Probab=40.23 E-value=29 Score=27.43 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=22.1
Q ss_pred CCceEeCCCCEEEEEEEEecC-CCCceeE
Q psy1353 294 KHPVTVLPGDALITTCVYNTQ-SRANITL 321 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts-~r~~vt~ 321 (431)
+..+.+.+|+.+.+.|.|... ....+.|
T Consensus 8 p~~~~~~~G~~v~L~C~~~~~~~~~~v~W 36 (115)
T 2otu_A 8 SSSASFSLGASAKLTCTLSSQHSTYTIEW 36 (115)
T ss_dssp CCCEECCTTCCEEEEEEECGGGTTCCEEE
T ss_pred CCCEEECCCCCEEEEEEecCCCCCeEEEE
Confidence 678999999999999999875 3444444
No 25
>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A
Probab=39.86 E-value=34 Score=26.83 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=23.6
Q ss_pred EEecCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 290 IRLLKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 290 ~~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
+..-++.+.+..|+.+.+.|.|.......+.|
T Consensus 7 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W 38 (111)
T 1i3g_L 7 LTQSHKFMSTSVGDRVSITCKASQDVGTAVAW 38 (111)
T ss_dssp EEESCSEEECCTTCCEEEEEEESSCCTTCEEE
T ss_pred EEEeCCEEEEcCCCCEEEEEEeCCCCCCCEEE
Confidence 33445668999999999999998765444444
No 26
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B
Probab=38.62 E-value=29 Score=27.16 Aligned_cols=33 Identities=9% Similarity=0.256 Sum_probs=24.2
Q ss_pred ceEEecCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 288 QEIRLLKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 288 Q~~~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
|.+..-+..+.+..|+.+.+.|.++... ..+.|
T Consensus 2 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~-~~v~W 34 (113)
T 1h5b_A 2 DQVEQSPSALSLHEGTDSALRCNFTTTM-RSVQW 34 (113)
T ss_dssp CSEEEECSEEEEETTCCEEEEEEESSCC-SEEEE
T ss_pred CceEECCCEEEEecCCcEEEEEEECCCC-ceEEE
Confidence 3444556778999999999999998753 34444
No 27
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}
Probab=38.10 E-value=25 Score=27.50 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=25.6
Q ss_pred CCceEeCCCCEEEEEEEEecCCCCceeEeCCCCchhhcc
Q psy1353 294 KHPVTVLPGDALITTCVYNTQSRANITLGGFAITDEMCV 332 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~r~~vt~gG~~t~DEMC~ 332 (431)
++.+.+..|+.+.+.|.|+.........|=.+...+.|.
T Consensus 8 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~ 46 (113)
T 1zox_A 8 PEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCK 46 (113)
T ss_dssp CSEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCE
T ss_pred CCEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCe
Confidence 456899999999999999876544323332333334443
No 28
>4dou_A Adiponectin; single-chain globular domain, calcium binding, C1Q-like DOMA growth factor, serum, hormone; 2.00A {Homo sapiens} PDB: 1c3h_A 1c28_A
Probab=37.88 E-value=1.1e+02 Score=31.31 Aligned_cols=66 Identities=9% Similarity=0.025 Sum_probs=42.1
Q ss_pred CCCCeEEEEEeeecccccceEEEEEEeCCeEEEeeeecCCCCCCcceEEecCCceEeCCCCEEEEEEEEe
Q psy1353 243 PSKGIKVFGSQLHTHLTGKRVYTRHIRNGRELAELNRDNHYSPHFQEIRLLKHPVTVLPGDALITTCVYN 312 (431)
Q Consensus 243 p~~~I~ifa~~lH~HllGr~v~~~~iR~G~e~~~l~~d~~yDfn~Q~~~~l~~~v~v~pGD~L~~~C~Yd 312 (431)
|..|+..|++..+.. ++.+.+.+.+||++......+. -+-+++.. ...--+.+.+||++-++...+
T Consensus 67 pv~GvY~Fsf~~~~~--~~~~~v~L~~Ng~~~~~~~~~~-~~~~~~~~-S~s~vL~L~~GD~Vwv~l~~~ 132 (442)
T 4dou_A 67 NIPGLYYFAYHITVY--MKDVKVSLFKKDKAMLFTYDQY-QENNVDQA-SGSVLLHLEVGDQVWLQVYGE 132 (442)
T ss_dssp CSCEEEEEEEEEEEE--EEEEEEEEEETTEEEEEEEECC-BTTBCEEE-EEEEEEEECTTCEEEEEEC--
T ss_pred CCCEEEEEEEEEEeC--CCcEEEEEEECCEEEEEEEEec-CCCCcccc-chheEEEEcCCCEEEEEEeec
Confidence 356899999876653 6788999999998753322221 11122221 223357899999999998654
No 29
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Probab=36.72 E-value=30 Score=27.54 Aligned_cols=25 Identities=16% Similarity=0.100 Sum_probs=20.3
Q ss_pred EecCCceEeCCCCEEEEEEEEecCC
Q psy1353 291 RLLKHPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 291 ~~l~~~v~v~pGD~L~~~C~Ydts~ 315 (431)
..-+..+.+.+|+.+.+.|.|....
T Consensus 4 ~q~p~~v~v~~G~~vtL~C~~~~~~ 28 (114)
T 2hp4_A 4 RVSPLDRTWNLGETVELKCQVLLSN 28 (114)
T ss_dssp EEECCSCCCCTTCCEEEEEEECCSS
T ss_pred EeCCCEEEEcCCCCEEEEEEeecCC
Confidence 3445678999999999999998654
No 30
>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L
Probab=35.96 E-value=38 Score=28.79 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=23.9
Q ss_pred EEecCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 290 IRLLKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 290 ~~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
+..-++.+.+..|+.+.++|.|.......+.|
T Consensus 19 v~q~p~~v~v~~G~sVtL~C~~s~~~~~~v~W 50 (146)
T 2yc1_B 19 LTQSPATLSVSPGERATLSCRASQSVRSYLAW 50 (146)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCTTCEEE
T ss_pred EEEeCCEEEEecCCCEEEEEEECCCCCCEEEE
Confidence 33345678999999999999998765444544
No 31
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Probab=35.58 E-value=46 Score=26.38 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=19.0
Q ss_pred CCceEeCCCCEEEEEEEEecCC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~ 315 (431)
+..+.+.+|+.+.+.|.|..+.
T Consensus 6 p~~~~v~~G~~vtL~C~~~~~~ 27 (117)
T 3bp6_A 6 PAWLTVSEGANATFTCSLSNWS 27 (117)
T ss_dssp CSEEEECTTCCEEEEEEESSCC
T ss_pred CCcEEEeCCCCEEEEeEeecCC
Confidence 4568999999999999998764
No 32
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A
Probab=35.07 E-value=40 Score=26.11 Aligned_cols=28 Identities=14% Similarity=0.376 Sum_probs=22.1
Q ss_pred CCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 294 KHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
++.+.+..|+.+.+.|.|.......+.|
T Consensus 8 p~~~~~~~G~~v~L~C~~~~~~~~~v~W 35 (107)
T 1i8k_A 8 PASLSVATGEKVTIRCMTSTDIDDDMNW 35 (107)
T ss_dssp CSEEECCTTCCEEEEEEESSCCTTCEEE
T ss_pred CCeEEecCCCCEEEEEEECCCCCCcEEE
Confidence 4568999999999999998765444544
No 33
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=34.98 E-value=26 Score=35.05 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=23.6
Q ss_pred Cc-ceEEecCCceEeCCCCEEEEEEEEecCC
Q psy1353 286 HF-QEIRLLKHPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 286 n~-Q~~~~l~~~v~v~pGD~L~~~C~Ydts~ 315 (431)
|| |.++.|++|+.|.+||.|..+.++.-..
T Consensus 318 HW~Q~v~~L~~Pi~V~~G~~I~g~i~~~~~~ 348 (376)
T 4hc4_A 318 HWKQALLYLNEPVQVEQDTDVSGEITLLPSR 348 (376)
T ss_dssp TTCEEEEEEEEEEEECTTCEEEEEEEEEECS
T ss_pred ceeeEEEEeCCceEeCCCCEEEEEEEEEECC
Confidence 45 7889999999999999998665554443
No 34
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}
Probab=34.81 E-value=42 Score=27.17 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=23.1
Q ss_pred EEecCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 290 IRLLKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 290 ~~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
+..-++.+.+.+|+.+.+.|.|..+....+.|
T Consensus 8 V~Q~p~~~~v~~G~~vtL~C~~~~~~~~~v~W 39 (125)
T 3r8b_B 8 VTQSPRNKVAVTGEKVTLSCKQTNSYFNNMYW 39 (125)
T ss_dssp EEEECSEEEEETTCCEEEEEEEESCCCSEEEE
T ss_pred EEecCCeEEEcCCCcEEEEEEECCCCCCeEEE
Confidence 33445678999999999999998754333433
No 35
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Probab=33.74 E-value=25 Score=28.67 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=26.5
Q ss_pred cCCceEeCCCCEEEEEEEEecCCC-CceeEeCCCCchhhcccee
Q psy1353 293 LKHPVTVLPGDALITTCVYNTQSR-ANITLGGFAITDEMCVNYI 335 (431)
Q Consensus 293 l~~~v~v~pGD~L~~~C~Ydts~r-~~vt~gG~~t~DEMC~~fl 335 (431)
-+..+.+.+|+.+.+.|.|+.... ....+|--+...+-|...+
T Consensus 16 ~~~~v~~~~G~svtL~C~~s~~~~~~~~v~W~rq~~~~~~~~li 59 (122)
T 1hkf_A 16 KAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLV 59 (122)
T ss_dssp CCEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEE
T ss_pred CCceEEEecCCCEEEEeEccCCCCcccEEEEEcCCCCCCceEEE
Confidence 345689999999999999987532 2233442333333355443
No 36
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}
Probab=33.73 E-value=22 Score=27.68 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=18.5
Q ss_pred CceEeCCCCEEEEEEEEecCCC
Q psy1353 295 HPVTVLPGDALITTCVYNTQSR 316 (431)
Q Consensus 295 ~~v~v~pGD~L~~~C~Ydts~r 316 (431)
+.+.+..|+.+.+.|.|+....
T Consensus 4 ~~v~~~~G~~v~L~C~~~~~~~ 25 (110)
T 2q87_A 4 RTVAGPVGGSLSVQCPYEKEHR 25 (110)
T ss_dssp EEEEECTTSCEEEEEECCGGGT
T ss_pred cEEEEeCCCcEEEEeEecCCcC
Confidence 3578999999999999987643
No 37
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1
Probab=33.34 E-value=16 Score=30.84 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=19.1
Q ss_pred CCceEeCCCCEEEEEEEEecCC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~ 315 (431)
+..+.+.+|+.+.+.|.|....
T Consensus 7 p~~v~v~~G~~vtL~C~~s~~~ 28 (142)
T 2ol3_A 7 QTSISVMEKTTVTMDCVYETQD 28 (142)
T ss_dssp CSEEEEETTCCEEECCBCCCCC
T ss_pred CCeEEEecCCCEEEEEEecCCc
Confidence 4568999999999999998765
No 38
>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*
Probab=32.15 E-value=38 Score=26.56 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=18.4
Q ss_pred CCceEeCCCCEEEEEEEEecC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts 314 (431)
+..+.+.+|+.+.+.|.|...
T Consensus 5 p~~~~~~~G~~vtL~C~~~~~ 25 (115)
T 2atp_B 5 PSSLLVQTNHTAKMSCEVKSI 25 (115)
T ss_dssp CSEEEECTTSCEEEEEECCSS
T ss_pred CCCEEEcCCCcEEEEEEecCC
Confidence 456899999999999999875
No 39
>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...
Probab=31.94 E-value=51 Score=26.37 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=22.4
Q ss_pred CCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 294 KHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
++.+.+..|+.+.+.|.|.......+.|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W 35 (120)
T 1mqk_L 8 PVSLSASVGETVTITCRASENIYSYLAW 35 (120)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEE
T ss_pred CCeEEEcCCCcEEEEEEeCCCCCceEEE
Confidence 4568999999999999998765445554
No 40
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Probab=30.74 E-value=55 Score=25.54 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=19.1
Q ss_pred CCceEeCCCCEEEEEEEEecCC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~ 315 (431)
+..+.+.+|+.+.+.|.|....
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~ 29 (113)
T 1dlf_L 8 PLSLPVSLGNQASISCRSSQSL 29 (113)
T ss_dssp CSEEEECTTCCEEEEEEESSCC
T ss_pred CCEEEEcCCCCEEEEEEccccc
Confidence 4568999999999999998764
No 41
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=30.02 E-value=39 Score=25.42 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=24.0
Q ss_pred cCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 293 LKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 293 l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
..+.+++..|+.+.++|.+.......++|
T Consensus 12 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W 40 (108)
T 3m45_A 12 LTQNVTVVEGGTAILTCRVDQNDNTSLQW 40 (108)
T ss_dssp ECCCEEEETTSCEEEEEEESSCSSCCEEE
T ss_pred cCCeeEEEeCCcEEEEeEEcCCCccEEEE
Confidence 35678999999999999999876666666
No 42
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A
Probab=29.93 E-value=67 Score=25.06 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=18.9
Q ss_pred CCceEeCCCCEEEEEEEEecCC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~ 315 (431)
+..+.+..|+.+.+.|.+....
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~~ 28 (111)
T 2ywz_A 7 PRTITKETGESLTIKCVLKDHS 28 (111)
T ss_dssp CSEEEECTTCCEEEEEEEESCS
T ss_pred CCcEEEccCCCEEEEeEECCCC
Confidence 4568999999999999998763
No 43
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Probab=29.23 E-value=44 Score=29.36 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=25.7
Q ss_pred ceEEecCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 288 QEIRLLKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 288 Q~~~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
|.+.+-+..+.+.+|+.+.+.|.|.......+.|
T Consensus 2 ~~v~Q~p~~v~v~~G~~v~L~C~~s~~~~~~v~W 35 (194)
T 1lp9_E 2 DSVTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFW 35 (194)
T ss_dssp CEEEECCSEEEEETTSCEEECEEEECSSSCCEEE
T ss_pred CccEecCCEEEEecCCCEEEEEEeCCCCCceEEE
Confidence 4555556789999999999999998765444444
No 44
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin variable domain-like beta-sandwich, homodimer, immune system; 2.00A {Mus musculus} SCOP: b.1.1.1
Probab=29.19 E-value=47 Score=26.19 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=18.3
Q ss_pred CCceEeCCCCEEEEEEEEecCC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~ 315 (431)
+..+.+.+|+.+.+.|.|.++.
T Consensus 6 p~~~~~~~G~~v~L~C~~~~~~ 27 (117)
T 1dqt_A 6 PSVVLASSHGVASFPCEYSPSH 27 (117)
T ss_dssp CSEEECCTTSCEEEEEEEESCC
T ss_pred CceEEEeCCCeEEEEEEeeCCC
Confidence 3568899999999999998544
No 45
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=29.04 E-value=52 Score=28.90 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=26.3
Q ss_pred ceEEecCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 288 QEIRLLKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 288 Q~~~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
|.+..-++.+.+..|+.+.+.|.+.......+.|
T Consensus 2 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W 35 (245)
T 3nfj_J 2 QTIHQWPATLVQPVGSPLSLECTVEGTSNPNLYW 35 (245)
T ss_dssp CEEEEECSEEEEETTCCEEEEEEEESCSSCEEEE
T ss_pred CeeeCCCceEEecCCCCEEEEEEecCCCCceEEE
Confidence 4555566789999999999999998765555554
No 46
>3tpk_A Immunoglobulin heavy chain antibody variable DOMA; immunoglobulin heavy chain domains, VHH, complementarity DET regions, CDR, oligomer-specific; 1.30A {Camelidae} PDB: 3ln9_A* 1zv5_A
Probab=28.28 E-value=50 Score=27.48 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=17.7
Q ss_pred CceEeCCCCEEEEEEEEecC
Q psy1353 295 HPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 295 ~~v~v~pGD~L~~~C~Ydts 314 (431)
.++.+.+|+.+.+.|.|...
T Consensus 12 ~~~~v~~G~~vtL~C~~s~~ 31 (136)
T 3tpk_A 12 GGGSVQPGGSLRLSCTASGY 31 (136)
T ss_dssp CCEEECTTCCEEEEEEEEES
T ss_pred CCEEEccCCCEEEEEEEccc
Confidence 46899999999999999764
No 47
>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A
Probab=28.24 E-value=36 Score=26.71 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=17.7
Q ss_pred CceEeCCCCEEEEEEEEecC
Q psy1353 295 HPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 295 ~~v~v~pGD~L~~~C~Ydts 314 (431)
+++.+.+|+.+.+.|.|...
T Consensus 6 ~~~~~~~G~~v~L~C~~~~~ 25 (116)
T 3bj9_1 6 PAMSSALGTTIRLTCTLRND 25 (116)
T ss_dssp SEEEEETTCCEEEEEEECSS
T ss_pred CcEEEcCCCcEEEEEEeecC
Confidence 46899999999999999865
No 48
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A
Probab=27.64 E-value=33 Score=30.48 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=23.6
Q ss_pred eEEecCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 289 EIRLLKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 289 ~~~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
.+.+ +..+.+.+|+.+.+.|.|.......+.|
T Consensus 2 ~v~Q-p~~~~v~~G~~vtL~C~~s~~~~~~v~W 33 (200)
T 2nw2_A 2 NIDQ-PTEMTATEGAIVQINCTYQTSGFNGLFW 33 (200)
T ss_dssp CCBC-CSEEEEETTCCEEEEEECCCSSCCCEEE
T ss_pred ceEC-CCeEEEccCCCEEEEEEECCCCCceEEE
Confidence 3444 5678999999999999997765444433
No 49
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C
Probab=27.06 E-value=61 Score=26.04 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=21.1
Q ss_pred ecCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 292 LLKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 292 ~l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
.-+..+.+.+|+.+.+.|.|+. ....+.|
T Consensus 6 q~p~~v~v~~G~~vtL~C~~~~-~~~~v~W 34 (121)
T 2oi9_C 6 QSPRNKVAVTGEKVTLSCNQTN-NHNNMYW 34 (121)
T ss_dssp EECSEEEEETTCCEEEEEEESS-CCSEEEE
T ss_pred eCCCeEEecCCCcEEEEEEecC-CCCeEEE
Confidence 3456789999999999999864 3334443
No 50
>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A
Probab=26.73 E-value=49 Score=25.72 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=19.1
Q ss_pred CCceEeCCCCEEEEEEEEecCC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~ 315 (431)
+..+.+..|+.+.+.|.|....
T Consensus 8 p~~~~~~~G~~v~L~C~~~~~~ 29 (111)
T 1j05_L 8 PASLAVSLGQRATMSCRAGESV 29 (111)
T ss_dssp CSEEECCTTSCEEEEEEESSCC
T ss_pred CCEEEEeCCCCEEEEeecCCCc
Confidence 4568999999999999998765
No 51
>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=25.99 E-value=71 Score=26.89 Aligned_cols=28 Identities=11% Similarity=0.299 Sum_probs=21.4
Q ss_pred CCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 294 KHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
+..+.+.+|+.+.+.|.|..+....+.|
T Consensus 7 p~~v~v~~G~~vtL~C~~s~~~~~~v~W 34 (143)
T 3u6r_L 7 PATLSLSPGERATLSCRASQSVNKYLAW 34 (143)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEE
T ss_pred CCEEEEeCCCCEEEEEEECCCCceeeEE
Confidence 4568999999999999998865333433
No 52
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}
Probab=25.83 E-value=47 Score=26.07 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=21.4
Q ss_pred CCceEeCCCCEEEEEEEEecCC-CCceeE
Q psy1353 294 KHPVTVLPGDALITTCVYNTQS-RANITL 321 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~-r~~vt~ 321 (431)
+..+.+..|+.+.+.|.++... ...+.|
T Consensus 14 p~~~~~~~G~~v~L~C~~~~~~~~~~v~W 42 (120)
T 2yz1_A 14 EKSVSVAAGDSTVLNCTLTSLLPVGPIKW 42 (120)
T ss_dssp SSEEEECTTCCEEECCEESCCCSCCCEEE
T ss_pred CceEEEeCCCCEEEEeEECCCCCCcEEEE
Confidence 4568999999999999998763 234444
No 53
>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}
Probab=25.70 E-value=47 Score=26.72 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=19.2
Q ss_pred CCceEeCCCCEEEEEEEEecCC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~ 315 (431)
++.+.+.+|+.+.+.|.|....
T Consensus 8 p~~v~v~~G~~v~L~C~~~~~~ 29 (126)
T 4ffy_L 8 PASLAVSLGQRATISCRASESV 29 (126)
T ss_dssp CSEEEEETTSCEEEEEEESSCC
T ss_pred CCeEEEeCCCCEEEEEecCCCc
Confidence 4568999999999999998875
No 54
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}
Probab=25.66 E-value=55 Score=25.39 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=18.7
Q ss_pred CCceEeCCCCEEEEEEEEecCC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~ 315 (431)
++.+.+.+|+.+.++|.+....
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~ 28 (108)
T 2coq_A 7 PRIATKETGESLTINCVLRDTA 28 (108)
T ss_dssp CSEEEECTTCCEEEEEEECCSS
T ss_pred CceEEEcCCCCEEEEeEeCCCc
Confidence 4568999999999999997653
No 55
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*
Probab=25.50 E-value=28 Score=27.40 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=16.8
Q ss_pred CceEeCCCCEEEEEEEEec
Q psy1353 295 HPVTVLPGDALITTCVYNT 313 (431)
Q Consensus 295 ~~v~v~pGD~L~~~C~Ydt 313 (431)
+.+.+..|+.+.+.|.|..
T Consensus 4 ~~v~~~~G~~vtL~C~~~~ 22 (116)
T 3bia_X 4 DTIIGFLGQPVTLPCHYLS 22 (116)
T ss_dssp EEEEEETTSCEEECCBCTT
T ss_pred cEEEEeeCCcEEEEEEeeC
Confidence 4688999999999999983
No 56
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}
Probab=25.39 E-value=65 Score=28.23 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=22.5
Q ss_pred EEecCCceEeCCCCEEEEEEEEecCCCCcee
Q psy1353 290 IRLLKHPVTVLPGDALITTCVYNTQSRANIT 320 (431)
Q Consensus 290 ~~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt 320 (431)
+.+-+..+.+.+|+.+.+.|.|.+.....+.
T Consensus 12 v~Q~P~~v~v~~G~sVtL~C~~s~~~~~~v~ 42 (166)
T 3dmm_C 12 LRIFPKKMDAELGQKVDLVCEVLGSVSQGCS 42 (166)
T ss_dssp EEEECSCBCCCTTCCEEEEEEEESSSCCEEE
T ss_pred EEEeCCeEEEcCCCCEEEEEEEeCCCCceEE
Confidence 4444567899999999999999844333333
No 57
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A
Probab=25.25 E-value=75 Score=26.10 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.0
Q ss_pred cCCceEeCCCCEEEEEEEEecC
Q psy1353 293 LKHPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 293 l~~~v~v~pGD~L~~~C~Ydts 314 (431)
-++.+.+.+|+.+.+.|.|...
T Consensus 6 ~p~~v~v~~G~svtL~C~~s~~ 27 (126)
T 3moq_A 6 TPRTATKETGESLTINCVLRDA 27 (126)
T ss_dssp ECSEEEEETTCCEEEEEEEESC
T ss_pred CCceEEEeCCCCEEEEEEeecC
Confidence 3556899999999999999875
No 58
>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A
Probab=25.18 E-value=46 Score=25.85 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=21.3
Q ss_pred CCceEeCCCCEEEEEEE-EecCC-CCceeE
Q psy1353 294 KHPVTVLPGDALITTCV-YNTQS-RANITL 321 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~-Ydts~-r~~vt~ 321 (431)
++.+.+.+|+.+.+.|. |.... ...+.|
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W 36 (109)
T 1pew_A 7 PHSVSESPGKTVTISCTRSSGNIASNYVQW 36 (109)
T ss_dssp CSEEEECTTSCEEEEEEESSSCGGGSCCEE
T ss_pred CCCEEEcCCCCEEEEEEeCCCCCCCccEEE
Confidence 46789999999999999 98654 234444
No 59
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like domain, immunoglobulin-like, immune system receptor; HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Probab=25.14 E-value=27 Score=29.33 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=16.7
Q ss_pred ceEeCCCCEEEEEEEEecC
Q psy1353 296 PVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 296 ~v~v~pGD~L~~~C~Ydts 314 (431)
.+.+.+|+.+.+.|.|++.
T Consensus 13 ~vs~~~G~svtL~C~~s~~ 31 (127)
T 1q8m_A 13 KYELKEGQTLDVKCDYTLE 31 (127)
T ss_dssp EEEEETTCCEEEEEECCCG
T ss_pred EEEEecCCCEEEEEEECCc
Confidence 4789999999999999843
No 60
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Probab=24.38 E-value=64 Score=25.54 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.2
Q ss_pred CceEeCCCCEEEEEEEEecCC
Q psy1353 295 HPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 295 ~~v~v~pGD~L~~~C~Ydts~ 315 (431)
+++.+..|+.+.+.|.|....
T Consensus 8 ~~~~~~~G~~v~L~C~~~~~~ 28 (120)
T 1oaq_L 8 SALTTSPGETVTLTCRSSTGA 28 (120)
T ss_dssp SEEEECTTCEEEEEEEETTBC
T ss_pred CcEEEcCCCCEEEEEEeCCCc
Confidence 458999999999999998764
No 61
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Probab=24.12 E-value=69 Score=26.53 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.3
Q ss_pred CceEeCCCCEEEEEEEEecCC
Q psy1353 295 HPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 295 ~~v~v~pGD~L~~~C~Ydts~ 315 (431)
+++.+.+|+.+.+.|.|....
T Consensus 13 ~~v~v~~G~~vtL~C~~~~~~ 33 (135)
T 1p4b_L 13 SALTTSPGETVTLTCRSSTGA 33 (135)
T ss_dssp SEEEECTTCEEEEEEEETTSS
T ss_pred CcEEEcCCCCEEEEEEecCCC
Confidence 458999999999999998764
No 62
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Probab=24.07 E-value=50 Score=29.12 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=24.4
Q ss_pred ceEEecCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 288 QEIRLLKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 288 Q~~~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
|.+..-++++.+..|+.+.+.|.|.......+.|
T Consensus 1 ~~v~q~p~~v~v~~G~~v~L~C~~s~~~~~~v~W 34 (203)
T 2bnu_A 1 QEVTQIPAALSVPEGENLVLNCSFTDSAIYNLQW 34 (203)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESCCCEEEEEE
T ss_pred CccEEcCCEEEEeCCCCEEEEEEECCCCcceEEE
Confidence 3444456789999999999999997654433433
No 63
>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B
Probab=23.32 E-value=97 Score=24.35 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.1
Q ss_pred CCceEeCCCCEEEEEEEEecC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts 314 (431)
++++.+.+|+.+.+.|.|...
T Consensus 7 p~~~~~~~G~~vtL~C~~~~~ 27 (120)
T 1n4x_H 7 SGPELKKPGETVKISCKATNY 27 (120)
T ss_dssp CCCEEECTTCCEEEEEEEESS
T ss_pred CCCEEEcCCCeEEEEEEecCc
Confidence 456899999999999999853
No 64
>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B
Probab=23.21 E-value=95 Score=24.50 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.2
Q ss_pred CCceEeCCCCEEEEEEEEecC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts 314 (431)
++++.+.+|+.+.+.|.|...
T Consensus 7 p~~~~~~~G~~vtL~C~~~~~ 27 (121)
T 1j05_H 7 SGAELVEPGASVKLSCTASGF 27 (121)
T ss_dssp CCCEEECTTCCEEEEEEEESS
T ss_pred CCCEEEeCCCcEEEEEEecCc
Confidence 457899999999999999854
No 65
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}
Probab=23.20 E-value=62 Score=26.28 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=18.9
Q ss_pred CCceEeCCCCEEEEEEEEecCC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~ 315 (431)
+..+.+..|+.+.+.|.|....
T Consensus 8 P~~~~v~~G~~vtL~C~~s~~~ 29 (129)
T 3rrq_A 8 PALLVVTEGDNATFTCSFSNTS 29 (129)
T ss_dssp CSEEEEETTSCEEEEEECCCCC
T ss_pred CCEEEEeCCCCEEEEeEecCCC
Confidence 4568999999999999998764
No 66
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=23.19 E-value=75 Score=23.89 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=13.5
Q ss_pred ceEeCCCCEEEEEEEEe
Q psy1353 296 PVTVLPGDALITTCVYN 312 (431)
Q Consensus 296 ~v~v~pGD~L~~~C~Yd 312 (431)
...+.+||.|.+.+.-+
T Consensus 58 ~~~l~~GD~l~v~g~~~ 74 (86)
T 3jxo_A 58 DTEILSGDKLYVIVSAE 74 (86)
T ss_dssp TCBCCTTCEEEEEEETT
T ss_pred CCEECCCCEEEEEECHH
Confidence 45899999999988643
No 67
>1smo_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immune system receptor, system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Probab=23.02 E-value=22 Score=28.97 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=16.7
Q ss_pred CceEeCCCCEEEEEEEEec
Q psy1353 295 HPVTVLPGDALITTCVYNT 313 (431)
Q Consensus 295 ~~v~v~pGD~L~~~C~Ydt 313 (431)
+.+.+.+|+.+.+.|.|.+
T Consensus 7 ~~~~~~~G~svtl~C~~s~ 25 (119)
T 1smo_A 7 EKYELKEGQTLDVKCDYTL 25 (119)
T ss_dssp EEEECCTTCCEEEEEECCH
T ss_pred CcEEEcCCCCEEEEEEEeC
Confidence 4578999999999999984
No 68
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Probab=22.81 E-value=70 Score=25.58 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=18.9
Q ss_pred cCCceEeCCCCEEEEEEEEecC
Q psy1353 293 LKHPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 293 l~~~v~v~pGD~L~~~C~Ydts 314 (431)
.++.+.+..|+.+.+.|.|...
T Consensus 12 ~p~~v~~~~G~~v~L~C~~~~~ 33 (132)
T 1nko_A 12 MQSSVTVQEGMCVHVRCSFSYP 33 (132)
T ss_dssp ECSEEEEETTCCEEECEEEECC
T ss_pred CCCEEEEcCCCeEEEEccccCC
Confidence 4567899999999999999853
No 69
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=22.44 E-value=59 Score=31.45 Aligned_cols=33 Identities=27% Similarity=0.494 Sum_probs=27.7
Q ss_pred CCc-ceEEecCCceEeCCCCEEEEEEEEecCCCC
Q psy1353 285 PHF-QEIRLLKHPVTVLPGDALITTCVYNTQSRA 317 (431)
Q Consensus 285 fn~-Q~~~~l~~~v~v~pGD~L~~~C~Ydts~r~ 317 (431)
.+| |.++.|++|+.|.+||.|..+..+....++
T Consensus 287 thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~ 320 (340)
T 2fyt_A 287 THWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKD 320 (340)
T ss_dssp CTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSC
T ss_pred CccccEEEEeCCceEcCCCCEEEEEEEEEECCCC
Confidence 445 778889999999999999999988877654
No 70
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=22.43 E-value=70 Score=24.61 Aligned_cols=28 Identities=14% Similarity=0.442 Sum_probs=22.2
Q ss_pred CCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 294 KHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
.+.+++..|+.+.++|.....-...++|
T Consensus 12 p~~~~v~~G~~~~l~C~~~g~P~p~v~W 39 (100)
T 3knb_A 12 PSDISIDEGKVLTVACAFTGEPTPEVTW 39 (100)
T ss_dssp CSEEEEETTSEEEEEEEEEEESCCEEEE
T ss_pred CCcEEEeCCCeEEEEEEEEEecCCEEEE
Confidence 4568899999999999998655556665
No 71
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=22.38 E-value=76 Score=24.35 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=21.7
Q ss_pred CCceEeCCCCEEEEEEEEecCCC---CceeE
Q psy1353 294 KHPVTVLPGDALITTCVYNTQSR---ANITL 321 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~r---~~vt~ 321 (431)
++.+++..|+.+.++|.++.... ..++|
T Consensus 11 p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W 41 (108)
T 3cx2_A 11 PQDGEVTVGGSITFSARVAGASLLKPPVVKW 41 (108)
T ss_dssp CCCEEEETTCCEEEEEEEECC-CCSCCEEEE
T ss_pred CCcEEEeCCCCEEEEEEECCCccCCCcEEEE
Confidence 45688999999999999997654 45655
No 72
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Probab=22.23 E-value=61 Score=29.10 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=22.9
Q ss_pred ceEEecCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 288 QEIRLLKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 288 Q~~~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
|.+.+-++++.+.+|+.+.+.|.|+ .....+.|
T Consensus 2 ~~v~Q~p~~v~v~~G~~vtL~C~~~-~~~~~v~W 34 (215)
T 1oga_D 2 QLLEQSPQFLSIQEGENLTVYCNSS-SVFSSLQW 34 (215)
T ss_dssp CCCEEECSEEEEETTCCEEEEEECS-SCCSCEEE
T ss_pred CcEEECCCEEEEecCCCEEEEEEEc-CCCceEEE
Confidence 3444446778999999999999994 33333433
No 73
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=22.23 E-value=1.2e+02 Score=22.47 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=22.7
Q ss_pred cCCceEeCCCCEEEEEEEEecC-CCCceeE
Q psy1353 293 LKHPVTVLPGDALITTCVYNTQ-SRANITL 321 (431)
Q Consensus 293 l~~~v~v~pGD~L~~~C~Ydts-~r~~vt~ 321 (431)
..+.+++..|+.+.++|..... ....++|
T Consensus 7 ~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W 36 (97)
T 2bk8_A 7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTW 36 (97)
T ss_dssp CCCCEEECTTCCEEEEEEEESCCTTCEEEE
T ss_pred cCcCEEEcCCCcEEEEEEEeccCCCCEEEE
Confidence 4457899999999999999875 4455555
No 74
>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B
Probab=22.20 E-value=81 Score=24.88 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=18.2
Q ss_pred CCceEeCCCCEEEEEEEEecC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts 314 (431)
++++.+.+|+.+.+.|.|...
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~ 27 (120)
T 1mfa_H 7 SGTVVARPGASVKMSCKASGY 27 (120)
T ss_dssp CCCEEECTTCCEEEEEEEESS
T ss_pred CCCEEEeCCCCEEEEEEeeCc
Confidence 457899999999999999853
No 75
>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A
Probab=22.13 E-value=73 Score=25.88 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.0
Q ss_pred CCceEeCCCCEEEEEEEEecCC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~ 315 (431)
+..+.+.+|+.+.+.|.|....
T Consensus 7 p~~v~v~~G~~vtL~C~~s~~~ 28 (123)
T 3t0v_A 7 SPSVSGTPGQKVTIFCSGSSSN 28 (123)
T ss_dssp CCCEEECTTCCEEEEEECCTTT
T ss_pred cCeEEEcCCCCEEEEEecCCCc
Confidence 3578999999999999998764
No 76
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=22.00 E-value=83 Score=27.81 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=24.3
Q ss_pred eEEecCCceEeCCCCEEEEEEEEecC--CCCceeE
Q psy1353 289 EIRLLKHPVTVLPGDALITTCVYNTQ--SRANITL 321 (431)
Q Consensus 289 ~~~~l~~~v~v~pGD~L~~~C~Ydts--~r~~vt~ 321 (431)
.+..-++.+.+..|+.+.+.|.+... ....+.|
T Consensus 3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W 37 (242)
T 1hxm_B 3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYW 37 (242)
T ss_dssp EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEE
T ss_pred ccCcCCceEEecCCCcEEEEEEeCCccccCceEEE
Confidence 34444567899999999999999886 3445555
No 77
>1xiw_D Immunoglobulin heavy chain variable region; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy3_B
Probab=21.90 E-value=1e+02 Score=24.39 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=18.4
Q ss_pred CCceEeCCCCEEEEEEEEecC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts 314 (431)
++++.+.+|+.+.+.|.|...
T Consensus 7 p~~~~~~~G~~vtL~C~~~~~ 27 (122)
T 1xiw_D 7 SGPELVKPGASMKISCKASGY 27 (122)
T ss_dssp CCCEEECTTCCEEEEEEEESS
T ss_pred CCCEEEeCCCcEEEEEEeeCc
Confidence 467899999999999999864
No 78
>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C
Probab=21.79 E-value=90 Score=24.35 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.2
Q ss_pred CCceEeCCCCEEEEEEEEecC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts 314 (431)
++++.+.+|+.+.+.|.|...
T Consensus 7 p~~~~~~~G~~vtL~C~~~~~ 27 (117)
T 2yc1_A 7 SGGGLVQPGGSLRLSCTGSGF 27 (117)
T ss_dssp ECCEEECTTCCEEEEEEEESS
T ss_pred CCCEEEcCCCeEEEEEEecCc
Confidence 457899999999999999854
No 79
>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A
Probab=21.74 E-value=86 Score=24.84 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=17.6
Q ss_pred CceEeCCCCEEEEEEEEecC
Q psy1353 295 HPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 295 ~~v~v~pGD~L~~~C~Ydts 314 (431)
+++.+.+|+.+.+.|.|...
T Consensus 10 ~~~~~~~G~~vtL~C~~~~~ 29 (123)
T 2p45_B 10 GGGLVQAGGSLRLSCAASGY 29 (123)
T ss_dssp CCEEEETTCCEEEEEEEESC
T ss_pred CCEEEeCCCCEEEEEEecCc
Confidence 46899999999999999854
No 80
>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}
Probab=21.72 E-value=59 Score=25.94 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.1
Q ss_pred CCceEeCCCCEEEEEEEEecCCCC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQSRA 317 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~r~ 317 (431)
++++++..|+.+.+.|.|......
T Consensus 7 p~~vtv~~G~~v~L~C~~~~~~~~ 30 (123)
T 4gjt_B 7 SDVVTVVLGQDAKLPCFYRGDSGE 30 (123)
T ss_dssp CSEEECCTTSEEEECCEECCCTTC
T ss_pred CCEEEEEcCCCEEEEEEEeCCccC
Confidence 467899999999999999876543
No 81
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=21.54 E-value=30 Score=27.89 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=17.7
Q ss_pred CceEeCCCCEEEEEEEEecC
Q psy1353 295 HPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 295 ~~v~v~pGD~L~~~C~Ydts 314 (431)
+.+.+.+|+.+.+.|.|...
T Consensus 8 ~~v~~~~G~~vtL~C~~s~~ 27 (117)
T 1xed_A 8 EEVNSVEGNSVSITCYYPPT 27 (117)
T ss_dssp SEEEEETTCCEEEEEECCCC
T ss_pred CeEEEecCCCEEEEeEecCC
Confidence 56889999999999999865
No 82
>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}
Probab=21.50 E-value=63 Score=26.15 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=18.4
Q ss_pred CCceEeCCCCEEEEEEEEecC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts 314 (431)
...+.+.+|+.+.+.|.|...
T Consensus 7 p~~v~v~~G~~vtL~C~~s~~ 27 (126)
T 2h32_A 7 PPAMSSALGTTIRLTCTLRND 27 (126)
T ss_dssp CSEEEEETTCCEEEEEEECTT
T ss_pred CCCEEECCCCCEEEEEEecCC
Confidence 356899999999999999875
No 83
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Probab=21.47 E-value=83 Score=25.42 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=18.7
Q ss_pred CCceEeCCCCEEEEEEEEecCC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~ 315 (431)
+..+.+.+|+.+.+.|.|....
T Consensus 7 p~~v~v~~G~~vtL~C~~s~~~ 28 (121)
T 2i24_N 7 PQRITKETGESLTINCVVRDSR 28 (121)
T ss_dssp CSEEEEETTCCEEEEEEECSCC
T ss_pred CcEEEEecCCcEEEEeEccCCC
Confidence 4568999999999999997653
No 84
>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*
Probab=21.40 E-value=90 Score=24.54 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.2
Q ss_pred CCceEeCCCCEEEEEEEEecC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts 314 (431)
++++.+.+|+.+.+.|.|...
T Consensus 7 p~~~~~~~G~~vtL~C~~~~~ 27 (120)
T 3b9v_A 7 SGGGLVQPGGSLRLSCAASGF 27 (120)
T ss_dssp ECCEEECTTCCEEEEEEEESS
T ss_pred CCCEEEeCCccEEEEEEeeCc
Confidence 457899999999999999854
No 85
>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...
Probab=21.31 E-value=76 Score=24.74 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=19.1
Q ss_pred CCceEeCCCCEEEEEEEEecCC
Q psy1353 294 KHPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~ 315 (431)
++.+.+..|+.+.+.|.|....
T Consensus 8 p~~v~v~~G~~v~L~C~~~~~~ 29 (114)
T 1eeq_A 8 PDSLAVSLGERATINCKSSQSV 29 (114)
T ss_dssp CSEEEECTTSCEEEEEEESSCC
T ss_pred CCeEEEcCCCeEEEEEEcCCCc
Confidence 4678999999999999998764
No 86
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A
Probab=21.26 E-value=58 Score=29.37 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=22.6
Q ss_pred eEEecCCceEeCCCCEEEEEEEEecCCCC
Q psy1353 289 EIRLLKHPVTVLPGDALITTCVYNTQSRA 317 (431)
Q Consensus 289 ~~~~l~~~v~v~pGD~L~~~C~Ydts~r~ 317 (431)
++.+-+..+.+.+|+.+.+.|.|......
T Consensus 2 ~VtQ~p~~v~v~~G~svtL~C~~s~~~~~ 30 (200)
T 3rgv_A 2 SVTQMQGQVTLSENDFLFINCTYSTTGYP 30 (200)
T ss_dssp EEECCCSEEEEETTCCEEECCEEECSSCC
T ss_pred ccEECCCEEEEeCCCCEEEEEEecCCCCc
Confidence 34445567899999999999999986443
No 87
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*
Probab=21.22 E-value=80 Score=28.13 Aligned_cols=32 Identities=16% Similarity=0.353 Sum_probs=23.9
Q ss_pred EEecCCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 290 IRLLKHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 290 ~~~l~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
+.+-+..+.+.+|+.+.+.|.|.......+.|
T Consensus 6 v~Q~p~~~~v~~G~svtL~C~~s~~~~~~v~W 37 (210)
T 2eys_A 6 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRW 37 (210)
T ss_dssp EEEECSEEEEETTCCEEEEEEECCSSCCEEEE
T ss_pred EEEeCCEEEEecCCCEEEEEEECCCCCCeEEE
Confidence 44445678999999999999998765544444
No 88
>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...
Probab=20.87 E-value=1e+02 Score=24.16 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=17.8
Q ss_pred CceEeCCCCEEEEEEEEecC
Q psy1353 295 HPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 295 ~~v~v~pGD~L~~~C~Ydts 314 (431)
+++.+.+|+.+.+.|.|...
T Consensus 8 ~~~~~~~G~~vtL~C~~~~~ 27 (116)
T 1a2y_B 8 GPGLVAPSQSLSITCTVSGF 27 (116)
T ss_dssp CCSEECTTSCEEEEEEEESS
T ss_pred CCEEEeCCCcEEEEEEEcCC
Confidence 56899999999999999865
No 89
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=20.71 E-value=91 Score=26.44 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=23.5
Q ss_pred CCceEeCCCCEEEEEEEEecCCCCceeE
Q psy1353 294 KHPVTVLPGDALITTCVYNTQSRANITL 321 (431)
Q Consensus 294 ~~~v~v~pGD~L~~~C~Ydts~r~~vt~ 321 (431)
++++.+..|+.+.++|.+.......++|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W 34 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTSRMHW 34 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEE
T ss_pred CCcEEEcCCCCEEEEeeCCCccCCCEEE
Confidence 5678999999999999998776566666
No 90
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 4e41_D 4e42_A 3rug_E* 3axl_A
Probab=20.66 E-value=59 Score=29.42 Aligned_cols=27 Identities=11% Similarity=0.306 Sum_probs=22.9
Q ss_pred ceEEecCCceEeCCCCEEEEEEEEecC
Q psy1353 288 QEIRLLKHPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 288 Q~~~~l~~~v~v~pGD~L~~~C~Ydts 314 (431)
|++.+-+..+.+.+|+.+.+.|.|...
T Consensus 4 ~~V~Q~p~~v~v~~G~svtL~C~~s~~ 30 (205)
T 3qjh_A 4 DQVEQSPSALSLHEGTGSALRCNFTTT 30 (205)
T ss_dssp CCBEEECSEEEEETTCCEEEEEECSSC
T ss_pred ceEEEeCCEEEEeCCCCEEEEEEEECC
Confidence 556666677999999999999999887
No 91
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*
Probab=20.53 E-value=98 Score=25.34 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=21.5
Q ss_pred ceEEecCCceEeCCCCEEEEEEEEecC
Q psy1353 288 QEIRLLKHPVTVLPGDALITTCVYNTQ 314 (431)
Q Consensus 288 Q~~~~l~~~v~v~pGD~L~~~C~Ydts 314 (431)
|.+..-+..+.+..|+.+.++|.+...
T Consensus 18 ~~v~q~p~~~~v~~G~~v~L~C~~~~~ 44 (133)
T 3khq_A 18 SQIWQHPRFAAKKRSSMVKFHCYTNHS 44 (133)
T ss_dssp CSEEEECSEEEECTTCCEEEEEEESSS
T ss_pred CceEEcCceEEEeCCCeEEEEEEeCCC
Confidence 344445667899999999999999875
No 92
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*
Probab=20.48 E-value=67 Score=24.18 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=27.2
Q ss_pred CceEeCCCCEEEEEEEEecCCCC---ceeEeCCCCchhhccceeEee
Q psy1353 295 HPVTVLPGDALITTCVYNTQSRA---NITLGGFAITDEMCVNYIHYY 338 (431)
Q Consensus 295 ~~v~v~pGD~L~~~C~Ydts~r~---~vt~gG~~t~DEMC~~fl~YY 338 (431)
+++.+..|+.+.+.|.|...... .+.|-=.......|...+.|+
T Consensus 2 ~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~ 48 (109)
T 2oyp_A 2 DGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRT 48 (109)
T ss_dssp EEEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEE
T ss_pred CCEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEc
Confidence 46889999999999999876332 244432121222455555554
No 93
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Probab=20.21 E-value=54 Score=29.85 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=23.0
Q ss_pred ceEEecCCceEeCCCCEEEEEEEEecCC
Q psy1353 288 QEIRLLKHPVTVLPGDALITTCVYNTQS 315 (431)
Q Consensus 288 Q~~~~l~~~v~v~pGD~L~~~C~Ydts~ 315 (431)
|++.+-+..+.+.+|+.+.+.|.|....
T Consensus 3 ~~V~Q~p~~v~v~~G~sVtL~C~~s~~~ 30 (208)
T 4ei6_A 3 QKVQQSPESLSVPEGGMASLNCTSSDRN 30 (208)
T ss_dssp CCEEEECSEEEEETTCCEECEEEECCTT
T ss_pred ceEEEeCCEEEEECCCCEEEEEEEcCCC
Confidence 4555556778999999999999998764
No 94
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}
Probab=20.17 E-value=54 Score=26.76 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=24.7
Q ss_pred cCCceEeCCCCEEEEEEEEecCCCCceeEe
Q psy1353 293 LKHPVTVLPGDALITTCVYNTQSRANITLG 322 (431)
Q Consensus 293 l~~~v~v~pGD~L~~~C~Ydts~r~~vt~g 322 (431)
-.+.+++..|+.+.++|.+.......++|-
T Consensus 44 ~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~ 73 (145)
T 1z9m_A 44 WTSDETVVAGGTVVLKCQVKDHEDSSLQWS 73 (145)
T ss_dssp BCCCEEEETTSCEEEEEECSCCTTCCEEEE
T ss_pred CCceEEEEcCCCEEEEEEEcCCCCcEEEEE
Confidence 356789999999999999998776667764
No 95
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4
Probab=20.08 E-value=86 Score=26.64 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.4
Q ss_pred eEeCCCCEEEEEEEE-ecCCCCceeE
Q psy1353 297 VTVLPGDALITTCVY-NTQSRANITL 321 (431)
Q Consensus 297 v~v~pGD~L~~~C~Y-dts~r~~vt~ 321 (431)
.++..||.+.++|.+ ....|.+|||
T Consensus 24 ~tv~~G~~~~LeCpv~yc~~rPnVtW 49 (122)
T 1xau_A 24 HSAWTGELFKIECPVKYCVHRPNVTW 49 (122)
T ss_dssp EEECTTSCEEEEEEEECSSSCCCEEE
T ss_pred EEEecCCeEEEEeEecCCCCCCcEEE
Confidence 579999999999999 5567888886
Done!