RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1353
(431 letters)
>d1sdwa2 b.121.1.2 (A:199-356) Peptidylglycine alpha-hydroxylating
monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 158
Score = 150 bits (380), Expect = 2e-44
Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 13/158 (8%)
Query: 203 YDAGIMELGLEYTDKMAVPPRTNYFTLSGYCTSECTTVGLPSKGIKVFGSQLHTHLTGKR 262
AG+ L + +PP C + + VF ++HTH GK
Sbjct: 2 LIAGMY---LMMSVDTVIPPGEKVVNADISCQYKMY-------PMHVFAYRVHTHHLGKV 51
Query: 263 VYTRHIRNGRELAELNRDNHYSPHFQEIRLLKHPVTVLPGDALITTCVYNTQSRANITLG 322
V +RNG+ ++ Q ++HPV V GD L CV+ + R T
Sbjct: 52 VSGYRVRNGQWTLIGRQNPQL---PQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHI 108
Query: 323 GFAITDEMCVNYIHYYPLVDLEVCKSSVSSDNLRTFFN 360
G +DEMC YI YY + + + + F
Sbjct: 109 GGTSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFR 146
>d1sdwa1 b.121.1.2 (A:45-198) Peptidylglycine alpha-hydroxylating
monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 154
Score = 95.1 bits (236), Expect = 5e-24
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 12/118 (10%)
Query: 82 DENRHNSIQFESAIQPSSEGIVHHMELFHCIAPPQQDIPLYEGPCSSPEKPPIVESCKSV 141
DE I F+ +S VHHM LF C P + + ++
Sbjct: 45 DEEAF-VIDFKP---RASMDTVHHMLLFGCNMPSSTGSYWFCDEGTCT-------DKANI 93
Query: 142 LAAWAMGALPFRYPKEAGRPIGGPASNSYVMLEVHYNN-PEHIAGIIDSSGLRLQISK 198
L AWA A P R PK G +GG + Y +L+VHY + D SG+ + +++
Sbjct: 94 LYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTR 151
>d1fsua_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 492
Score = 29.7 bits (65), Expect = 0.70
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 20/125 (16%)
Query: 44 WIKFEVHLTPALNKGDWFAIGFSNYGEFSFADYCLVLCDENRHNSIQFESAIQPSSEGIV 103
+ F + A+ G+W + + F Q+ + PSS+
Sbjct: 381 YSAFNTSVHAAIRHGNWKLLTGYPGCGYWFPPPS------------QYNVSEIPSSDPPT 428
Query: 104 HHMELFHCIAPPQQDIPLYEGPCSSPEKPPIVESCKSVLAAWAMGALPFRYPKEAGRPIG 163
+ LF P++ L S E P IV S L + ++P +P A P
Sbjct: 429 KTLWLFDIDRDPEERHDL------SREYPHIVTKLLSRLQFYHKHSVPVYFP--AQDPRC 480
Query: 164 GPASN 168
P +
Sbjct: 481 DPKAT 485
>d1qhba_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase) {Red algae
(Corallina officinalis) [TaxId: 35170]}
Length = 595
Score = 29.2 bits (65), Expect = 1.1
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 265 TRHIRNGRELAEL-NRDNHYSPHFQE-IRLLKHPVTVLPGDALITTCVYNTQSRANITLG 322
R IR R+LA + D+ Y + + LL + V P + Q + G
Sbjct: 316 ARLIRTIRDLATWVHFDSLYEAYLNACLILLANGVPFDPNLPFQQEDKLDNQD-VFVNFG 374
Query: 323 GFAITDEMC 331
+ +
Sbjct: 375 SAHVLSLVT 383
>d1pvc1_ b.121.4.1 (1:) Poliovirus coat proteins {Poliovirus type 3,
strain Sabin [TaxId: 12086]}
Length = 279
Score = 26.7 bits (59), Expect = 5.0
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 295 HPVTVLPGDALITTCVYNTQSRANITLGGFAITDEMCVNYIHYY 338
+ P D + T V +SR+ T+ F CV I
Sbjct: 28 ATNPLAPSDTVQTRHVVQRRSRSESTIESF-FARGACVAIIEVD 70
>d1qi9a_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase)
{Ascophyllum nodosum [TaxId: 52969]}
Length = 555
Score = 26.8 bits (59), Expect = 6.5
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 4/69 (5%)
Query: 266 RHIRNGRELAE-LNRDNHYSPHFQE-IRLLKHPVTVLPGDALITTCVYNTQSRANITLGG 323
R +RN R+LA DN + ++ + LL G + G
Sbjct: 262 RFVRNARDLARVTFTDNINTEAYRGALILLGLDAFNRAGVNGPFIDIDRQAGFV--NFGI 319
Query: 324 FAITDEMCV 332
+
Sbjct: 320 SHYFRLIGA 328
>d1fpn1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A
2 (HRV-2) [TaxId: 12130]}
Length = 269
Score = 26.3 bits (58), Expect = 7.0
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 295 HPVTVLPGDALITTCVYNTQSRANITLGGFAITDEMCVNYIHY 337
H +V P D + T V +Q+R ++L F + C++
Sbjct: 27 HTSSVQPEDVIETRYVQTSQTRDEMSLESF-LGRSGCIHESKL 68
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA
polymerases {Archaeon Thermococcus gorgonarius [TaxId:
71997]}
Length = 347
Score = 26.3 bits (57), Expect = 7.9
Identities = 14/112 (12%), Positives = 34/112 (30%), Gaps = 9/112 (8%)
Query: 291 RLLKHPVTVLPGDALITTCVYNTQSRANITLGGFAITDEMCV----NYIHYYPLVDLEVC 346
R K V + G + R + + G D V + Y L +
Sbjct: 222 RSEKLGVKFILGREGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEA 281
Query: 347 -----KSSVSSDNLRTFFNYMHDILLALRNNILNVSLLFYIFDKIIHSRSQI 393
K V ++ + + + R ++ + + + + + +Q+
Sbjct: 282 IFGQPKEKVYAEEIAQAWETGEGLERVARYSMEDAKVTYELGKEFFPMEAQL 333
>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 415
Score = 26.2 bits (57), Expect = 8.9
Identities = 10/58 (17%), Positives = 16/58 (27%)
Query: 95 IQPSSEGIVHHMELFHCIAPPQQDIPLYEGPCSSPEKPPIVESCKSVLAAWAMGALPF 152
I + + + P L GP S V K+++ G F
Sbjct: 285 IADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEF 342
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.429
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,684,666
Number of extensions: 81044
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 14
Length of query: 431
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 343
Effective length of database: 1,199,356
Effective search space: 411379108
Effective search space used: 411379108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)