BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13533
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2
PE=2 SV=1
Length = 224
Score = 233 bits (595), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 123/188 (65%), Positives = 145/188 (77%), Gaps = 13/188 (6%)
Query: 22 ENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGSPPNSNNLLNL 81
E G M+ D EL A+KARV+EMEEEAEK+KQ+QSEVDKQM+ GS + L
Sbjct: 34 EEGSMQID-------PELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATV-PL 85
Query: 82 SIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFA 141
S+EEK+E D RS+YVGNVDYGA+AEELE+HFHGCG++NRVTILCNK DGHPKGFAYIEF
Sbjct: 86 SLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFG 145
Query: 142 DKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN---RGGPRGRGRGRVSRGAAMYG 198
K+ V+TA+AM+E+LFRGRQIKV KRTNRPG+STTN RG RGRG RVSR A +
Sbjct: 146 SKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRG-ARVSR-ACCHS 203
Query: 199 GYRPVRRA 206
+R RRA
Sbjct: 204 TFRGARRA 211
>sp|Q28ZX3|PABP2_DROPS Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura
pseudoobscura GN=Pabp2 PE=3 SV=1
Length = 225
Score = 229 bits (584), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/172 (68%), Positives = 139/172 (80%), Gaps = 6/172 (3%)
Query: 38 ELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGSPPNSNNLLNLSIEEKKEADLRSIYVG 97
EL A+KARV+EMEEEAEK+KQ+QSEVDKQM+ GS + LS+EEK+E D RS+YVG
Sbjct: 43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLA-AVPLSLEEKQEIDTRSVYVG 101
Query: 98 NVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLF 157
NVDYGA+AEELE+HFHGCG++NRVTILCNK DGHPKGFAYIEF K+ V+TA+AM+E+LF
Sbjct: 102 NVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLF 161
Query: 158 RGRQIKVNPKRTNRPGISTTN---RGGPRGRGRGRVSRGAAMYGGYRPVRRA 206
RGRQIKV KRTNRPG+STTN RG RGRG R SR A + +R RRA
Sbjct: 162 RGRQIKVMSKRTNRPGLSTTNRFARGSFRGRG-ARASR-ACCHSTFRGARRA 211
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 226 bits (577), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 119/159 (74%), Positives = 139/159 (87%)
Query: 33 CTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGSPPNSNNLLNLSIEEKKEADLR 92
++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM+M PP + + +SIEEK EAD R
Sbjct: 113 AIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADAR 172
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAM 152
SIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+KF GHPKGFAYIEF+DK+SV+T++A+
Sbjct: 173 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLAL 232
Query: 153 DESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVS 191
DESLFRGRQIKV PKRTNRPGISTT+RG PR R R R +
Sbjct: 233 DESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTT 271
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 226 bits (577), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 122/170 (71%), Positives = 144/170 (84%), Gaps = 1/170 (0%)
Query: 23 NGDMEADQSK-CTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGSPPNSNNLLNL 81
+G +E D ++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM+M PP + + +
Sbjct: 102 SGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIM 161
Query: 82 SIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFA 141
SIEEK EAD RSIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+KF GHPKGFAYIEF+
Sbjct: 162 SIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFS 221
Query: 142 DKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVS 191
DK+SV+T++A+DESLFRGRQIKV PKRTNRPGISTT+RG PR R R R +
Sbjct: 222 DKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTT 271
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 226 bits (577), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 122/169 (72%), Positives = 144/169 (85%), Gaps = 1/169 (0%)
Query: 24 GDMEADQSK-CTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGSPPNSNNLLNLS 82
G +EAD ++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM+M PP + + +S
Sbjct: 99 GLVEADPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMS 158
Query: 83 IEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAD 142
+EEK EAD RSIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+KF GHPKGFAYIEF+D
Sbjct: 159 LEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSD 218
Query: 143 KDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVS 191
K+SV+T++A+DESLFRGRQIKV PKRTNRPGISTT+RG PR R R R +
Sbjct: 219 KESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTT 267
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 219 bits (559), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 114/151 (75%), Positives = 135/151 (89%)
Query: 32 KCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGSPPNSNNLLNLSIEEKKEADL 91
+ ++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM+M PP + + +S+EEK EAD
Sbjct: 102 QTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADA 161
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
RSIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+KF GHPKGFAYIEF+DK+SV+T++A
Sbjct: 162 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLA 221
Query: 152 MDESLFRGRQIKVNPKRTNRPGISTTNRGGP 182
+DESLFRGRQIKV PKRTNRPGISTT+RG P
Sbjct: 222 LDESLFRGRQIKVVPKRTNRPGISTTDRGFP 252
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/185 (66%), Positives = 144/185 (77%), Gaps = 21/185 (11%)
Query: 32 KCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGSPPNSNNLLNLSIEEKKEADL 91
+ ++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM+M PP + + +SIEEK EAD
Sbjct: 103 QTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADA 162
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
RSIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+K+ GHPKGFAYIEF+DK+SV+T++A
Sbjct: 163 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLA 222
Query: 152 MDESLFRGRQIKVNPKRTNRPGISTTNRGGPRG---------------------RGRGRV 190
+DESLFRGRQIKV PKRTNRPGISTT+RG PR R RGRV
Sbjct: 223 LDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSGYTPRPRGRV 282
Query: 191 SRGAA 195
RG A
Sbjct: 283 YRGRA 287
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 218 bits (556), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/151 (75%), Positives = 134/151 (88%)
Query: 32 KCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGSPPNSNNLLNLSIEEKKEADL 91
+ ++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM+M PP + + +S+EEK EAD
Sbjct: 103 QTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADA 162
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
RSIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+KF GHPKGFAYIEF DK+SV+T++A
Sbjct: 163 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLA 222
Query: 152 MDESLFRGRQIKVNPKRTNRPGISTTNRGGP 182
+DESLFRGRQIKV PKRTNRPGISTT+RG P
Sbjct: 223 LDESLFRGRQIKVVPKRTNRPGISTTDRGFP 253
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/184 (51%), Positives = 125/184 (67%), Gaps = 23/184 (12%)
Query: 9 IHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMS 68
+ EE + GD E ++ D+ EL A++ RVREMEEEAE+LK L + DK +
Sbjct: 5 VSEEPGLDKGDRAEECEL--------DDPELKAIRMRVREMEEEAERLKGLSGQ-DKSIG 55
Query: 69 MGSPPNSNNLLN--------------LSIEEKKEADLRSIYVGNVDYGATAEELESHFHG 114
+ + P + LS EEKKE D RS+YVGNVDYG+TA++LE+HF
Sbjct: 56 VSTRPCMQTTHSKMTAGAYTEGPPQPLSAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSS 115
Query: 115 CGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGI 174
CGS+NR+TILC+KF GHPKG+AYIEFA+++SV A+AMDE++FRGR IKV PKRTN PGI
Sbjct: 116 CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGI 175
Query: 175 STTN 178
S+T+
Sbjct: 176 SSTD 179
>sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis
GN=Pabpn1l-a PE=1 SV=1
Length = 218
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/185 (51%), Positives = 125/185 (67%), Gaps = 25/185 (13%)
Query: 9 IHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMS 68
+ EE + GD E ++ D+ EL A++ RVREMEEEAE+LK L + DK +
Sbjct: 5 VSEEPGLDKGDGAEECEL--------DDPELKAIRMRVREMEEEAERLKGLSGQ-DKSIG 55
Query: 69 MGSPPNSNNLLN---------------LSIEEKKEADLRSIYVGNVDYGATAEELESHFH 113
+ SP L++ LS EEKKE D RS+YVGNVDYG TA++LE+HF
Sbjct: 56 V-SPRPCMKLIHSKMTAGEYTEGPPRPLSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFS 114
Query: 114 GCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPG 173
CGS+NR+TILC+KF GHPKG+AYIEFA+++SV A+ MDE++FRGR IKV PKRTN PG
Sbjct: 115 SCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPG 174
Query: 174 ISTTN 178
IS+T+
Sbjct: 175 ISSTD 179
>sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2 OS=Homo sapiens
GN=PABPN1L PE=2 SV=1
Length = 278
Score = 167 bits (423), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 114/166 (68%), Gaps = 10/166 (6%)
Query: 38 ELAAMKARVREMEEEAEKLK----QLQSEVDKQMSMG---SPPNSNNLLNLSIEEKKEAD 90
EL A+K +V ME+ + Q Q+E ++ + G SP L+ + EEK EAD
Sbjct: 86 ELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEAD 145
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
RS+YVGNVDYG +AEELE+HF CG V+RVTILC+KF GHPKG+AYIEFA K SVQ A+
Sbjct: 146 HRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAV 205
Query: 151 AMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVSRGAAM 196
+D+SLFRGR IKV PKRTN PGIS+T+RGG RG SRGA
Sbjct: 206 ELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPG---SRGAPF 248
>sp|B0BNE4|EPAB2_RAT Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus
GN=Pabpn1l PE=2 SV=1
Length = 269
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 102/162 (62%), Gaps = 9/162 (5%)
Query: 38 ELAAMKARVREMEEEAEKLKQLQSEVDKQMSMG--------SPPNSNNLLNLSIEEKKEA 89
EL A++ ++ ME AE L + S K SP + +E EA
Sbjct: 78 ELEAIRLKLWTMEH-AEVLPEPPSVQRKATEEERAEARELLSPETIGCFFPGAPKENVEA 136
Query: 90 DLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTA 149
D RS+YVGNVDYG +A ELE++F CG ++RVTILC+KF GHPKG+AYIEFA K SVQ A
Sbjct: 137 DHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAA 196
Query: 150 MAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVS 191
+ +DES FRGR IKV PKRTN PGIS+T+RGG R R +
Sbjct: 197 VRLDESTFRGRVIKVLPKRTNFPGISSTDRGGLRTHSSSRAA 238
>sp|Q5XFR0|EPAB2_MOUSE Embryonic polyadenylate-binding protein 2 OS=Mus musculus
GN=Pabpn1l PE=2 SV=1
Length = 273
Score = 150 bits (379), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 78/153 (50%), Positives = 104/153 (67%), Gaps = 7/153 (4%)
Query: 38 ELAAMKARVREMEE-EAE------KLKQLQSEVDKQMSMGSPPNSNNLLNLSIEEKKEAD 90
EL A+K ++ ME EA+ + K + E + + SP + + + +E EAD
Sbjct: 82 ELEAIKLKLWAMEHAEAQPEPPCVQRKATEEERAEVRQLLSPETVDCFFSRTSKENVEAD 141
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
RS++VGNVDYG +A ELE++F CG ++RVTILC+KF GHPKG+AYIEFA SV+ A+
Sbjct: 142 HRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAV 201
Query: 151 AMDESLFRGRQIKVNPKRTNRPGISTTNRGGPR 183
+DES FRGR IKV PKRTN PGIS+T+RGG R
Sbjct: 202 GLDESTFRGRVIKVLPKRTNFPGISSTDRGGLR 234
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 94/142 (66%), Gaps = 12/142 (8%)
Query: 34 TDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGSPPNSNNLLNLSIEEKKEADLRS 93
T E EL MK RV EME EA KL+ +Q ++D + + L N +K+ D +S
Sbjct: 9 TQEKELLEMKERVAEMEAEAAKLRAMQEQLDNE--------TEALRN----DKESIDAQS 56
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMD 153
+YVGNVDY T EEL+SHF CGSVNRVTILC+KF GHPKGFAYIEF++ V A+ ++
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLN 116
Query: 154 ESLFRGRQIKVNPKRTNRPGIS 175
S+ R +KV PKRTN PG+S
Sbjct: 117 GSMLHERPLKVTPKRTNVPGMS 138
>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum
GN=pabpn1 PE=3 SV=1
Length = 222
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 97/145 (66%), Gaps = 10/145 (6%)
Query: 35 DEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGSPPNSNN-------LLNLSIEEKK 87
++ EL MK R REMEEEA+KL +LQ+ ++ ++ + L+N +++
Sbjct: 40 EDPELEEMKKRFREMEEEAKKLTELQNNLESNITGNNGVGIGGNIGGGGGLMNT---DQE 96
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
E D RS+YVGNVDY +T +++ ++F CG+VNR+TIL +K GHPKG Y+EF +K+S+
Sbjct: 97 EIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESII 156
Query: 148 TAMAMDESLFRGRQIKVNPKRTNRP 172
AMA+++S F RQ+K+ PKRTN P
Sbjct: 157 NAMALNDSFFNERQLKITPKRTNLP 181
>sp|Q09295|YQO4_CAEEL Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans
GN=EEED8.4 PE=4 SV=2
Length = 191
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 84/139 (60%), Gaps = 10/139 (7%)
Query: 48 EMEEEAEKLKQLQSEVDKQMSMGS--PPNSNNLLNLSIEEKKEADLRSIYVGNVDYGATA 105
E+E E+ L+Q+Q+++ K + + PP EE+K D +S+++GNVD+ +T
Sbjct: 17 EIEAESAILQQIQNKMAKHLESAAYVPPTE--------EEQKAIDAKSVFIGNVDFNSTI 68
Query: 106 EELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVN 165
EE+E HF GCG + + TI +KF K FAYIEF D S++ A+ M+ SLFR R I V
Sbjct: 69 EEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVT 128
Query: 166 PKRTNRPGISTTNRGGPRG 184
KRTN PG+ RG RG
Sbjct: 129 AKRTNIPGMGHGVRGSSRG 147
>sp|Q09301|YQOC_CAEEL Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans
GN=EEED8.12 PE=4 SV=1
Length = 197
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 84/139 (60%), Gaps = 10/139 (7%)
Query: 48 EMEEEAEKLKQLQSEVDKQMSMGS--PPNSNNLLNLSIEEKKEADLRSIYVGNVDYGATA 105
E+E E+ L+Q+Q+++ K + + PP EE+K D +S+++GNVD+ +T
Sbjct: 23 EIEAESAILEQIQNKMAKNLESAAYVPPTE--------EEQKAIDAKSVFIGNVDFNSTI 74
Query: 106 EELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVN 165
EE+E HF GCG + R TI +KF K FAYIEF D S++ A+ M+ SLFR R I V
Sbjct: 75 EEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVT 134
Query: 166 PKRTNRPGISTTNRGGPRG 184
KRTN PG+ RG RG
Sbjct: 135 AKRTNIPGMGHGVRGSSRG 153
>sp|P40561|SGN1_YEAST RNA-binding protein SGN1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGN1 PE=1 SV=1
Length = 250
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 4/99 (4%)
Query: 81 LSIEEKK----EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFA 136
LS EEK EAD RSI+VGN+ T E++E HF CG + R+T+L ++ G PKG+
Sbjct: 49 LSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYG 108
Query: 137 YIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGIS 175
YIEF + A+ ++ +G++I V+ KRTN PG +
Sbjct: 109 YIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFN 147
>sp|P42696|RBM34_HUMAN RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2
Length = 430
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 90 DLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTA 149
D RS++VGN+ Y +E HF CGS+ V I+ +K G KGF Y+ F + DSV A
Sbjct: 285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLA 344
Query: 150 MAMDESLFRGRQIKV 164
+ ++ S GR+++V
Sbjct: 345 LKLNNSELMGRKLRV 359
>sp|Q5M9F1|RBM34_RAT RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1
Length = 428
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 90 DLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTA 149
D RS++VGN+ Y LE HF CGS+ V I+ N G +GF Y+ F + D+V A
Sbjct: 283 DKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 342
Query: 150 MAMDESLFRGRQIKV 164
+ ++ S GR+++V
Sbjct: 343 LKLNNSELMGRKLRV 357
>sp|Q8C5L7|RBM34_MOUSE RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1
Length = 375
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 90 DLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTA 149
D RS++VGN+ Y LE HF CGS+ V I+ N G +GF Y+ F + D+V A
Sbjct: 289 DKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 348
Query: 150 MAMDESLFRGRQIKV 164
+ ++ S GR+++V
Sbjct: 349 LKLNNSELMGRKLRV 363
>sp|Q75BJ7|NOP12_ASHGO Nucleolar protein 12 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=NOP12 PE=3 SV=1
Length = 426
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
RS++VGN+D+ + E L HF CG + V I+ + KGFAY++FAD SV A+
Sbjct: 259 RSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADLVSVNKALL 318
Query: 152 MDE---SLFRGRQIKVN 165
+++ ++ +GR+++V
Sbjct: 319 LNDKKMAVGKGRKLRVT 335
>sp|Q08208|NOP12_YEAST Nucleolar protein 12 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP12 PE=1 SV=1
Length = 459
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
RSI+VGN+D+ E L HF CG + V I+ + KGFAY++F D SV A+
Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338
Query: 152 MDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVSRGAAMYGG 199
++E P ++ + T + + R + RVSR M G
Sbjct: 339 LNE----------KPMKSQKQEDENTKKPTKKAR-KLRVSRCKNMKKG 375
>sp|O13741|NOP12_SCHPO Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nop12 PE=1 SV=1
Length = 438
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
R ++VGN+ + A E L +F CGS++ V I+ + KGFAYI+F D V A+
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 152 MDE-SLFRGRQIKVNPKRTNRP-GISTTNRGGPRGR---GRGRVSRGAA 195
++E + GR +++ ++ +P I+ + RG + R GR R G A
Sbjct: 330 LNEKKMPEGRTLRIMRAKSTKPKSITRSKRGDEKTRTLQGRARKLIGKA 378
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
LRS++VGN+ Y AT E+L+ F GSV ++ ++ G PKG+ + E+ D+++ +AM
Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
Query: 151 A-MDESLFRGRQIKVN 165
++ F GR ++V+
Sbjct: 75 RNLNGREFSGRALRVD 90
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAM 152
+++VGN+ + AT ++L + F GCG + + + + G KGF Y+ F+D DS + + M
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM 426
Query: 153 DESLFRGRQIKVN 165
+ GR +++
Sbjct: 427 NGHFIAGRPCRLD 439
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
LRS++VGN+ Y AT E+L+ F GSV ++ ++ G PKG+ + E+ D+++ +AM
Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
Query: 151 A-MDESLFRGRQIKVN 165
++ F GR ++V+
Sbjct: 75 RNLNGREFSGRALRVD 90
>sp|Q6FUS6|NOP12_CANGA Nucleolar protein 12 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NOP12 PE=3
SV=1
Length = 396
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
RS++VGN+D+ E L HF CGS+ V I+ + KGFAY++F + SV A+
Sbjct: 228 RSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKALL 287
Query: 152 MDE 154
++E
Sbjct: 288 LNE 290
>sp|Q6CKV6|NOP12_KLULA Nucleolar protein 12 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=NOP12 PE=3 SV=2
Length = 462
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
RS++VGN+D+ E L HF CG + V I+ + KGFAY++F D SV A+
Sbjct: 297 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKALL 356
Query: 152 MDE 154
+ E
Sbjct: 357 LHE 359
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++ +AM
Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
Query: 151 A-MDESLFRGRQIKVN 165
++ F GR ++V+
Sbjct: 75 RNLNGREFSGRALRVD 90
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++ +AM
Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
Query: 151 A-MDESLFRGRQIKVN 165
++ F GR ++V+
Sbjct: 75 RNLNGREFSGRALRVD 90
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++ +AM
Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
Query: 151 A-MDESLFRGRQIKVN 165
++ F GR ++V+
Sbjct: 75 RNLNGREFSGRALRVD 90
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++ +AM
Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
Query: 151 A-MDESLFRGRQIKVN 165
++ F GR ++V+
Sbjct: 75 RNLNGREFSGRALRVD 90
>sp|Q09100|RNP24_SCHPO RNA-binding protein rnp24 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rnp24 PE=4 SV=2
Length = 369
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 70 GSPPNSNNLLN--LSIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNK 127
G P N L+ SI+ K+ ++VGN+D+ T +L+ HF G + RV ++ +
Sbjct: 204 GRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFE 263
Query: 128 FDGHPKGFAYIEFADKDSVQTAMAMDESLFR 158
G KGF +++F D D+ AM + + +R
Sbjct: 264 DTGKCKGFGFVDFPDIDTCMKAMELGHNSWR 294
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 25/102 (24%)
Query: 94 IYVGNVDYGATAEELESHFHGCGS------------------VNRVTILCNK---FDGHP 132
I+VGN+ + T E L F S + R+ + +K F
Sbjct: 107 IWVGNLSFHTTKEILTDFFVRETSEMIKEVSEENIKPITTEQITRIHMPMSKEKRFQN-- 164
Query: 133 KGFAYIEFADKDSVQTAMAMDESLFRGRQ--IKVNPKRTNRP 172
KGFAY++FA +D+++ A+ E GR IK N + RP
Sbjct: 165 KGFAYVDFATEDALKLALQCSEKALNGRNILIKSNTDFSGRP 206
>sp|P0CR16|MRD1_CRYNJ Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=MRD1 PE=3 SV=1
Length = 769
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 80 NLSIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIE 139
LS +E+ ++V N+ + T+E L SHF G ++ + ++ G P G A+++
Sbjct: 209 QLSADEQLILSTSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQ 268
Query: 140 FAD-KDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRG---------GPRGRGRGR 189
F + +D++ A+D+++F+GR + V P R +PG G G R GRG
Sbjct: 269 FHNAEDALAAYKALDKTIFQGRLLHVLPGRA-KPGQEGAAAGSGVVDGKVLGKRDEGRGE 327
Query: 190 V 190
V
Sbjct: 328 V 328
>sp|P0CR17|MRD1_CRYNB Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=MRD1 PE=3 SV=1
Length = 769
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 80 NLSIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIE 139
LS +E+ ++V N+ + T+E L SHF G ++ + ++ G P G A+++
Sbjct: 209 QLSADEQLILSTSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQ 268
Query: 140 FAD-KDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRG---------GPRGRGRGR 189
F + +D++ A+D+++F+GR + V P R +PG G G R GRG
Sbjct: 269 FHNAEDALAAYKALDKTIFQGRLLHVLPGRA-KPGQEGAAAGSGVVDGKVLGKRDEGRGE 327
Query: 190 V 190
V
Sbjct: 328 V 328
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+ S+ V N+ Y + + L F G V V I +++ +GFA++ F DK + AM
Sbjct: 13 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72
Query: 151 -AMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRG 188
AMD ++ GR+++V R RP S +R GP R G
Sbjct: 73 DAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYG 111
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 7/157 (4%)
Query: 14 NFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGSPP 73
N EN D E+G+ A +D L + R++E E E + +++ EV++ +
Sbjct: 232 NEENKDKNESGENLAANENISDLEWLKSRSTRIKENGEVPEIVPEVK-EVNEVTEVTQ-- 288
Query: 74 NSNNLLNLSIEEKKEADLRS---IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDG 130
S+N L+ EE+ + +++ N+ Y A+ E+ S F G++ V I + G
Sbjct: 289 QSDNEPELTPEEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTG 348
Query: 131 HPKGFAYIEFADK-DSVQTAMAMDESLFRGRQIKVNP 166
KGF Y++F K D+ + ++D+ +F+GR + + P
Sbjct: 349 KSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHILP 385
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 98 NVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESL- 156
N+ + AT ++L F G + V + KFD +GFA++EF +TAM+ E +
Sbjct: 723 NLPFEATRKDLLELFGAFGQLKSVRV-PKKFDQSARGFAFVEFNLMKEAETAMSQLEGVH 781
Query: 157 FRGRQIKV-----NPK----------RTNRPGISTTNRGGPRGRGRGRV 190
GR++ + +P+ + + ++T N R G+G++
Sbjct: 782 LLGRRLVMQYAEQDPENAEVEIERMTKKVKKQVATQNLAAARLAGKGKI 830
Score = 33.5 bits (75), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 79 LNLSIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKG-FAY 137
++L+ +KKE D + I V N +G T +E+ F G + R+ + P G A
Sbjct: 480 VDLTSFDKKERDDKIILVKNFPFGTTIDEIGELFSAYGQLKRMLM-------PPAGTIAI 532
Query: 138 IEFADKDSVQTAMA 151
IEF D S + A +
Sbjct: 533 IEFRDAPSARAAFS 546
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAD- 142
E+K A + +IYV NV+ T EEL HF CG++ ++C++ G KGF ++ F+
Sbjct: 296 EQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTP 354
Query: 143 KDSVQTAMAMDESLFRGR--QIKVNPKRTNRPGISTTNRGGPRGRGRGRVSRGAAMYGGY 200
++++ +F G+ + + K+ +R + + G R R S + G Y
Sbjct: 355 EEAIDAVKTFHGQMFHGKPLYVAIAQKKEDR-KMQLQVQFGNRVEARKSSSSASVNPGTY 413
Query: 201 RPV 203
P+
Sbjct: 414 APL 416
>sp|Q9Y7Y3|YGR4_SCHPO Uncharacterized RNA-binding protein C365.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC365.04c PE=4 SV=1
Length = 233
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 57 KQLQSEVDK-QMSMGSPPNSNNLLNLSIEEKKEADLRSI-YVGNVDYGATAEELESHFHG 114
KQL DK + S+ +PP+ L ++ K D + I +VGN+ ++ E L+ HF
Sbjct: 57 KQLAQSNDKDKHSVSNPPHKT--LKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKR 114
Query: 115 CGSVNRVTILCNKFDGHPKGFAYIEFAD--KDSVQTAMAMDESLFRGRQIKV 164
G V V I +K G KG+A++EF + D + A+ ++++ R+I +
Sbjct: 115 AGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALKFHHTIYKERKINI 166
>sp|Q44556|RBPD_NOSS1 Putative RNA-binding protein RbpD OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpD PE=3 SV=3
Length = 94
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA- 151
+IYVGN+ Y AT +L++ F G V RV + ++ G +GFA++E + A+
Sbjct: 2 TIYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAITE 61
Query: 152 MDESLFRGRQIKVN---PKRTNRPG 173
+D + + GRQ++VN P+ +R G
Sbjct: 62 LDGAEWMGRQLRVNKAKPREDDRRG 86
>sp|Q44554|RBPB_NOSS1 Putative RNA-binding protein RbpB OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpB PE=3 SV=3
Length = 103
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEF-ADKDSVQTAMA 151
SIYVGN+ Y T E L + F GSV RV + ++ G +GF ++E +D + A
Sbjct: 2 SIYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEA 61
Query: 152 MDESLFRGRQIKVNPKR 168
+D + + GR +KVN +
Sbjct: 62 LDGAEWMGRDLKVNKAK 78
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-A 151
SIYVGN+ Y T ++L F GSV RV + ++ G +GF ++E + A+ A
Sbjct: 2 SIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQA 61
Query: 152 MDESLFRGRQIKVNPKR 168
+D + + GR +KVN R
Sbjct: 62 LDGAEWMGRVLKVNKAR 78
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 92 RSIYVGNVD-YGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
R++YVGN++ TA++L F G V V + + + P FA++EFAD++SV A+
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGD--ETQPTRFAFVEFADQNSVPRAL 123
Query: 151 AMDESLFRGRQIKVN 165
A + +F R +K+N
Sbjct: 124 AFNGVMFGDRPLKIN 138
>sp|Q9WX39|RBPF_NOSS1 Putative RNA-binding protein RbpF OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpF PE=3 SV=3
Length = 105
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEF-ADKDSVQTAMA 151
SIYVGN+ Y T E++ + F GSV RV + ++ G +GFA++E +D +
Sbjct: 2 SIYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIEG 61
Query: 152 MDESLFRGRQIKVN 165
+D + + GR +KVN
Sbjct: 62 LDGAEWMGRDLKVN 75
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 69 MGSPPNSNNLLNLSIEEKKEADLRSIYVGNVD-YGATAEELESHFHGCGSVNRVTILCNK 127
+ PP N+ I+E + R++YVGN++ TA++L F G V V + +
Sbjct: 50 IPQPPLMGNVDPSKIDEIR----RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGD- 104
Query: 128 FDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVN 165
+ P FA++EFAD++SV A+A + +F R +K+N
Sbjct: 105 -ETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKIN 141
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 69 MGSPPNSNNLLNLSIEEKKEADLRSIYVGNVD-YGATAEELESHFHGCGSVNRVTILCNK 127
+ PP N+ I+E + R++YVGN++ TA++L F G V V + +
Sbjct: 50 IPQPPLMGNVDPSKIDEIR----RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGD- 104
Query: 128 FDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVN 165
+ P FA++EFAD++SV A+A + +F R +K+N
Sbjct: 105 -ETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKIN 141
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK-DSVQTAM 150
+ +++ N+ Y ++L+S F G + +V + +K +PKGFAYI+F D D+V+ +
Sbjct: 323 KRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYL 382
Query: 151 AMDESLFRGRQIKVNPKR 168
+D F+GR + V P +
Sbjct: 383 ELDAKPFQGRLLHVLPAK 400
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
I + N+ + AT ++++S G + V + KFD +GFA+ EF AM A+
Sbjct: 723 ILIKNLPFEATKKDVQSLLGAYGQLRSVRV-PKKFDRSARGFAFAEFVTAREAANAMRAL 781
Query: 153 DESLFRGRQI 162
+ GR +
Sbjct: 782 KNTHLLGRHL 791
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHP-----KGFAYI 138
E+ + D +IYV N+++ EE + F I P GF ++
Sbjct: 611 EDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFV 670
Query: 139 EFADKDSVQTAM-AMDESLFRGRQIKV 164
EF DK S AM AM+ + G ++++
Sbjct: 671 EFKDKASAVAAMHAMNGFVLDGHKLEI 697
>sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein RbpA OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rbpA PE=3 SV=3
Length = 101
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEF-ADKDSVQTAMA 151
SIYVGN+ Y + +L + F GSV RV + ++ G +GF ++E AD + A
Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61
Query: 152 MDESLFRGRQIKVN 165
+D + + GR +KVN
Sbjct: 62 LDGAEWMGRDLKVN 75
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 80 NLSIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIE 139
N + E KKE D R+++V N+ Y T EEL+ F + I K DG KG AY+E
Sbjct: 313 NKTAENKKERDSRTLFVKNIPYSTTVEELQEIFENAKDIR---IPTGK-DGSNKGIAYVE 368
Query: 140 FADKDSVQTAMAMDESL-FRGRQIKVNPKRTNRPGISTTNRGGPRG 184
F+++D A+ + GR I V+ T ++ N+ GP G
Sbjct: 369 FSNEDEANKALEEKQGAEIEGRSIFVD--FTGEKSQNSGNKKGPEG 412
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
E D + + V N+ Y AT + L F S+ I N+ G KGFA+IEF+ + +
Sbjct: 411 EGDSKVLVVNNLSYSATEDSLREVFEKATSIR---IPQNQ--GRAKGFAFIEFSSAEDAK 465
Query: 148 TAM-AMDESLFRGRQIKV 164
AM + + + GR I++
Sbjct: 466 DAMDSCNNTEIEGRSIRL 483
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAM 152
SI++GN++ +EL+ S +TI + G+ K F Y++F+ ++ V+ A+ +
Sbjct: 234 SIFIGNLNSTKEFDELKDALREFFSKKNLTIQDIRI-GNSKKFGYVDFSSEEEVEKALKL 292
Query: 153 DESLFRGRQIKV 164
G ++K+
Sbjct: 293 TGKKILGTEVKI 304
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,781,662
Number of Sequences: 539616
Number of extensions: 3382201
Number of successful extensions: 15606
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 403
Number of HSP's that attempted gapping in prelim test: 14483
Number of HSP's gapped (non-prelim): 1364
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)