Your job contains 1 sequence.
>psy13533
MSDQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQ
SEVDKQMSMGSPPNSNNLLNLSIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNR
VTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRG
GPRGRGRGRVSRGAAMYGGYRPVRRAR
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13533
(207 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q7ZXB8 - symbol:pabpn1-b "Polyadenylate-binding... 587 4.6e-57 1
UNIPROTKB|Q9DDY9 - symbol:pabpn1-a "Polyadenylate-binding... 586 5.9e-57 1
UNIPROTKB|Q6NVP7 - symbol:pabpn1 "Polyadenylate-binding p... 585 7.5e-57 1
UNIPROTKB|F1MTN4 - symbol:PABPN1 "Polyadenylate-binding p... 571 2.3e-55 1
UNIPROTKB|Q28165 - symbol:PABPN1 "Polyadenylate-binding p... 571 2.3e-55 1
MGI|MGI:1859158 - symbol:Pabpn1 "poly(A) binding protein,... 570 2.9e-55 1
UNIPROTKB|E2R6I0 - symbol:PABPN1 "Uncharacterized protein... 568 4.8e-55 1
UNIPROTKB|Q86U42 - symbol:PABPN1 "Polyadenylate-binding p... 568 4.8e-55 1
UNIPROTKB|F2Z5L8 - symbol:PABPN1 "Uncharacterized protein... 568 4.8e-55 1
UNIPROTKB|G3V7Z8 - symbol:Pabpn1 "Protein Pabpn1" species... 566 7.8e-55 1
ZFIN|ZDB-GENE-040426-2401 - symbol:pabpn1 "poly(A) bindin... 560 3.4e-54 1
UNIPROTKB|Q28ZX3 - symbol:Pabp2 "Polyadenylate-binding pr... 550 3.8e-53 1
FB|FBgn0005648 - symbol:Pabp2 "Pabp2" species:7227 "Droso... 546 1.0e-52 1
UNIPROTKB|B4DEH8 - symbol:PABPN1 "cDNA FLJ57714, highly s... 519 7.4e-50 1
UNIPROTKB|G3V4T2 - symbol:PABPN1 "Polyadenylate-binding p... 519 7.4e-50 1
WB|WBGene00003904 - symbol:pabp-2 species:6239 "Caenorhab... 462 8.1e-44 1
UNIPROTKB|F1NWW9 - symbol:PABPN1 "Uncharacterized protein... 445 5.2e-42 1
UNIPROTKB|Q6TY21 - symbol:Pabpn1l-b "Embryonic polyadenyl... 434 7.5e-41 1
UNIPROTKB|Q804A5 - symbol:Pabpn1l-a "Embryonic polyadenyl... 426 5.3e-40 1
ZFIN|ZDB-GENE-080709-5 - symbol:pabpn1l "poly(A) binding ... 385 1.2e-35 1
TAIR|locus:2142519 - symbol:AT5G10350 species:3702 "Arabi... 381 3.1e-35 1
UNIPROTKB|A6NDY0 - symbol:PABPN1L "Embryonic polyadenylat... 378 6.5e-35 1
ASPGD|ASPL0000053752 - symbol:AN1340 species:162425 "Emer... 376 1.1e-34 1
UNIPROTKB|G4MUH3 - symbol:MGG_07252 "Polyadenylate-bindin... 372 2.8e-34 1
UNIPROTKB|E1B908 - symbol:E1B908 "Uncharacterized protein... 354 2.3e-32 1
DICTYBASE|DDB_G0277371 - symbol:pabpn1 "polyadenylate-bin... 353 2.9e-32 1
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 350 6.0e-32 1
TAIR|locus:2171780 - symbol:AT5G65260 species:3702 "Arabi... 348 9.8e-32 1
RGD|1562761 - symbol:Pabpn1l "poly(A)binding protein nucl... 346 1.6e-31 1
UNIPROTKB|G3V9K1 - symbol:Pabpn1l "Similar to embryonic p... 346 1.6e-31 1
CGD|CAL0002199 - symbol:orf19.7097 species:5476 "Candida ... 342 4.2e-31 1
UNIPROTKB|I3LCY5 - symbol:LOC100525398 "Uncharacterized p... 342 4.2e-31 1
UNIPROTKB|Q5AFH1 - symbol:SGN12 "Putative uncharacterized... 342 4.2e-31 1
MGI|MGI:2685954 - symbol:Pabpn1l "poly(A)binding protein ... 331 6.2e-30 1
UNIPROTKB|I3LCE0 - symbol:LOC100620185 "Uncharacterized p... 330 7.9e-30 1
CGD|CAL0003946 - symbol:orf19.1389 species:5476 "Candida ... 251 5.6e-25 2
WB|WBGene00017140 - symbol:EEED8.12 species:6239 "Caenorh... 261 1.6e-22 1
WB|WBGene00017135 - symbol:EEED8.4 species:6239 "Caenorha... 260 2.1e-22 1
UNIPROTKB|H0YJH9 - symbol:PABPN1 "Polyadenylate-binding p... 256 5.5e-22 1
WB|WBGene00020354 - symbol:T08B6.5 species:6239 "Caenorha... 250 2.4e-21 1
RGD|619928 - symbol:Pabpn1 "poly(A) binding protein, nucl... 213 2.0e-17 1
SGD|S000001440 - symbol:SGN1 "Cytoplasmic RNA-binding pro... 198 7.7e-16 1
UNIPROTKB|A2A2V2 - symbol:RBM34 "RNA-binding protein 34" ... 157 4.7e-13 2
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 171 5.6e-13 1
UNIPROTKB|P42696 - symbol:RBM34 "RNA-binding protein 34" ... 157 5.8e-13 2
UNIPROTKB|E2R3E1 - symbol:RBM34 "Uncharacterized protein"... 145 4.5e-12 2
UNIPROTKB|F1RGW8 - symbol:RBM34 "Uncharacterized protein"... 147 1.1e-11 2
SGD|S000005401 - symbol:NOP12 "Protein involved in pre-rR... 138 2.0e-11 2
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 156 2.2e-11 1
TAIR|locus:2087685 - symbol:AT3G12640 species:3702 "Arabi... 152 3.1e-11 2
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 130 7.3e-11 2
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 150 9.4e-11 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 150 9.4e-11 1
RGD|1310161 - symbol:Rbm34 "RNA binding motif protein 34"... 151 4.9e-10 1
MGI|MGI:1098653 - symbol:Rbm34 "RNA binding motif protein... 148 8.0e-10 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 141 8.4e-10 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 141 8.4e-10 1
TAIR|locus:2061077 - symbol:AT2G24350 species:3702 "Arabi... 145 3.2e-09 1
ZFIN|ZDB-GENE-040718-77 - symbol:rbm34 "RNA binding motif... 142 4.3e-09 1
CGD|CAL0000019 - symbol:orf19.1646 species:5476 "Candida ... 143 1.0e-08 1
UNIPROTKB|F1NIM5 - symbol:RBM34 "Uncharacterized protein"... 136 1.8e-08 1
UNIPROTKB|Q48A10 - symbol:CPS_0338 "RNA-binding protein" ... 127 2.6e-08 1
TIGR_CMR|CPS_0338 - symbol:CPS_0338 "RNA-binding protein"... 127 2.6e-08 1
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein... 134 3.5e-08 1
UNIPROTKB|J9P8Y3 - symbol:CSTF2T "Uncharacterized protein... 134 5.3e-08 1
UNIPROTKB|F1SD01 - symbol:CSTF2T "Uncharacterized protein... 134 6.0e-08 1
UNIPROTKB|Q9H0L4 - symbol:CSTF2T "Cleavage stimulation fa... 134 6.1e-08 1
RGD|1310026 - symbol:Cstf2t "cleavage stimulation factor,... 134 6.2e-08 1
UNIPROTKB|G3MZ78 - symbol:CSTF2T "Uncharacterized protein... 134 6.3e-08 1
MGI|MGI:1932622 - symbol:Cstf2t "cleavage stimulation fac... 134 6.3e-08 1
ASPGD|ASPL0000073559 - symbol:AN10574 species:162425 "Eme... 136 9.5e-08 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 120 1.4e-07 1
UNIPROTKB|F5GXV8 - symbol:RBM7 "RNA-binding protein 7" sp... 116 3.8e-07 1
UNIPROTKB|F5H606 - symbol:RBM7 "RNA-binding protein 7" sp... 116 3.8e-07 1
UNIPROTKB|I3L521 - symbol:I3L521 "Uncharacterized protein... 116 3.8e-07 1
TAIR|locus:2100696 - symbol:PHIP1 "phragmoplastin interac... 130 4.7e-07 1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl... 115 4.8e-07 1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl... 115 4.8e-07 1
UNIPROTKB|E9PID8 - symbol:CSTF2 "Cleavage stimulation fac... 129 6.2e-07 1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 114 6.4e-07 2
UNIPROTKB|Q5ZLS0 - symbol:CSTF2 "Uncharacterized protein"... 129 7.1e-07 1
UNIPROTKB|J9NX69 - symbol:CSTF2 "Uncharacterized protein"... 129 7.9e-07 1
UNIPROTKB|E1BWJ0 - symbol:SART3 "Uncharacterized protein"... 122 7.9e-07 2
UNIPROTKB|F1S1L9 - symbol:LOC100515986 "Uncharacterized p... 129 8.9e-07 1
UNIPROTKB|K7GQE7 - symbol:LOC100515986 "Uncharacterized p... 129 9.0e-07 1
UNIPROTKB|Q8HXM1 - symbol:CSTF2 "Cleavage stimulation fac... 129 9.4e-07 1
UNIPROTKB|K7GS58 - symbol:LOC100515986 "Uncharacterized p... 129 9.4e-07 1
UNIPROTKB|E2RP40 - symbol:CSTF2 "Uncharacterized protein"... 129 9.5e-07 1
UNIPROTKB|P33240 - symbol:CSTF2 "Cleavage stimulation fac... 129 9.5e-07 1
UNIPROTKB|Q5RDA3 - symbol:CSTF2 "Cleavage stimulation fac... 129 9.5e-07 1
MGI|MGI:1343054 - symbol:Cstf2 "cleavage stimulation fact... 129 9.6e-07 1
UNIPROTKB|E1BVJ6 - symbol:CSTF2 "Uncharacterized protein"... 129 9.9e-07 1
UNIPROTKB|F1MVI1 - symbol:CSTF2 "Cleavage stimulation fac... 129 9.9e-07 1
UNIPROTKB|I3LE23 - symbol:LOC100515986 "Uncharacterized p... 129 9.9e-07 1
UNIPROTKB|E7EWR4 - symbol:CSTF2 "Cleavage stimulation fac... 129 1.0e-06 1
UNIPROTKB|I3L8K8 - symbol:I3L8K8 "Uncharacterized protein... 112 1.0e-06 1
UNIPROTKB|E1C8T0 - symbol:CSTF2 "Uncharacterized protein"... 129 1.0e-06 1
UNIPROTKB|G1K177 - symbol:CSTF2 "Cleavage stimulation fac... 129 1.1e-06 1
ZFIN|ZDB-GENE-031118-2 - symbol:cstf2 "cleavage stimulati... 128 1.1e-06 1
UNIPROTKB|G4MR34 - symbol:MGG_09885 "Cleavage stimulation... 126 1.2e-06 1
WARNING: Descriptions of 210 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|Q7ZXB8 [details] [associations]
symbol:pabpn1-b "Polyadenylate-binding protein 2-B"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
KO:K14396 HSSP:P33240 EMBL:BC045063 RefSeq:NP_001080719.1
UniGene:Xl.21871 ProteinModelPortal:Q7ZXB8 SMR:Q7ZXB8 GeneID:380411
KEGG:xla:380411 CTD:380411 Xenbase:XB-GENE-1007055 Uniprot:Q7ZXB8
Length = 295
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 121/200 (60%), Positives = 143/200 (71%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMG 70
EE E + E G++ DQ+ ++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM+M
Sbjct: 83 EELEDEELEEEEPGELTGDQT--IEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMS 140
Query: 71 XXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDG 130
+EEK EAD RSIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+KF G
Sbjct: 141 PPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTG 200
Query: 131 HPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNXX---XXXXXXX 187
HPKGFAYIEF+DK+SV+T++A+DESLFRGRQIKV PKRTNRPGISTT+
Sbjct: 201 HPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARA 260
Query: 188 XXXXXXAAMYGGYRPVRRAR 207
+ Y GY P R R
Sbjct: 261 SSYSSRSRFYSGYTPRPRGR 280
>UNIPROTKB|Q9DDY9 [details] [associations]
symbol:pabpn1-a "Polyadenylate-binding protein 2-A"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
EMBL:AF257236 EMBL:AY382836 EMBL:BC073657 RefSeq:NP_001082057.1
UniGene:Xl.55103 HSSP:P33240 ProteinModelPortal:Q9DDY9 SMR:Q9DDY9
PRIDE:Q9DDY9 GeneID:398201 KEGG:xla:398201 CTD:398201
Xenbase:XB-GENE-6251817 Uniprot:Q9DDY9
Length = 296
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 121/200 (60%), Positives = 142/200 (71%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMG 70
EE E + E G++ DQ+ ++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM+M
Sbjct: 84 EELEDEELEEEEPGELTGDQT--IEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMS 141
Query: 71 XXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDG 130
+EEK EAD RSIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+KF G
Sbjct: 142 PPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTG 201
Query: 131 HPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNXX---XXXXXXX 187
HPKGFAYIEF DK+SV+T++A+DESLFRGRQIKV PKRTNRPGISTT+
Sbjct: 202 HPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARA 261
Query: 188 XXXXXXAAMYGGYRPVRRAR 207
+ Y GY P R R
Sbjct: 262 SSYSSRSRFYSGYTPRPRGR 281
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 121/200 (60%), Positives = 143/200 (71%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMG 70
EE E + E G++ DQ+ ++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM+M
Sbjct: 84 EELEDEELEEEEPGELTGDQT--IEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMS 141
Query: 71 XXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDG 130
IEEK EAD RSIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+K+ G
Sbjct: 142 PPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTG 201
Query: 131 HPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNXX---XXXXXXX 187
HPKGFAYIEF+DK+SV+T++A+DESLFRGRQIKV PKRTNRPGISTT+
Sbjct: 202 HPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARA 261
Query: 188 XXXXXXAAMYGGYRPVRRAR 207
+ Y GY P R R
Sbjct: 262 SSYSSRSRFYSGYTPRPRGR 281
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 113/158 (71%), Positives = 131/158 (82%)
Query: 22 ENGDMEADQSK-CTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXX 80
E+G +E D ++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM+M
Sbjct: 70 ESGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 129
Query: 81 XXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEF 140
IEEK EAD RSIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+KF GHPKGFAYIEF
Sbjct: 130 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 189
Query: 141 ADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 178
+DK+SV+T++A+DESLFRGRQIKV PKRTNRPGISTT+
Sbjct: 190 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTD 227
>UNIPROTKB|Q28165 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD EMBL:X89969
EMBL:BC133558 IPI:IPI00701904 PIR:S59863 RefSeq:NP_776994.1
UniGene:Bt.5085 ProteinModelPortal:Q28165 SMR:Q28165 STRING:Q28165
PRIDE:Q28165 Ensembl:ENSBTAT00000021887 GeneID:282298
KEGG:bta:282298 CTD:8106 InParanoid:Q28165 OMA:RTTSWYS
NextBio:20806099 ArrayExpress:Q28165 Uniprot:Q28165
Length = 306
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 113/158 (71%), Positives = 131/158 (82%)
Query: 22 ENGDMEADQSK-CTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXX 80
E+G +E D ++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM+M
Sbjct: 101 ESGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 160
Query: 81 XXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEF 140
IEEK EAD RSIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+KF GHPKGFAYIEF
Sbjct: 161 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 220
Query: 141 ADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 178
+DK+SV+T++A+DESLFRGRQIKV PKRTNRPGISTT+
Sbjct: 221 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTD 258
>MGI|MGI:1859158 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:U93050 MGI:MGI:1859158 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 HOVERGEN:HBG107480 GO:GO:0008143 GO:GO:0016973
KO:K14396 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
CTD:8106 EMBL:AK032172 EMBL:BC055866 IPI:IPI00136169
IPI:IPI00410858 RefSeq:NP_062275.1 UniGene:Mm.7723
ProteinModelPortal:Q8CCS6 SMR:Q8CCS6 IntAct:Q8CCS6 STRING:Q8CCS6
PhosphoSite:Q8CCS6 PRIDE:Q8CCS6 Ensembl:ENSMUST00000022808
Ensembl:ENSMUST00000116476 GeneID:54196 KEGG:mmu:54196
UCSC:uc007txg.2 UCSC:uc007txh.2 InParanoid:Q8CCS6 ChiTaRS:PABPN1
NextBio:311042 Bgee:Q8CCS6 CleanEx:MM_PABPN1 Genevestigator:Q8CCS6
GermOnline:ENSMUSG00000022198 Uniprot:Q8CCS6
Length = 302
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 113/158 (71%), Positives = 131/158 (82%)
Query: 22 ENGDMEADQSK-CTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXX 80
E G +EAD ++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM+M
Sbjct: 97 EPGLVEADPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 156
Query: 81 XXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEF 140
+EEK EAD RSIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+KF GHPKGFAYIEF
Sbjct: 157 MSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 216
Query: 141 ADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 178
+DK+SV+T++A+DESLFRGRQIKV PKRTNRPGISTT+
Sbjct: 217 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTD 254
>UNIPROTKB|E2R6I0 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973
GeneTree:ENSGT00390000001517 OMA:RTTSWYS EMBL:AAEX03005608
Ensembl:ENSCAFT00000018216 Uniprot:E2R6I0
Length = 306
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 113/158 (71%), Positives = 130/158 (82%)
Query: 22 ENGDMEADQSK-CTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXX 80
E G +E D ++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM+M
Sbjct: 101 EPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 160
Query: 81 XXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEF 140
IEEK EAD RSIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+KF GHPKGFAYIEF
Sbjct: 161 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 220
Query: 141 ADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 178
+DK+SV+T++A+DESLFRGRQIKV PKRTNRPGISTT+
Sbjct: 221 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTD 258
>UNIPROTKB|Q86U42 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0006936 "muscle
contraction" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0019048 "virus-host
interaction" evidence=TAS] [GO:0019054 "modulation by virus of host
cellular process" evidence=TAS] [GO:0019058 "viral infectious
cycle" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0046778 "modification by virus of host mRNA
processing" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006936 EMBL:CH471078 GO:GO:0030529 GO:GO:0019058
GO:GO:0000398 eggNOG:NOG238057 HPA:HPA000637 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
GO:GO:0046778 GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD CTD:8106 OMA:RTTSWYS EMBL:AF026029 EMBL:BX247976
EMBL:BC010939 IPI:IPI00005792 IPI:IPI00414963 RefSeq:NP_004634.1
UniGene:Hs.707712 PDB:3B4D PDB:3B4M PDB:3UCG PDBsum:3B4D
PDBsum:3B4M PDBsum:3UCG ProteinModelPortal:Q86U42 SMR:Q86U42
IntAct:Q86U42 MINT:MINT-89761 STRING:Q86U42 PhosphoSite:Q86U42
DMDM:46403176 PaxDb:Q86U42 PRIDE:Q86U42 Ensembl:ENST00000216727
Ensembl:ENST00000397276 GeneID:8106 KEGG:hsa:8106 UCSC:uc001wjh.4
UCSC:uc001wjj.3 GeneCards:GC14P023789 HGNC:HGNC:8565 MIM:164300
MIM:602279 neXtProt:NX_Q86U42 Orphanet:270 PharmGKB:PA32891
InParanoid:Q86U42 PhylomeDB:Q86U42 EvolutionaryTrace:Q86U42
GenomeRNAi:8106 NextBio:30755 PMAP-CutDB:Q86U42 ArrayExpress:Q86U42
Bgee:Q86U42 CleanEx:HS_PABPN1 Genevestigator:Q86U42
GermOnline:ENSG00000100836 Uniprot:Q86U42
Length = 306
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 113/158 (71%), Positives = 130/158 (82%)
Query: 22 ENGDMEADQSK-CTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXX 80
E G +E D ++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM+M
Sbjct: 101 EPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 160
Query: 81 XXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEF 140
IEEK EAD RSIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+KF GHPKGFAYIEF
Sbjct: 161 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 220
Query: 141 ADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 178
+DK+SV+T++A+DESLFRGRQIKV PKRTNRPGISTT+
Sbjct: 221 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTD 258
>UNIPROTKB|F2Z5L8 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973 KO:K14396
GeneTree:ENSGT00390000001517 CTD:8106 OMA:RTTSWYS EMBL:CU633625
RefSeq:NP_001230477.1 UniGene:Ssc.16011 ProteinModelPortal:F2Z5L8
SMR:F2Z5L8 PRIDE:F2Z5L8 Ensembl:ENSSSCT00000002263 GeneID:100155260
KEGG:ssc:100155260 Uniprot:F2Z5L8
Length = 306
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 113/158 (71%), Positives = 130/158 (82%)
Query: 22 ENGDMEADQSK-CTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXX 80
E G +E D ++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM+M
Sbjct: 101 EPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 160
Query: 81 XXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEF 140
IEEK EAD RSIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+KF GHPKGFAYIEF
Sbjct: 161 MSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 220
Query: 141 ADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 178
+DK+SV+T++A+DESLFRGRQIKV PKRTNRPGISTT+
Sbjct: 221 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTD 258
>UNIPROTKB|G3V7Z8 [details] [associations]
symbol:Pabpn1 "Protein Pabpn1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474049 KO:K14396 GeneTree:ENSGT00390000001517 CTD:8106
RefSeq:NP_001128480.1 UniGene:Rn.39199 ProteinModelPortal:G3V7Z8
Ensembl:ENSRNOT00000021096 GeneID:116697 KEGG:rno:116697
NextBio:619592 Uniprot:G3V7Z8
Length = 302
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 112/158 (70%), Positives = 130/158 (82%)
Query: 22 ENGDMEADQSK-CTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXX 80
E G +E D ++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM+M
Sbjct: 97 EPGLVETDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVI 156
Query: 81 XXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEF 140
+EEK EAD RSIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+KF GHPKGFAYIEF
Sbjct: 157 MSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEF 216
Query: 141 ADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 178
+DK+SV+T++A+DESLFRGRQIKV PKRTNRPGISTT+
Sbjct: 217 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTD 254
>ZFIN|ZDB-GENE-040426-2401 [details] [associations]
symbol:pabpn1 "poly(A) binding protein, nuclear 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2401 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 KO:K14396
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD
CTD:8106 EMBL:BX294113 EMBL:BC068437 EMBL:BC079522 IPI:IPI00508307
RefSeq:NP_001098602.1 RefSeq:NP_998424.1 UniGene:Dr.76617
SMR:Q6NUT4 STRING:Q6NUT4 Ensembl:ENSDART00000066722 GeneID:406543
KEGG:dre:406543 InParanoid:Q6NUT4 OMA:MNLSPPP NextBio:20818107
Uniprot:Q6NUT4
Length = 284
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 122/191 (63%), Positives = 138/191 (72%)
Query: 24 GDMEA--DQSKCT-DEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXX 80
GD E D+ + ++ EL A+KARVREMEEEAEKLK+LQ+EV+KQM++
Sbjct: 29 GDEEPGLDEGEAAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNLSPPPAGPVIMS 88
Query: 81 XXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEF 140
IEEK EAD RSIYVGNVDYGATAEELE+HFHGCGSVNRVTILC+KF GHPKGFAYIEF
Sbjct: 89 --IEEKIEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEF 146
Query: 141 ADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNXX---XXXXXXXXXXXXXAAMY 197
ADK+SV+TAMA+DESLFRGRQIKV KRTNRPGISTT+ A Y
Sbjct: 147 ADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRARFRSRGGNFSSRARYY 206
Query: 198 GGYRPVR-RAR 207
GY P R R R
Sbjct: 207 SGYTPPRGRGR 217
>UNIPROTKB|Q28ZX3 [details] [associations]
symbol:Pabp2 "Polyadenylate-binding protein 2"
species:46245 "Drosophila pseudoobscura pseudoobscura" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0042802 "identical protein binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0042802 EMBL:CM000071 GenomeReviews:CM000071_GR
eggNOG:NOG238057 GO:GO:0008143 KO:K14396 OMA:GRANYYA
OrthoDB:EOG4V9S6S RefSeq:XP_001360914.1 ProteinModelPortal:Q28ZX3
SMR:Q28ZX3 GeneID:4804339 KEGG:dpo:Dpse_GA15278 FlyBase:FBgn0075302
InParanoid:Q28ZX3 Uniprot:Q28ZX3
Length = 225
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 116/214 (54%), Positives = 148/214 (69%)
Query: 1 MSDQENSFIHEEENFENGDHIENGDMEADQSKCTDEA-------ELAAMKARVREMEEEA 53
M+D++ S ++E++ E+ + NG+ E + T+E EL A+KARV+EMEEEA
Sbjct: 1 MADEDIS-LNEDQLLESMEET-NGEQETEIVTETEEEGSMQIDPELEAIKARVKEMEEEA 58
Query: 54 EKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFH 113
EK+KQ+QSEVDKQM+ G +EEK+E D RS+YVGNVDYGA+AEELE+HFH
Sbjct: 59 EKIKQMQSEVDKQMA-GGSTTGLAAVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFH 117
Query: 114 GCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPG 173
GCG++NRVTILCNK DGHPKGFAYIEF K+ V+TA+AM+E+LFRGRQIKV KRTNRPG
Sbjct: 118 GCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPG 177
Query: 174 ISTTNXXXXXXXXXXXXXXX-AAMYGGYRPVRRA 206
+STTN A + +R RRA
Sbjct: 178 LSTTNRFARGSFRGRGARASRACCHSTFRGARRA 211
>FB|FBgn0005648 [details] [associations]
symbol:Pabp2 "Pabp2" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS;IDA] [GO:0006378
"mRNA polyadenylation" evidence=ISS;IMP;IDA] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:AE013599
GO:GO:0005737 GO:GO:0022008 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:NOG238057 GO:GO:0000289 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 EMBL:L23873 EMBL:L34934 EMBL:AF116341
EMBL:AY070631 EMBL:AY075519 RefSeq:NP_476902.1 RefSeq:NP_724648.1
UniGene:Dm.521 ProteinModelPortal:Q7KNF2 SMR:Q7KNF2 IntAct:Q7KNF2
STRING:Q7KNF2 PaxDb:Q7KNF2 PRIDE:Q7KNF2 EnsemblMetazoa:FBtr0088785
EnsemblMetazoa:FBtr0088786 GeneID:35788 KEGG:dme:Dmel_CG2163
CTD:35788 FlyBase:FBgn0005648 InParanoid:Q7KNF2 OMA:GRANYYA
OrthoDB:EOG4V9S6S PhylomeDB:Q7KNF2 ChiTaRS:PABP2 GenomeRNAi:35788
NextBio:795217 Bgee:Q7KNF2 GermOnline:CG2163 Uniprot:Q7KNF2
Length = 224
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 114/197 (57%), Positives = 137/197 (69%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMG 70
EE N E I ++E + S D EL A+KARV+EMEEEAEK+KQ+QSEVDKQM+ G
Sbjct: 18 EETNGEQETEIAT-EVEEEGSMQIDP-ELEAIKARVKEMEEEAEKIKQMQSEVDKQMA-G 74
Query: 71 XXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDG 130
+EEK+E D RS+YVGNVDYGA+AEELE+HFHGCG++NRVTILCNK DG
Sbjct: 75 GSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADG 134
Query: 131 HPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNXXXXXXXXXXXX 190
HPKGFAYIEF K+ V+TA+AM+E+LFRGRQIKV KRTNRPG+STTN
Sbjct: 135 HPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGA 194
Query: 191 XXX-AAMYGGYRPVRRA 206
A + +R RRA
Sbjct: 195 RVSRACCHSTFRGARRA 211
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 100/130 (76%), Positives = 113/130 (86%)
Query: 49 MEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEEL 108
MEEEAEKLK+LQ+EV+KQM+M IEEK EAD RSIYVGNVDYGATAEEL
Sbjct: 1 MEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEEL 60
Query: 109 ESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKR 168
E+HFHGCGSVNRVTILC+KF GHPKGFAYIEF+DK+SV+T++A+DESLFRGRQIKV PKR
Sbjct: 61 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 120
Query: 169 TNRPGISTTN 178
TNRPGISTT+
Sbjct: 121 TNRPGISTTD 130
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 100/130 (76%), Positives = 113/130 (86%)
Query: 49 MEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEEL 108
MEEEAEKLK+LQ+EV+KQM+M IEEK EAD RSIYVGNVDYGATAEEL
Sbjct: 1 MEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEEL 60
Query: 109 ESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKR 168
E+HFHGCGSVNRVTILC+KF GHPKGFAYIEF+DK+SV+T++A+DESLFRGRQIKV PKR
Sbjct: 61 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 120
Query: 169 TNRPGISTTN 178
TNRPGISTT+
Sbjct: 121 TNRPGISTTD 130
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 89/172 (51%), Positives = 118/172 (68%)
Query: 35 DEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXXXXI-EEKKEADLRS 93
D+A+L+A++ + E+EEE +KLK +Q+E+ M++ EEK EAD +S
Sbjct: 20 DDADLSAIEGDLNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSLLTPEEKAEADAKS 79
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMD 153
+YVGNVDYGATAEE+E HFHGCGSV+RVTI C++F GHPKGFAY+EF +K+ +Q A+AM
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMT 139
Query: 154 ESLFRGRQIKVNPKRTNRPGISTTNXXXXXXXXXXXXXXXAAMY---GGYRP 202
+SL RGRQIKV+PKRTN+PG+STTN Y GG+RP
Sbjct: 140 DSLLRGRQIKVDPKRTNKPGMSTTNRPPFRGRGGRGRGNVIVKYVYAGGFRP 191
>UNIPROTKB|F1NWW9 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 OMA:MAANQEG EMBL:AADN02054103
IPI:IPI00598135 ProteinModelPortal:F1NWW9
Ensembl:ENSGALT00000010095 Uniprot:F1NWW9
Length = 184
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 98/173 (56%), Positives = 115/173 (66%)
Query: 38 ELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVG 97
EL A+KARVREMEEE ++LK+LQ E + + MG E K EAD RSIYVG
Sbjct: 1 ELEAIKARVREMEEEDKRLKELQLEAESCLLMGSEAGLFQRMT---EGKVEADQRSIYVG 57
Query: 98 NVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLF 157
NVDYG TAEELESHF+ CG +NRVTILC+KF GHPKG+AYIEF K SV+ A+ +DES+F
Sbjct: 58 NVDYGGTAEELESHFNICGRINRVTILCDKFSGHPKGYAYIEFEQKSSVKAAVELDESIF 117
Query: 158 RGRQIKVNPKRTNRPGISTTNXXXXXXXXXXXXXXXA--AMYGGYRPVR-RAR 207
RGR IKV PKRTN PGIS+T+ YGG +PVR R R
Sbjct: 118 RGRVIKVLPKRTNMPGISSTDRGGRRGHFQARGGLIPRWGYYGG-QPVRLRGR 169
>UNIPROTKB|Q6TY21 [details] [associations]
symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
Length = 218
Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
Identities = 92/184 (50%), Positives = 120/184 (65%)
Query: 9 IHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMS 68
+ EE + GD E ++ D+ EL A++ RVREMEEEAE+LK L + DK +
Sbjct: 5 VSEEPGLDKGDRAEECEL--------DDPELKAIRMRVREMEEEAERLKGLSGQ-DKSIG 55
Query: 69 MGXXXXXXXXXXX--------------XIEEKKEADLRSIYVGNVDYGATAEELESHFHG 114
+ EEKKE D RS+YVGNVDYG+TA++LE+HF
Sbjct: 56 VSTRPCMQTTHSKMTAGAYTEGPPQPLSAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSS 115
Query: 115 CGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGI 174
CGS+NR+TILC+KF GHPKG+AYIEFA+++SV A+AMDE++FRGR IKV PKRTN PGI
Sbjct: 116 CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGI 175
Query: 175 STTN 178
S+T+
Sbjct: 176 SSTD 179
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 91/184 (49%), Positives = 119/184 (64%)
Query: 9 IHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSE------ 62
+ EE + GD E ++ D+ EL A++ RVREMEEEAE+LK L +
Sbjct: 5 VSEEPGLDKGDGAEECEL--------DDPELKAIRMRVREMEEEAERLKGLSGQDKSIGV 56
Query: 63 --------VDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHG 114
+ +M+ G EEKKE D RS+YVGNVDYG TA++LE+HF
Sbjct: 57 SPRPCMKLIHSKMTAGEYTEGPPRPLSA-EEKKEIDKRSVYVGNVDYGGTAQDLEAHFSS 115
Query: 115 CGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGI 174
CGS+NR+TILC+KF GHPKG+AYIEFA+++SV A+ MDE++FRGR IKV PKRTN PGI
Sbjct: 116 CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGI 175
Query: 175 STTN 178
S+T+
Sbjct: 176 SSTD 179
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 81/141 (57%), Positives = 102/141 (72%)
Query: 38 ELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVG 97
EL A++A V EM+E +Q EV++Q EE+ ++D RSIYVG
Sbjct: 19 ELDAVQACVLEMDES-----DMQYEVERQFPYSPEAELFFDMTH--EERIDSDRRSIYVG 71
Query: 98 NVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLF 157
NVDYGATA+ELE +F+ CG VNRVTI N+F GHPKGFAYIEF+D++SV+TAMA+DE+LF
Sbjct: 72 NVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKGFAYIEFSDRESVRTAMALDETLF 131
Query: 158 RGRQIKVNPKRTNRPGISTTN 178
RGR IKV+PKRTN PG STT+
Sbjct: 132 RGRVIKVSPKRTNIPGFSTTD 152
>TAIR|locus:2142519 [details] [associations]
symbol:AT5G10350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL353995 eggNOG:NOG238057 GO:GO:0008143
KO:K14396 HOGENOM:HOG000208465 ProtClustDB:CLSN2715990
EMBL:BT003893 EMBL:BT005003 IPI:IPI00533153 PIR:T50004
RefSeq:NP_196597.1 UniGene:At.32388 ProteinModelPortal:Q9LX90
SMR:Q9LX90 IntAct:Q9LX90 STRING:Q9LX90 PaxDb:Q9LX90 PRIDE:Q9LX90
EnsemblPlants:AT5G10350.1 GeneID:830899 KEGG:ath:AT5G10350
TAIR:At5g10350 InParanoid:Q9LX90 OMA:MAANQEG PhylomeDB:Q9LX90
ArrayExpress:Q9LX90 Genevestigator:Q9LX90 Uniprot:Q9LX90
Length = 217
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 83/176 (47%), Positives = 117/176 (66%)
Query: 1 MSDQENSFIHEEENFENGDHIENGDMEADQSKCTDEA--ELAAMKARVREMEEEAEKLKQ 58
M ++E+ ++ E E GD + D + D S ++A ELA MK R++EMEEEA L++
Sbjct: 1 MEEEEHE-VYGGEIPEVGD-TDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALRE 58
Query: 59 LQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSV 118
+Q++V+K+M G E K+E D RS+YVGNVDY T EE++ HF CG+V
Sbjct: 59 MQAKVEKEM--GATQDPASMAANQ-EGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTV 115
Query: 119 NRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGI 174
NRVTIL +KF G PKGFAY+EF + ++VQ A+ ++ES GRQ+KV+PKRTN PG+
Sbjct: 116 NRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGM 170
>UNIPROTKB|A6NDY0 [details] [associations]
symbol:PABPN1L "Embryonic polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC092384
eggNOG:COG0724 HOVERGEN:HBG107480 KO:K14396 EMBL:BC130001
EMBL:BC130002 IPI:IPI00375983 IPI:IPI00854628 IPI:IPI00942797
IPI:IPI01021917 RefSeq:NP_001073956.2 UniGene:Hs.730522
ProteinModelPortal:A6NDY0 SMR:A6NDY0 STRING:A6NDY0
PhosphoSite:A6NDY0 PaxDb:A6NDY0 PRIDE:A6NDY0 DNASU:390748
Ensembl:ENST00000378358 Ensembl:ENST00000411789
Ensembl:ENST00000419291 Ensembl:ENST00000547152 GeneID:390748
KEGG:hsa:390748 UCSC:uc002fmi.3 UCSC:uc010vpd.2 UCSC:uc010vpe.2
CTD:390748 GeneCards:GC16M088928 H-InvDB:HIX0059621 HGNC:HGNC:37237
HPA:HPA043415 neXtProt:NX_A6NDY0 HOGENOM:HOG000208465
InParanoid:A6NDY0 OMA:RCGEVHR GenomeRNAi:390748 NextBio:104019
ArrayExpress:A6NDY0 Bgee:A6NDY0 Genevestigator:A6NDY0
Uniprot:A6NDY0
Length = 278
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 88/184 (47%), Positives = 117/184 (63%)
Query: 11 EEENFENGDHIENGD-------MEADQ-SKCT-DEAELAAMKARVREMEEEAEKLK---- 57
E+E E+ + ++GD +E + ++C + EL A+K +V ME+ +
Sbjct: 50 EKEEEEDAEEDQDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGV 109
Query: 58 QLQSEVDKQMSMGXXXXXXXXX---XXXIEEKKEADLRSIYVGNVDYGATAEELESHFHG 114
Q Q+E ++ + G EEK EAD RS+YVGNVDYG +AEELE+HF
Sbjct: 110 QQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSR 169
Query: 115 CGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGI 174
CG V+RVTILC+KF GHPKG+AYIEFA K SVQ A+ +D+SLFRGR IKV PKRTN PGI
Sbjct: 170 CGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGI 229
Query: 175 STTN 178
S+T+
Sbjct: 230 SSTD 233
>ASPGD|ASPL0000053752 [details] [associations]
symbol:AN1340 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 EMBL:AACD01000018
OrthoDB:EOG44N22T RefSeq:XP_658944.1 ProteinModelPortal:Q5BDP0
SMR:Q5BDP0 STRING:Q5BDP0 EnsemblFungi:CADANIAT00001272
GeneID:2877113 KEGG:ani:AN1340.2 OMA:SRACCYG Uniprot:Q5BDP0
Length = 187
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 79/168 (47%), Positives = 106/168 (63%)
Query: 35 DEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSI 94
DE E+ AMK RV EME EA KL+++Q+ +D+Q E+K++ D RSI
Sbjct: 23 DEEEIEAMKRRVAEMESEAAKLREMQATLDQQSE------------SLKEDKEDIDARSI 70
Query: 95 YVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDE 154
+VGNVDYGA+ EE+++HF CGS+NRVTIL +KF G PKG+AY+EFA+ V A+ ++E
Sbjct: 71 FVGNVDYGASPEEIQAHFQSCGSINRVTILLDKFTGQPKGYAYVEFAEPSLVAQALVLNE 130
Query: 155 SLFRGRQIKVNPKRTNRPGISTTNXXXXXXXXXXXXXXXAAMY-GGYR 201
S+FRGR +KV PKRTN PG+S+ Y GGYR
Sbjct: 131 SVFRGRNLKVVPKRTNLPGMSSRGRGRGRGRGYGRGGFPRGGYRGGYR 178
>UNIPROTKB|G4MUH3 [details] [associations]
symbol:MGG_07252 "Polyadenylate-binding protein 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K14396 RefSeq:XP_003715472.1
ProteinModelPortal:G4MUH3 SMR:G4MUH3 EnsemblFungi:MGG_07252T0
GeneID:2682998 KEGG:mgr:MGG_07252 Uniprot:G4MUH3
Length = 193
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 78/165 (47%), Positives = 105/165 (63%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMG 70
+EE H EN D D+ E++AMK RV EMEEEA KL+++Q+ +D Q
Sbjct: 7 KEEPVATEQH-ENDTGAGDDG---DDEEISAMKKRVAEMEEEAAKLREMQASLDSQSQ-- 60
Query: 71 XXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDG 130
E + + D RSI+VGNVDY A+ EE+++HF CGS+NRVTIL +KF G
Sbjct: 61 ---------ELSTESRDDVDSRSIFVGNVDYSASPEEIQAHFQSCGSINRVTILLDKFTG 111
Query: 131 HPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGIS 175
PKGFAY+EF + V A+ ++ES+F+GR IKV+PKRTN PG+S
Sbjct: 112 QPKGFAYVEFTEPSLVAQALVLNESVFKGRNIKVSPKRTNYPGMS 156
>UNIPROTKB|E1B908 [details] [associations]
symbol:E1B908 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:DAAA02046256 IPI:IPI00826522
Ensembl:ENSBTAT00000032540 Uniprot:E1B908
Length = 290
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 73/144 (50%), Positives = 100/144 (69%)
Query: 38 ELAAMKARVREMEE-EAEKLKQLQSEVDKQMSMGXXXXXXXXXXXXIE--EKKEADLRSI 94
EL A+K ++ ME+ + + ++Q+ + + + G EK EAD RSI
Sbjct: 102 ELEAIKLKLWAMEQAQGPEPPRVQNLDEGEEAAGALLARQLLSPETDSPLEKAEADHRSI 161
Query: 95 YVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDE 154
YVGNVDYG TA+ELE++F+ CG ++RVTILC+KF GHPKG+AYIEFA + S Q A+ +D+
Sbjct: 162 YVGNVDYGGTAQELEAYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATESSAQAAVELDK 221
Query: 155 SLFRGRQIKVNPKRTNRPGISTTN 178
S+FRGR IKV PKRTN PGIS+T+
Sbjct: 222 SIFRGRVIKVLPKRTNLPGISSTD 245
>DICTYBASE|DDB_G0277371 [details] [associations]
symbol:pabpn1 "polyadenylate-binding protein 2"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008143 "poly(A)
RNA binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277371 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000019 eggNOG:NOG238057
GO:GO:0008143 KO:K14396 HSSP:P33240 RefSeq:XP_642788.1
ProteinModelPortal:Q54ZS8 SMR:Q54ZS8 STRING:Q54ZS8
EnsemblProtists:DDB0233678 GeneID:8620981 KEGG:ddi:DDB_G0277371
OMA:FETEGQA Uniprot:Q54ZS8
Length = 222
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 72/176 (40%), Positives = 111/176 (63%)
Query: 1 MSDQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQ 60
+ D++N + E+N N HI N + + S ++ EL MK R REMEEEA+KL +LQ
Sbjct: 10 VEDKDNEKLKGEDNINN--HISNHNNTEETS--FEDPELEEMKKRFREMEEEAKKLTELQ 65
Query: 61 SEVDKQMS----MGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCG 116
+ ++ ++ +G +++E D RS+YVGNVDY +T +++ ++F CG
Sbjct: 66 NNLESNITGNNGVGIGGNIGGGGGLMNTDQEEIDSRSVYVGNVDYKSTHDQILAYFQSCG 125
Query: 117 SVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRP 172
+VNR+TIL +K GHPKG Y+EF +K+S+ AMA+++S F RQ+K+ PKRTN P
Sbjct: 126 TVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLP 181
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 74/149 (49%), Positives = 94/149 (63%)
Query: 28 ADQSKC-TDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEK 86
+DQ T E EL MK RV EME EA KL+ +Q ++D + +K
Sbjct: 2 SDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETE------------ALRNDK 49
Query: 87 KEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSV 146
+ D +S+YVGNVDY T EEL+SHF CGSVNRVTILC+KF GHPKGFAYIEF++ V
Sbjct: 50 ESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLV 109
Query: 147 QTAMAMDESLFRGRQIKVNPKRTNRPGIS 175
A+ ++ S+ R +KV PKRTN PG+S
Sbjct: 110 PNALLLNGSMLHERPLKVTPKRTNVPGMS 138
>TAIR|locus:2171780 [details] [associations]
symbol:AT5G65260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB013395 eggNOG:NOG238057
HOGENOM:HOG000208465 HSSP:P33240 OMA:GRANYYA EMBL:AF386984
EMBL:BT000018 IPI:IPI00548869 RefSeq:NP_201329.1 UniGene:At.24028
UniGene:At.9297 ProteinModelPortal:Q9FJN9 SMR:Q9FJN9 IntAct:Q9FJN9
STRING:Q9FJN9 PaxDb:Q9FJN9 PRIDE:Q9FJN9 EnsemblPlants:AT5G65260.1
GeneID:836651 KEGG:ath:AT5G65260 TAIR:At5g65260 InParanoid:Q9FJN9
PhylomeDB:Q9FJN9 ProtClustDB:CLSN2715990 ArrayExpress:Q9FJN9
Genevestigator:Q9FJN9 Uniprot:Q9FJN9
Length = 220
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 79/173 (45%), Positives = 109/173 (63%)
Query: 10 HEEENFENGDHIE-NGDMEA-----DQSKCTDEA--ELAAMKARVREMEEEAEKLKQLQS 61
HE E D E +GDMEA D + D+A EL MK R++EME+EA L+++Q+
Sbjct: 6 HEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQA 65
Query: 62 EVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRV 121
+V+K+M K+E D RS++VGNVDY T EE++ HF CG+V+RV
Sbjct: 66 KVEKEMGAQDPASIAANQAG----KEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRV 121
Query: 122 TILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGI 174
TIL +KF G PKGFAY+EF + ++VQ A+ ++ES GRQ+KV KRTN PG+
Sbjct: 122 TILTDKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGL 173
>RGD|1562761 [details] [associations]
symbol:Pabpn1l "poly(A)binding protein nuclear 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562761 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
HOVERGEN:HBG107480 KO:K14396 CTD:390748 HOGENOM:HOG000208465
OMA:RCGEVHR OrthoDB:EOG4N04GD EMBL:BC158789 IPI:IPI00359848
RefSeq:NP_001107251.1 UniGene:Rn.154587 ProteinModelPortal:B0BNE4
SMR:B0BNE4 PRIDE:B0BNE4 GeneID:307920 KEGG:rno:307920
UCSC:RGD:1562761 NextBio:658097 Genevestigator:B0BNE4
Uniprot:B0BNE4
Length = 269
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 65/95 (68%), Positives = 78/95 (82%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK 143
+E EAD RS+YVGNVDYG +A ELE++F CG ++RVTILC+KF GHPKG+AYIEFA K
Sbjct: 131 KENVEADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASK 190
Query: 144 DSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 178
SVQ A+ +DES FRGR IKV PKRTN PGIS+T+
Sbjct: 191 SSVQAAVRLDESTFRGRVIKVLPKRTNFPGISSTD 225
>UNIPROTKB|G3V9K1 [details] [associations]
symbol:Pabpn1l "Similar to embryonic pol(YA) binding
protein 2 (Predicted)" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562761 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473972 GeneTree:ENSGT00390000001517 UniGene:Rn.154587
Ensembl:ENSRNOT00000045052 Uniprot:G3V9K1
Length = 284
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 65/95 (68%), Positives = 78/95 (82%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK 143
+E EAD RS+YVGNVDYG +A ELE++F CG ++RVTILC+KF GHPKG+AYIEFA K
Sbjct: 146 KENVEADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASK 205
Query: 144 DSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 178
SVQ A+ +DES FRGR IKV PKRTN PGIS+T+
Sbjct: 206 SSVQAAVRLDESTFRGRVIKVLPKRTNFPGISSTD 240
>CGD|CAL0002199 [details] [associations]
symbol:orf19.7097 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199 GO:GO:0000166
GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000024
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 RefSeq:XP_720388.1
RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1 SMR:Q5AFH1
STRING:Q5AFH1 GeneID:3637979 GeneID:3703864 KEGG:cal:CaO19.7097
KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 71/135 (52%), Positives = 92/135 (68%)
Query: 42 MKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDY 101
+K ++ EME+E KL++L S++ + + G EEK++ D RSIY+GNVDY
Sbjct: 20 VKNKLEEMEQETAKLRELHSQLSSESTNGVTHPTD-------EEKRDTDARSIYIGNVDY 72
Query: 102 GATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA-MDESLFRGR 160
G+T EL+ HF G VNRVTIL NKF G PKGFAY+EFAD D+V A+A +D S FR R
Sbjct: 73 GSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFRER 132
Query: 161 QIKVNPKRTNRPGIS 175
Q+KV+ KRTN PGIS
Sbjct: 133 QLKVSAKRTNIPGIS 147
>UNIPROTKB|I3LCY5 [details] [associations]
symbol:LOC100525398 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:FP102571
Ensembl:ENSSSCT00000023360 Uniprot:I3LCY5
Length = 295
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 74/150 (49%), Positives = 92/150 (61%)
Query: 33 CTDEAELAAMKARVREMEEEAEKLKQLQSEVDK-QMSMGXXXXXXXXXXXXIE---EKKE 88
C E E +K E + E Q Q E D + G + EK E
Sbjct: 99 CWQELEAIRLKLWAMEQAQGPEPQPQQQEEEDAGALLAGQLLSPEKEAGFPSDTPTEKVE 158
Query: 89 ADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQT 148
AD RS+YVGNVDY TA ELE++F+ CG ++RVTILC+KF GHPKG+AYIEFA + S Q
Sbjct: 159 ADHRSVYVGNVDYEGTARELEAYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATESSAQA 218
Query: 149 AMAMDESLFRGRQIKVNPKRTNRPGISTTN 178
A+ +D S+FRGR IKV PKRTN PGIS+T+
Sbjct: 219 AVELDNSVFRGRVIKVLPKRTNFPGISSTD 248
>UNIPROTKB|Q5AFH1 [details] [associations]
symbol:SGN12 "Putative uncharacterized protein SGN12"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199
GO:GO:0000166 GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465
RefSeq:XP_720388.1 RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1
SMR:Q5AFH1 STRING:Q5AFH1 GeneID:3637979 GeneID:3703864
KEGG:cal:CaO19.7097 KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 71/135 (52%), Positives = 92/135 (68%)
Query: 42 MKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDY 101
+K ++ EME+E KL++L S++ + + G EEK++ D RSIY+GNVDY
Sbjct: 20 VKNKLEEMEQETAKLRELHSQLSSESTNGVTHPTD-------EEKRDTDARSIYIGNVDY 72
Query: 102 GATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA-MDESLFRGR 160
G+T EL+ HF G VNRVTIL NKF G PKGFAY+EFAD D+V A+A +D S FR R
Sbjct: 73 GSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFRER 132
Query: 161 QIKVNPKRTNRPGIS 175
Q+KV+ KRTN PGIS
Sbjct: 133 QLKVSAKRTNIPGIS 147
>MGI|MGI:2685954 [details] [associations]
symbol:Pabpn1l "poly(A)binding protein nuclear 1-like"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISA] [GO:0008143 "poly(A) RNA binding" evidence=ISA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2685954 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 CTD:390748 OMA:RCGEVHR
EMBL:BC141316 EMBL:BC141317 EMBL:BG080308 EMBL:BG067238
EMBL:CA556976 EMBL:BM225984 EMBL:C85607 EMBL:C85611 EMBL:C86787
EMBL:BK001615 IPI:IPI00381169 RefSeq:NP_001007463.1
UniGene:Mm.25449 ProteinModelPortal:Q5XFR0 SMR:Q5XFR0
PhosphoSite:Q5XFR0 PRIDE:Q5XFR0 Ensembl:ENSMUST00000093059
GeneID:382035 KEGG:mmu:382035 UCSC:uc009ntk.1 eggNOG:NOG288813
GeneTree:ENSGT00390000001517 InParanoid:Q5XFR0 OrthoDB:EOG4N04GD
NextBio:402874 Bgee:Q5XFR0 CleanEx:MM_PABPNL1 Genevestigator:Q5XFR0
GermOnline:ENSMUSG00000069867 Uniprot:Q5XFR0
Length = 273
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 62/95 (65%), Positives = 77/95 (81%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK 143
+E EAD RS++VGNVDYG +A ELE++F CG ++RVTILC+KF GHPKG+AYIEFA
Sbjct: 135 KENVEADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASH 194
Query: 144 DSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 178
SV+ A+ +DES FRGR IKV PKRTN PGIS+T+
Sbjct: 195 RSVKAAVGLDESTFRGRVIKVLPKRTNFPGISSTD 229
>UNIPROTKB|I3LCE0 [details] [associations]
symbol:LOC100620185 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:FP102819
Ensembl:ENSSSCT00000030389 OMA:CCGEINR Uniprot:I3LCE0
Length = 295
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 72/150 (48%), Positives = 90/150 (60%)
Query: 33 CTDEAELAAMKARVREMEEEAEKLKQLQSEVDK-QMSMGXXXXXXXXXXXXIE---EKKE 88
C E E +K E + E Q Q E D + G + EK E
Sbjct: 99 CWQELEAIRLKLWAMEQAQGPEPQPQQQEEEDAGALLAGQLLSPEKEAGFPSDTPTEKVE 158
Query: 89 ADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQT 148
AD RS+YVGNVDY TA ELE++F+ CG ++RVTILC+KF GHPKG+AYIEFA + S Q
Sbjct: 159 ADHRSVYVGNVDYEGTARELEAYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATESSAQA 218
Query: 149 AMAMDESLFRGRQIKVNPKRTNRPGISTTN 178
+ +D S+FRG IKV PKRTN PGIS+T+
Sbjct: 219 PVELDNSVFRGPVIKVLPKRTNFPGISSTD 248
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 251 (93.4 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 49/92 (53%), Positives = 66/92 (71%)
Query: 83 IEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAD 142
+ +++E D RS+YVGNVDY +T E+LE FHG G + RVTIL ++F G PKG+AYIEF
Sbjct: 19 LAKQEEIDGRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQ 78
Query: 143 KDSVQTAM-AMDESLFRGRQIKVNPKRTNRPG 173
+SVQ A+ + FRGR+++V KRTN PG
Sbjct: 79 TESVQKAIDELHGKEFRGRELRVTAKRTNLPG 110
Score = 48 (22.0 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 43 KARVREMEEEAEKLKQLQSEVD 64
K RV+E EEE ++ Q E+D
Sbjct: 5 KVRVQETEEERQERLAKQEEID 26
>WB|WBGene00017140 [details] [associations]
symbol:EEED8.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
EMBL:FO081042 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
PIR:T15923 RefSeq:NP_495021.1 ProteinModelPortal:Q09301 SMR:Q09301
IntAct:Q09301 STRING:Q09301 EnsemblMetazoa:EEED8.12 GeneID:173922
KEGG:cel:CELE_EEED8.12 UCSC:EEED8.12 CTD:173922 WormBase:EEED8.12
InParanoid:Q09301 OMA:HESIFRD NextBio:881677 Uniprot:Q09301
Length = 197
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 57/129 (44%), Positives = 78/129 (60%)
Query: 48 EMEEEAEK--LKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATA 105
EME EAE L+Q+Q+++ K + EE+K D +S+++GNVD+ +T
Sbjct: 21 EMEIEAESAILEQIQNKMAKNLESAAYVPPTE------EEQKAIDAKSVFIGNVDFNSTI 74
Query: 106 EELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVN 165
EE+E HF GCG + R TI +KF K FAYIEF D S++ A+ M+ SLFR R I V
Sbjct: 75 EEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVT 134
Query: 166 PKRTNRPGI 174
KRTN PG+
Sbjct: 135 AKRTNIPGM 143
>WB|WBGene00017135 [details] [associations]
symbol:EEED8.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
EMBL:FO081042 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
PIR:T15924 RefSeq:NP_495022.2 ProteinModelPortal:Q09295 SMR:Q09295
STRING:Q09295 EnsemblMetazoa:EEED8.4 GeneID:173921
KEGG:cel:CELE_EEED8.4 UCSC:EEED8.4 CTD:173921 WormBase:EEED8.4
InParanoid:Q09295 OMA:KSERASP NextBio:881673 Uniprot:Q09295
Length = 191
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 56/129 (43%), Positives = 78/129 (60%)
Query: 48 EMEEEAEK--LKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATA 105
EME EAE L+Q+Q+++ K + EE+K D +S+++GNVD+ +T
Sbjct: 15 EMEIEAESAILQQIQNKMAKHLESAAYVPPTE------EEQKAIDAKSVFIGNVDFNSTI 68
Query: 106 EELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVN 165
EE+E HF GCG + + TI +KF K FAYIEF D S++ A+ M+ SLFR R I V
Sbjct: 69 EEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVT 128
Query: 166 PKRTNRPGI 174
KRTN PG+
Sbjct: 129 AKRTNIPGM 137
>UNIPROTKB|H0YJH9 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HGNC:HGNC:8565 Ensembl:ENST00000555295 Uniprot:H0YJH9
Length = 96
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 47/57 (82%), Positives = 55/57 (96%)
Query: 122 TILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 178
TILC+KF GHPKGFAYIEF+DK+SV+T++A+DESLFRGRQIKV PKRTNRPGISTT+
Sbjct: 2 TILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTD 58
>WB|WBGene00020354 [details] [associations]
symbol:T08B6.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG238057
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 EMBL:FO081718
PIR:T15076 RefSeq:NP_500666.2 ProteinModelPortal:O44530 SMR:O44530
STRING:O44530 EnsemblMetazoa:T08B6.5 GeneID:177260
KEGG:cel:CELE_T08B6.5 UCSC:T08B6.5 CTD:177260 WormBase:T08B6.5
InParanoid:O44530 OMA:ELETHFK NextBio:896018 Uniprot:O44530
Length = 177
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 47/94 (50%), Positives = 66/94 (70%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK 143
EE+++ D RS+YVGNVD+ +T E+E HF CG V RVTI +KF G+ K FA++EF
Sbjct: 38 EEQEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKL 97
Query: 144 DSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTT 177
+SVQ A+ + ++FR R+I V KRTN+PG+ T
Sbjct: 98 ESVQLALVLSGTMFRNRKIMVTLKRTNKPGMGRT 131
>RGD|619928 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0016973 "poly(A)+ mRNA
export from nucleus" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
RGD:619928 GO:GO:0005634 eggNOG:NOG238057 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD UniGene:Rn.39199 EMBL:U94858 IPI:IPI00195515
STRING:O08729 UCSC:RGD:619928 InParanoid:O08729
Genevestigator:O08729 Uniprot:O08729
Length = 85
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 48/84 (57%), Positives = 56/84 (66%)
Query: 22 ENGDMEADQSK-CTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXX 80
E G +E D ++ EL A+KARVREMEEEA+KLK+LQ+EV KQM M
Sbjct: 2 EPGLVETDPGDGAIEDPELEAIKARVREMEEEADKLKELQNEVXKQMXMSPPPGNAGPVI 61
Query: 81 XXIEEKKEADLRSIYVGNVDYGAT 104
+EEK EAD RSIYVGNVDYGAT
Sbjct: 62 MSLEEKMEADARSIYVGNVDYGAT 85
>SGD|S000001440 [details] [associations]
symbol:SGN1 "Cytoplasmic RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0016071 "mRNA metabolic process" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001440 GO:GO:0005737 GO:GO:0016071
GO:GO:0000166 EMBL:BK006942 Gene3D:3.30.70.330 EMBL:X79743
EMBL:Z38062 eggNOG:COG0724 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 OrthoDB:EOG44N22T PIR:S48435
RefSeq:NP_012266.1 ProteinModelPortal:P40561 SMR:P40561
DIP:DIP-6566N IntAct:P40561 MINT:MINT-388965 STRING:P40561
PaxDb:P40561 PeptideAtlas:P40561 EnsemblFungi:YIR001C GeneID:854817
KEGG:sce:YIR001C CYGD:YIR001c OMA:TASPPEN NextBio:977657
Genevestigator:P40561 GermOnline:YIR001C Uniprot:P40561
Length = 250
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 37/88 (42%), Positives = 56/88 (63%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
EAD RSI+VGN+ T E++E HF CG + R+T+L ++ G PKG+ YIEF +
Sbjct: 60 EADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYRE 119
Query: 148 TAMAMDESLFRGRQIKVNPKRTNRPGIS 175
A+ ++ +G++I V+ KRTN PG +
Sbjct: 120 KALQLNGGELKGKKIAVSRKRTNIPGFN 147
>UNIPROTKB|A2A2V2 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL133418 EMBL:AL732292 UniGene:Hs.535224
HGNC:HGNC:28965 HOGENOM:HOG000060230 HOVERGEN:HBG052167
IPI:IPI00930315 SMR:A2A2V2 STRING:A2A2V2 Ensembl:ENST00000447801
Uniprot:A2A2V2
Length = 408
Score = 157 (60.3 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 85 EKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKD 144
E D RS++VGN+ Y +E HF CGS+ V I+ +K G KGF Y+ F + D
Sbjct: 258 ETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTD 317
Query: 145 SVQTAMAMDESLFRGRQIKV 164
SV A+ ++ S GR+++V
Sbjct: 318 SVHLALKLNNSELMGRKLRV 337
Score = 42 (19.8 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 2 SDQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVR-EMEEEAEKLK 57
+D E IH+++ + + + G AD+ K D+ E + R + ++ +E E+LK
Sbjct: 127 ADLEEE-IHQKQG-QKRKNSQPGVKVADR-KILDDTEDTVVSQRKKIQINQEEERLK 180
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 33/74 (44%), Positives = 49/74 (66%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA- 151
S+YVGN + T EEL + F G +N V I+C++ G P+GFA+IEFA++ S Q A+
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 152 MDESLFRGRQIKVN 165
M+ + F GR ++VN
Sbjct: 66 MNGAEFNGRPLRVN 79
>UNIPROTKB|P42696 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL133418 eggNOG:COG0724 EMBL:D38491 EMBL:AK292362
EMBL:AL732292 EMBL:BC029451 IPI:IPI00181617 IPI:IPI00930357
RefSeq:NP_001155005.1 RefSeq:NP_055829.2 UniGene:Hs.535224
ProteinModelPortal:P42696 SMR:P42696 IntAct:P42696 STRING:P42696
PhosphoSite:P42696 DMDM:57013870 SWISS-2DPAGE:P42696 PaxDb:P42696
PRIDE:P42696 DNASU:23029 Ensembl:ENST00000366606
Ensembl:ENST00000408888 GeneID:23029 KEGG:hsa:23029 UCSC:uc001hwn.3
UCSC:uc010pxp.1 CTD:23029 GeneCards:GC01M235294 HGNC:HGNC:28965
HPA:HPA028606 neXtProt:NX_P42696 PharmGKB:PA142671094
HOGENOM:HOG000060230 HOVERGEN:HBG052167 InParanoid:P42696
OMA:AEGHSKS OrthoDB:EOG46DM2Z PhylomeDB:P42696 GenomeRNAi:23029
NextBio:44002 ArrayExpress:P42696 Bgee:P42696 CleanEx:HS_RBM34
Genevestigator:P42696 GermOnline:ENSG00000188739 Uniprot:P42696
Length = 430
Score = 157 (60.3 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 85 EKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKD 144
E D RS++VGN+ Y +E HF CGS+ V I+ +K G KGF Y+ F + D
Sbjct: 280 ETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTD 339
Query: 145 SVQTAMAMDESLFRGRQIKV 164
SV A+ ++ S GR+++V
Sbjct: 340 SVHLALKLNNSELMGRKLRV 359
Score = 42 (19.8 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 2 SDQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVR-EMEEEAEKLK 57
+D E IH+++ + + + G AD+ K D+ E + R + ++ +E E+LK
Sbjct: 129 ADLEEE-IHQKQG-QKRKNSQPGVKVADR-KILDDTEDTVVSQRKKIQINQEEERLK 182
>UNIPROTKB|E2R3E1 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 OMA:AEGHSKS EMBL:AAEX03002684
Ensembl:ENSCAFT00000018260 Uniprot:E2R3E1
Length = 429
Score = 145 (56.1 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 85 EKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKD 144
E D RS++VGN+ Y +E HF CGS+ V I+ ++ G +GF Y+ F + D
Sbjct: 280 ETSSRDKRSVFVGNLPYKVEESAVEEHFLDCGSIVAVRIVRDRVTGVGRGFGYVLFENTD 339
Query: 145 SVQTAMAMDESLFRGRQIKV 164
+V A+ ++ S GR+++V
Sbjct: 340 AVHLALKLNNSELMGRKLRV 359
Score = 46 (21.3 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 9 IHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLK 57
IH+++ + ++ ++G AD+ K D + + + E+ +E EKLK
Sbjct: 136 IHQKQE-QKRNNFQSGINVADK-KVLDVDHIVLNQRKKIEINQEEEKLK 182
>UNIPROTKB|F1RGW8 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 OMA:AEGHSKS EMBL:CU407042
RefSeq:XP_001925470.1 UniGene:Ssc.36566 ProteinModelPortal:F1RGW8
Ensembl:ENSSSCT00000011121 GeneID:100154004 KEGG:ssc:100154004
Uniprot:F1RGW8
Length = 424
Score = 147 (56.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 85 EKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKD 144
E D RS++VGN+ Y +E HF CGSV V I+ + G +GF Y+ F + D
Sbjct: 276 ETSSRDKRSVFVGNLPYKVEESAVEKHFLDCGSVVAVRIVRDPVTGVGRGFGYVLFENTD 335
Query: 145 SVQTAMAMDESLFRGRQIKV-------NPKRTNRPGISTTN 178
+V A+ ++ S GR+++V K+ + PG+ N
Sbjct: 336 AVHLALKLNNSELMGRKLRVMRSIHKEKLKQNSNPGLKNVN 376
Score = 40 (19.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 27 EADQSKCTDEAELAAMKARVREMEEEAE--KLKQLQSEVDKQMS 68
E + + DE E + + + ++E A+ K+K+ S+ DK+++
Sbjct: 77 ETTKKRKQDEEEARSSQIQRPLLQEPAKTVKVKKKLSDADKKLA 120
>SGD|S000005401 [details] [associations]
symbol:NOP12 "Protein involved in pre-rRNA processing and
ribosomal biogenesis" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0030684 "preribosome" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000005401 GO:GO:0005730 EMBL:BK006948 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000463 eggNOG:COG0724
GO:GO:0030684 KO:K14837 HOGENOM:HOG000157415 OMA:SIRYRSI
OrthoDB:EOG4JHGQR EMBL:Z74783 PIR:S66726 RefSeq:NP_014601.1
ProteinModelPortal:Q08208 SMR:Q08208 DIP:DIP-6505N IntAct:Q08208
MINT:MINT-669520 STRING:Q08208 PaxDb:Q08208 PeptideAtlas:Q08208
EnsemblFungi:YOL041C GeneID:854116 KEGG:sce:YOL041C CYGD:YOL041c
GeneTree:ENSGT00390000011249 NextBio:975813 Genevestigator:Q08208
GermOnline:YOL041C Uniprot:Q08208
Length = 459
Score = 138 (53.6 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
RSI+VGN+D+ E L HF CG + V I+ + KGFAY++F D SV A+
Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338
Query: 152 MDESLFRGRQIKVNPKRTNRP 172
++E + + K + T +P
Sbjct: 339 LNEKPMKSQ--KQEDENTKKP 357
Score = 48 (22.0 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 17/73 (23%), Positives = 31/73 (42%)
Query: 27 EADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEK 86
+A +SK DE E + + + EEAE + + V K E++
Sbjct: 84 KAKKSKRNDEDEDLEARYYAKLLNEEAEA-EDDKPTVTKTDETSVPLTSAAKKVDFKEDE 142
Query: 87 KEADLRSIYVGNV 99
E R++++GN+
Sbjct: 143 LEKAERTVFIGNI 155
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA- 151
S+YVGNV Y T EE+ ++F G VN V I+ ++ G P+GFA++EF+++ Q A+
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 152 MDESLFRGRQIKVN 165
++ F GR ++VN
Sbjct: 67 LNGVAFNGRNLRVN 80
>TAIR|locus:2087685 [details] [associations]
symbol:AT3G12640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.20.1390.10
IPI:IPI01019808 RefSeq:NP_566430.3 UniGene:At.42987
UniGene:At.63536 ProteinModelPortal:F4J9U9 SMR:F4J9U9 PRIDE:F4J9U9
EnsemblPlants:AT3G12640.1 GeneID:820444 KEGG:ath:AT3G12640
OMA:LVEYVIV Uniprot:F4J9U9
Length = 638
Score = 152 (58.6 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 87 KEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSV 146
++A R+I+V NV +GAT + L HF+ G V + I+ + G P G AYIEF K++
Sbjct: 475 EDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAA 534
Query: 147 QTAMAMDESLFRGRQIKV 164
+ A+++D + F R +K+
Sbjct: 535 ENALSLDGTSFMSRILKI 552
Score = 36 (17.7 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 42 MKARVREMEEEAEKLKQLQSEVDK 65
MKA V E E+A+K K +S D+
Sbjct: 243 MKA-VAEAAEDAKKPKSGRSVFDR 265
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 130 (50.8 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAM 152
+++VGN+ + AT ++L + F GCG + + + + G KGF Y+ F+D DS + + M
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM 426
Query: 153 DESLFRGRQIKVN 165
+ GR +++
Sbjct: 427 NGHFIAGRPCRLD 439
Score = 61 (26.5 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 19/79 (24%), Positives = 34/79 (43%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMG 70
E E+ + E+ E++ S + E+E ++ ++ E EEE + + E + S
Sbjct: 86 ESESESSSSESESSSSESESS--SSESESSSSESSSSESEEEVIVKTEEKKESSSESSSS 143
Query: 71 XXXXXXXXXXXXIEEKKEA 89
IEEKKE+
Sbjct: 144 SESEEEEEAVVKIEEKKES 162
Score = 54 (24.1 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 20/92 (21%), Positives = 34/92 (36%)
Query: 2 SDQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQS 61
S + +S EEE + + E+ S ++E E A +K ++ E ++ + S
Sbjct: 114 SSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKK-ESSSDSSSESSS 172
Query: 62 EVDKQMSMGXXXXXXXXXXXXIEEKKEADLRS 93
+ S EEKKE S
Sbjct: 173 SESESESSSSESEEEEEVVEKTEEKKEGSSES 204
Score = 41 (19.5 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 8/46 (17%), Positives = 22/46 (47%)
Query: 22 ENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQM 67
E E++ + E+E ++ ++ E E+ + SE ++++
Sbjct: 81 EESSSESESESSSSESESSSSESESSSSESESSSSESSSSESEEEV 126
Score = 40 (19.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMG 70
+E + ++ + + E++ S E E ++ + E +E +S D G
Sbjct: 160 KESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESG 219
Score = 39 (18.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 18/96 (18%), Positives = 37/96 (38%)
Query: 2 SDQENSFIHEEENFENGDHI--ENGDMEADQS---KCTDEAELAAMKARVREMEEEAEKL 56
S+ E+S E + + E+ E+++ K ++ E ++ + E EEE E +
Sbjct: 94 SESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAV 153
Query: 57 KQLQ----SEVDKQMSMGXXXXXXXXXXXXIEEKKE 88
+++ S D EE++E
Sbjct: 154 VKIEEKKESSSDSSSESSSSESESESSSSESEEEEE 189
Score = 37 (18.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 48 EMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRS 93
E E + + + SE + S EEKKE+ S
Sbjct: 95 ESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSES 140
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAM 152
S+YVGN + T ++L ++F G+V+ V I+C++ G P+GFA++EF ++ + Q A+
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 153 DESL-FRGRQIKVN 165
+ F GR ++VN
Sbjct: 65 FNGVDFNGRALRVN 78
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAM 152
S+YVGN + T ++L ++F G+V+ V I+C++ G P+GFA++EF ++ + Q A+
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 153 DESL-FRGRQIKVN 165
+ F GR ++VN
Sbjct: 65 FNGVDFNGRALRVN 78
>RGD|1310161 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310161 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 HOGENOM:HOG000060230
HOVERGEN:HBG052167 OrthoDB:EOG46DM2Z EMBL:BC087155 IPI:IPI00359899
RefSeq:NP_001014037.1 UniGene:Rn.93968 ProteinModelPortal:Q5M9F1
PhosphoSite:Q5M9F1 PRIDE:Q5M9F1 Ensembl:ENSRNOT00000027145
GeneID:307956 KEGG:rno:307956 UCSC:RGD:1310161 InParanoid:Q5M9F1
OMA:KKLAAIX NextBio:658166 Genevestigator:Q5M9F1
GermOnline:ENSRNOG00000020004 Uniprot:Q5M9F1
Length = 428
Score = 151 (58.2 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 32/94 (34%), Positives = 50/94 (53%)
Query: 85 EKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKD 144
E D RS++VGN+ Y LE HF CGS+ V I+ N G +GF Y+ F + D
Sbjct: 278 ETASRDKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTD 337
Query: 145 SVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 178
+V A+ ++ S GR+++V + N+ + N
Sbjct: 338 AVHLALKLNNSELMGRKLRVM-RSVNKEKLKQQN 370
>MGI|MGI:1098653 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1098653 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 KO:K14837 CTD:23029 HOVERGEN:HBG052167
OrthoDB:EOG46DM2Z EMBL:AK078099 IPI:IPI00225915 RefSeq:NP_766350.2
UniGene:Mm.28199 ProteinModelPortal:Q8C5L7 SMR:Q8C5L7
PhosphoSite:Q8C5L7 PRIDE:Q8C5L7 GeneID:52202 KEGG:mmu:52202
InParanoid:Q8C5L7 NextBio:308648 Bgee:Q8C5L7 CleanEx:MM_RBM34
Genevestigator:Q8C5L7 GermOnline:ENSMUSG00000033931 Uniprot:Q8C5L7
Length = 375
Score = 148 (57.2 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 85 EKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKD 144
E D RS++VGN+ Y LE HF CGS+ V I+ N G +GF Y+ F + D
Sbjct: 284 ETASRDKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTD 343
Query: 145 SVQTAMAMDESLFRGRQIKV 164
+V A+ ++ S GR+++V
Sbjct: 344 AVHLALKLNNSELMGRKLRV 363
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMD 153
IYVG++ Y TA+EL+S F G + ++ ++ G KGFA+I + +D+ Q A++
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 154 ESL-FRGRQIKVNPKRTN 170
+ +GR+I+VN R N
Sbjct: 80 NGIDLQGRKIRVNIAREN 97
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMD 153
IYVG++ Y TA+EL+S F G + ++ ++ G KGFA+I + +D+ Q A++
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 154 ESL-FRGRQIKVNPKRTN 170
+ +GR+I+VN R N
Sbjct: 80 NGIDLQGRKIRVNIAREN 97
>TAIR|locus:2061077 [details] [associations]
symbol:AT2G24350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.20.1390.10 EMBL:BT033027
EMBL:AK228942 IPI:IPI00535352 RefSeq:NP_180012.2 UniGene:At.13805
UniGene:At.39171 ProteinModelPortal:Q0WPW8 SMR:Q0WPW8 PRIDE:Q0WPW8
EnsemblPlants:AT2G24350.1 GeneID:816971 KEGG:ath:AT2G24350
TAIR:At2g24350 eggNOG:NOG242858 HOGENOM:HOG000120691
InParanoid:Q0WPW8 OMA:TEPHIAY PhylomeDB:Q0WPW8
ProtClustDB:CLSN2690892 Genevestigator:Q0WPW8 Uniprot:Q0WPW8
Length = 537
Score = 145 (56.1 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 46/162 (28%), Positives = 79/162 (48%)
Query: 5 ENSFIHEEENFENGDHIENGDMEADQSKCTDE-AELAAMKARVREMEEEAEKLKQLQSEV 63
E S++ + + E E + + QS D +E+ +K +++E+E + KQL+ +
Sbjct: 364 EFSYVPQYKQAEQD--FEKPSLLSHQSTKQDIFSEIKNVKEKMQELELRIIQSKQLKKQK 421
Query: 64 DKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHG-CGSVNRVT 122
++ E+ E+ R I+V NV Y A E + F CG+V V
Sbjct: 422 VEERKPSPQSGESQYQ----EDVSES--RVIHVTNVYYAAKKEAISMFFSSKCGAVQNVI 475
Query: 123 ILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKV 164
++ + HPKG A++ FA K+SV A+A+ ++F R IKV
Sbjct: 476 VVTDPVTRHPKGTAFVTFATKESVGKAVALSGTMFYSRPIKV 517
>ZFIN|ZDB-GENE-040718-77 [details] [associations]
symbol:rbm34 "RNA binding motif protein 34"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-77 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K14837 GeneTree:ENSGT00390000011249 CTD:23029
HOGENOM:HOG000060230 HOVERGEN:HBG052167 OMA:KEFGHIE EMBL:BX569779
EMBL:BC075875 IPI:IPI00494733 RefSeq:NP_001002382.1
UniGene:Dr.84194 STRING:Q6DHU2 Ensembl:ENSDART00000039490
GeneID:436655 KEGG:dre:436655 NextBio:20831100 Uniprot:Q6DHU2
Length = 411
Score = 142 (55.0 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK 143
+ K RSI+VGN+ Y + L++HF CG++ V ++ ++ G KGF Y+ F
Sbjct: 244 QHSKHDHKRSIFVGNLPYDISELPLQNHFQECGNIEAVRLVRDRDSGMGKGFGYVLFESP 303
Query: 144 DSVQTAMAMDESLFRGRQIKV 164
DSV A+ ++ S + R+I+V
Sbjct: 304 DSVMLALKLNGSTLQQRKIRV 324
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 143 (55.4 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 41/156 (26%), Positives = 77/156 (49%)
Query: 14 NFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDK--QMSMGX 71
N EN D E+G+ A +D L + R++E E E + +++ EV++ +++
Sbjct: 232 NEENKDKNESGENLAANENISDLEWLKSRSTRIKENGEVPEIVPEVK-EVNEVTEVTQQS 290
Query: 72 XXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGH 131
I +K E R +++ N+ Y A+ E+ S F G++ V I + G
Sbjct: 291 DNEPELTPEEQIAQKIEETGR-LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGK 349
Query: 132 PKGFAYIEFADK-DSVQTAMAMDESLFRGRQIKVNP 166
KGF Y++F K D+ + ++D+ +F+GR + + P
Sbjct: 350 SKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHILP 385
>UNIPROTKB|F1NIM5 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000011249
OMA:AEGHSKS EMBL:AADN02051930 IPI:IPI00589396
Ensembl:ENSGALT00000023153 Uniprot:F1NIM5
Length = 392
Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 35/132 (26%), Positives = 66/132 (50%)
Query: 50 EEEAEKLKQLQSEVD-KQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEEL 108
+EE + +K L + + +++ G + + K RS+++GN+ Y + +
Sbjct: 213 KEERDAVKALNYKRNGTEVASGFHIRVDSASKNSLHDNK----RSVFLGNLAYDISDSAV 268
Query: 109 ESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNP-- 166
HF CG V V I+ ++ G KGF Y+ F + D+V A+ ++ S GR+++V
Sbjct: 269 REHFADCGDVVAVRIVRDRQSGMGKGFGYVLFENTDAVHLALKLNNSDLMGRKLRVKRCV 328
Query: 167 KRTNRPGISTTN 178
++ P STT+
Sbjct: 329 EKGRAPQRSTTS 340
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ D+R++YVGN+ Y A + F GSV+ V ++ +K G +GF ++E A D +
Sbjct: 67 DEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDDLDK 126
Query: 148 TAMAMDESLFRGRQIKVNPKRTNRP 172
A++++ F+ R +KV + RP
Sbjct: 127 AISALNDTEFQQRTLKVREAK-ERP 150
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ D+R++YVGN+ Y A + F GSV+ V ++ +K G +GF ++E A D +
Sbjct: 67 DEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDDLDK 126
Query: 148 TAMAMDESLFRGRQIKVNPKRTNRP 172
A++++ F+ R +KV + RP
Sbjct: 127 AISALNDTEFQQRTLKVREAK-ERP 150
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 134 (52.2 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F GSV ++ ++ G PKG+ + E+ D+++
Sbjct: 16 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 75
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 76 SAMRNLNGREFSGRALRVD 94
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 134 (52.2 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F GSV ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 134 (52.2 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F GSV ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 134 (52.2 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F GSV ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 134 (52.2 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F GSV ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F GSV ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F GSV ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 136 (52.9 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
R I+V NV++ A+ ++L+ F G+V V L K DG KGF Y+ F+ K+ A+A
Sbjct: 996 REIHVSNVNWSASEDDLKELFSRFGTVELVR-LPRKVDGGSKGFGYVVFSSKEEATAALA 1054
Query: 152 MDESLFRGRQIKV 164
M E FRGR + V
Sbjct: 1055 MHEQEFRGRPLHV 1067
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA-M 152
++VG + +G L+ F G V T++ ++ G +GF ++ F+ +DS A+ M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 153 DESLFRGRQIKVN--PKRTNRP 172
D GRQI+VN +R++ P
Sbjct: 97 DGKELNGRQIRVNLATERSSAP 118
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
EAD R+++VGN++ T E L FH G V +V I +K DG PK FA++ F + SV
Sbjct: 7 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVP 64
Query: 148 TAMAMDESL-FRGRQIKV 164
AM + + GR IK+
Sbjct: 65 YAMNLLNGIKLYGRPIKI 82
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
EAD R+++VGN++ T E L FH G V +V I +K DG PK FA++ F + SV
Sbjct: 7 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVP 64
Query: 148 TAMAMDESL-FRGRQIKV 164
AM + + GR IK+
Sbjct: 65 YAMNLLNGIKLYGRPIKI 82
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
EAD R+++VGN++ T E L FH G V +V I +K DG PK FA++ F + SV
Sbjct: 4 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVP 61
Query: 148 TAMAMDESL-FRGRQIKV 164
AM + + GR IK+
Sbjct: 62 YAMNLLNGIKLYGRPIKI 79
>TAIR|locus:2100696 [details] [associations]
symbol:PHIP1 "phragmoplastin interacting protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0009920
"cell plate formation involved in plant-type cell wall biogenesis"
evidence=IDA] [GO:0019898 "extrinsic to membrane" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
GO:GO:0046872 GO:GO:0019898 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 EMBL:AL132954 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P09651 GO:GO:0009920 IPI:IPI00527178 PIR:T47673
RefSeq:NP_191094.1 UniGene:At.28318 ProteinModelPortal:Q9M3B8
SMR:Q9M3B8 STRING:Q9M3B8 PRIDE:Q9M3B8 EnsemblPlants:AT3G55340.1
GeneID:824700 KEGG:ath:AT3G55340 TAIR:At3g55340 InParanoid:Q9M3B8
OMA:KKRRTCY PhylomeDB:Q9M3B8 ProtClustDB:CLSN2685284
Genevestigator:Q9M3B8 Uniprot:Q9M3B8
Length = 597
Score = 130 (50.8 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 45/185 (24%), Positives = 78/185 (42%)
Query: 4 QENSFIHEEENFENGDHIENGDMEADQSKCTDEA----ELAAMKARVREMEEEAEKLKQL 59
+E+ I E E NG E D + + + D+A EL + E + + +K K+
Sbjct: 61 REDDEIRENE-VGNGGSSEKTDTKIKKKRKRDDAVEVDELEGDEGTKEEQKPQKKKNKKK 119
Query: 60 Q-----SEVDKQMSMGXXXXXXXXXXXXIE-EKKEAD---LRSIYVGNVDYGATAEELES 110
+ ++ K+ G + + KE D +YVG + Y +T +E+ S
Sbjct: 120 KKKRKVNKTPKKAEEGNVEEKVKVEEIEVNTDNKEEDGVVPNKLYVGGIPYQSTEDEIRS 179
Query: 111 HFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPK-RT 169
+F CG + +V DG G A+I F +D + A+A D + R + + +T
Sbjct: 180 YFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAFDRAAMGDRYLTIQQYVKT 239
Query: 170 NRPGI 174
P I
Sbjct: 240 TTPSI 244
Score = 125 (49.1 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMD 153
+Y+GN+ + T ++ F C +N V + NK G KG+A+++F D SV A+ +D
Sbjct: 264 VYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLD 322
Query: 154 ESLFRGRQIKVNPKRTNRPGISTT 177
+ + GR +K+ +RP T
Sbjct: 323 QQVICGRPVKICCALKDRPATDHT 346
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+ S+ V N+ Y + + L F G V V I +++ +GFA++ F DK + AM
Sbjct: 13 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72
Query: 151 -AMDESLFRGRQIKVNPKRTNRP 172
AMD ++ GR+++V R RP
Sbjct: 73 DAMDGAVLDGRELRVQMARYGRP 95
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+ S+ V N+ Y + + L F G V V I +++ +GFA++ F DK + AM
Sbjct: 13 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72
Query: 151 -AMDESLFRGRQIKVNPKRTNRP 172
AMD ++ GR+++V R RP
Sbjct: 73 DAMDGAVLDGRELRVQMARYGRP 95
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 129 (50.5 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 114 (45.2 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
K E D ++VG + + + ++L+ +F G V TI + G +GF +I F + DS
Sbjct: 39 KCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDS 98
Query: 146 VQTAMAMDESLFRGRQIKVNPKR 168
V + E GRQI +PKR
Sbjct: 99 VDRVLQQKEHRLDGRQI--DPKR 119
Score = 50 (22.7 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 1 MSDQENSFIHEEENFENGDHI-ENG---DMEADQSKCTDEA 37
M EN EEN G+ ENG ++ D SKC ++A
Sbjct: 7 METSENG---NEENLNGGEAAGENGAGEGLQIDASKCEEDA 44
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 129 (50.5 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 129 (50.5 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|E1BWJ0 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 OMA:SQAVMKM
EMBL:AADN02034959 EMBL:AADN02034960 EMBL:AADN02034961
EMBL:AADN02034962 EMBL:AADN02034963 IPI:IPI00823214
ProteinModelPortal:E1BWJ0 Ensembl:ENSGALT00000038892
ArrayExpress:E1BWJ0 Uniprot:E1BWJ0
Length = 731
Score = 122 (48.0 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 85 EKKEADLRSIYVGNVDYGATAEE--LESHFHGCGSVNRVT-ILCNKFDGHPKGFAYIEFA 141
E D +++V N+ Y T E L+ F CG V++V + NK G +G+ Y+EF
Sbjct: 630 EHDSKDNITVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNK--GTFRGYCYVEFK 687
Query: 142 DKDSVQTAMAMDESLFRGRQIKVNP 166
D+ S A+ MD + GR + V+P
Sbjct: 688 DEKSALQALGMDRKVVEGRPMFVSP 712
Score = 47 (21.6 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 5 ENSFIHEEENFENGDHIENGDME--ADQSKCTD-EAELAAMKARVREMEEE 52
E + EE+ GD GD E D D E E +A ++ +EE+
Sbjct: 7 EAAAAEEEKRMAEGDPESGGDSEDEGDSDSSGDGEDEEKENEAEIQRLEEQ 57
Score = 45 (20.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 30 QSKCTDEAELAAMKARV-REMEEEAEKLKQLQSE 62
+ K T++ A +A + R+ EE+AE+ KQ ++E
Sbjct: 558 KKKQTEKNRAAEKEAALARQEEEKAEQRKQSRAE 591
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 129 (50.5 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 129 (50.5 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 129 (50.5 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 129 (50.5 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 129 (50.5 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 129 (50.5 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 129 (50.5 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 129 (50.5 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 129 (50.5 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 129 (50.5 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 129 (50.5 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 129 (50.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|I3L8K8 [details] [associations]
symbol:I3L8K8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 EMBL:CT956011
Ensembl:ENSSSCT00000026978 OMA:HRISVAF Uniprot:I3L8K8
Length = 87
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
++EAD R+++VGN++ E L F G + +VTI C DG+PK F ++ F +S
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTI-CKDRDGNPKSFGFVCFKHPES 62
Query: 146 VQTAMAMDESL-FRGRQIKV 164
V A+A+ + GR I V
Sbjct: 63 VSYAIALLNGIRLYGRPINV 82
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 129 (50.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 129 (50.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 72 SAMRNLNGREFSGRALRVD 90
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 128 (50.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 20 DRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETAL 79
Query: 148 TAMA-MDESLFRGRQIKVN 165
+AM ++ F GR ++V+
Sbjct: 80 SAMRNLNGREFSGRALRVD 98
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 126 (49.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
R ++VGN+ YG + E++ F G V ++ ++ G PKGF + E+ D DS +A+
Sbjct: 8 RVVFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAVR 67
Query: 152 -MDESLFRGRQIKV---NPK-RTNRP 172
++++ GR+++V N K TN P
Sbjct: 68 NLNDTEIMGRKLRVDFSNEKPSTNDP 93
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
L I+V + + E L++HF G++ ++ ++ KGF +++F K+SVQ A+
Sbjct: 3 LNKIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAI 62
Query: 151 AMDESLFRGRQIKVN 165
D + GR++ VN
Sbjct: 63 NSDNEI-NGRKLVVN 76
>ASPGD|ASPL0000005213 [details] [associations]
symbol:AN6074 species:162425 "Emericella nidulans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OMA:QLAYAIF ProteinModelPortal:C8V2S8 EnsemblFungi:CADANIAT00006943
Uniprot:C8V2S8
Length = 293
Score = 125 (49.1 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 23/80 (28%), Positives = 47/80 (58%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
+S+++GN+ Y T E+++ G+V + ++ N G PKG+ + +FAD D+ +A+
Sbjct: 8 KSVFLGNIPYNLTEEQVKDILSTAGTVTKFRLMMNPETGKPKGYGFADFADADAAASAVR 67
Query: 152 -MDESLFRGRQIKVNPKRTN 170
+++ GR+I+V+ N
Sbjct: 68 NLNDYEIMGRKIRVDWPHNN 87
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 128 (50.1 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAD- 142
E+K A + +IYV NV+ T EEL HF CG++ ++C++ G KGF ++ F+
Sbjct: 296 EQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTP 354
Query: 143 KDSVQTAMAMDESLFRGRQIKV 164
++++ +F G+ + V
Sbjct: 355 EEAIDAVKTFHGQMFHGKPLYV 376
>SGD|S000004949 [details] [associations]
symbol:HRB1 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0016021 "integral to membrane"
evidence=ISM] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004949 GO:GO:0016021 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
eggNOG:COG0724 EMBL:X77114 GO:GO:0016973
GeneTree:ENSGT00410000025635 HOGENOM:HOG000111155 OrthoDB:EOG4F21C2
EMBL:U02536 EMBL:Z71280 EMBL:DQ881449 EMBL:EF123128 PIR:S45459
RefSeq:NP_014394.2 ProteinModelPortal:P38922 SMR:P38922
DIP:DIP-4959N IntAct:P38922 MINT:MINT-475842 STRING:P38922
PaxDb:P38922 PeptideAtlas:P38922 EnsemblFungi:YNL004W GeneID:855728
KEGG:sce:YNL004W CYGD:YNL004w OMA:KTHEVIV NextBio:980105
Genevestigator:P38922 GermOnline:YNL004W Uniprot:P38922
Length = 454
Score = 121 (47.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 33/92 (35%), Positives = 48/92 (52%)
Query: 84 EEKKEADL-RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAD 142
EEK + SI+VGN+ Y +T E+L F G V R I+ ++ GH +G +EF +
Sbjct: 152 EEKVNRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFTN 209
Query: 143 KDSVQTAMAM-DESLFRGRQIKV---NPKRTN 170
D V A+ D + F R+I V NP +N
Sbjct: 210 SDDVDRAIRQYDGAFFMDRKIFVRQDNPPPSN 241
Score = 40 (19.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 4 QENSFIHEEENFENGDHIENGDMEADQSKCTD 35
+E S E E F N D+ + D D+ + D
Sbjct: 68 RERSDYRERERFNNRDNPRSRDRYDDRRRGRD 99
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 116 (45.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 87 KEADLRS-IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
+E+D S ++VGN+ + L F CG+V ++ ++ G KGF Y++FA +
Sbjct: 233 EESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEE 292
Query: 146 VQTAMAMDESLF-RGRQIKVN 165
+ A + F GR+IKV+
Sbjct: 293 AEKAHGEKQGAFIDGREIKVD 313
Score = 49 (22.3 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDEAELAAMKA----RVREMEEEAEKLKQLQSEVDKQ 66
+EE + D + D S +E + A +A R E EEEA K E DK
Sbjct: 179 KEETDSDSDSDSDSDSSGSDSSDDEEEKPAKTEAPSKKRKAEEEEEAPAKKTKTEESDKP 238
Query: 67 MSM 69
++
Sbjct: 239 STL 241
Score = 41 (19.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 16 ENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMS 68
E+ D + + EAD S +D +E A A + +K K +V+K S
Sbjct: 99 ESSDSDSSSESEADSSDSSD-SESDAKPAPKEKAATNVDK-KAAAKKVEKSES 149
>DICTYBASE|DDB_G0275459 [details] [associations]
symbol:DDB_G0275459 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275459 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724 KO:K11294
RefSeq:XP_643642.1 ProteinModelPortal:Q75K16 STRING:Q75K16
PRIDE:Q75K16 EnsemblProtists:DDB0231494 GeneID:8620229
KEGG:ddi:DDB_G0275459 InParanoid:Q75K16 OMA:LRINGAN Uniprot:Q75K16
Length = 299
Score = 124 (48.7 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
E + +I N+ + ++ F CGS++RV++ + G KGFA++ F +D+V+
Sbjct: 157 EGEPTTIVCRNIAFTVDETLVKEFFSKCGSISRVSLPVYEDSGRLKGFAFVSFDSEDAVE 216
Query: 148 TAMAMDESLFRGRQIKVNPKRTNRPG 173
A+A+ + F GR+I+V +R+ R G
Sbjct: 217 KAIALTGTKFEGREIQV--ERSQRGG 240
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 128 (50.1 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 42/176 (23%), Positives = 78/176 (44%)
Query: 3 DQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQ---- 58
D++ E++ + DH D E D+ + E E + R RE E E E++++
Sbjct: 394 DRDRDREREKDKDRDRDHDRYRDRERDRYR-DRERERRKDREREREREREKERIRRENER 452
Query: 59 --LQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHG-C 115
L+ E + + +EE K DL ++ V N+D A ++ F
Sbjct: 453 ERLRKERELERERREKIREERRLKEEMEEAKRDDL-TVLVLNLDLKADERDIYEFFSEVA 511
Query: 116 GSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNR 171
G V + + ++ G KG AY+EF +++V A+A + + + R IK+ + +
Sbjct: 512 GKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVIKALAANGMMLKNRPIKIQSSQAEK 567
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 128 (50.1 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 42/176 (23%), Positives = 78/176 (44%)
Query: 3 DQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQ---- 58
D++ E++ + DH D E D+ + E E + R RE E E E++++
Sbjct: 394 DRDRDREREKDKDRDRDHDRYRDRERDRYR-DRERERRKDREREREREREKERIRRENER 452
Query: 59 --LQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHG-C 115
L+ E + + +EE K DL ++ V N+D A ++ F
Sbjct: 453 ERLRKERELERERREKIREERRLKEEMEEAKRDDL-TVLVLNLDLKADERDIYEFFSEVA 511
Query: 116 GSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNR 171
G V + + ++ G KG AY+EF +++V A+A + + + R IK+ + +
Sbjct: 512 GKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVIKALAANGMMLKNRPIKIQSSQAEK 567
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 19/80 (23%), Positives = 38/80 (47%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
+K+ I+VG + Y T L +F G G + ++ ++ G +G+ ++ AD+ +
Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 146 VQTAMAMDESLFRGRQIKVN 165
+ A + GR+ VN
Sbjct: 65 AERACKDPNPIIDGRKANVN 84
>TAIR|locus:2083248 [details] [associations]
symbol:AT3G52660 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 eggNOG:NOG258596
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 EMBL:AL353912
KO:K13161 HOGENOM:HOG000243749 ProtClustDB:CLSN2698006
EMBL:BT029158 EMBL:AK176325 EMBL:AK176862 IPI:IPI00534328
PIR:T49019 RefSeq:NP_001030849.1 RefSeq:NP_190834.1
UniGene:At.48763 ProteinModelPortal:Q9LXJ8 SMR:Q9LXJ8 PaxDb:Q9LXJ8
PRIDE:Q9LXJ8 EnsemblPlants:AT3G52660.1 EnsemblPlants:AT3G52660.2
GeneID:824432 KEGG:ath:AT3G52660 TAIR:At3g52660 InParanoid:Q9LXJ8
OMA:HDSMESE PhylomeDB:Q9LXJ8 ArrayExpress:Q9LXJ8
Genevestigator:Q9LXJ8 Uniprot:Q9LXJ8
Length = 471
Score = 126 (49.4 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 36/152 (23%), Positives = 71/152 (46%)
Query: 22 ENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXXX 81
E D++ D D E+ + E+EEE ++++++ E+++++ +
Sbjct: 19 ERVDLDGDN----DPEEILEEEVEYEEVEEE--EIEEIEEEIEEEVEVEEEEEEEDAVAT 72
Query: 82 XIEEKKEADLR---------SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHP 132
EE+K+ + +Y+G + AT +L+ G V V I+ K G
Sbjct: 73 EEEEEKKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDG 132
Query: 133 KGFAYIEFADKDSVQTAM-AMDESLFRGRQIK 163
KG+A++ F KD A+ ++ + FRG++IK
Sbjct: 133 KGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIK 164
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 121 (47.7 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+ S+ V N+ Y + E L F G V V I +++ +GFA++ F DK + AM
Sbjct: 13 MTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72
Query: 151 -AMDESLFRGRQIKVNPKRTNRP 172
AMD +L GR+++V R RP
Sbjct: 73 DAMDGALLDGRELRVQMARYGRP 95
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 126 (49.4 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 38/157 (24%), Positives = 65/157 (41%)
Query: 19 DHIENG--DMEADQSKCTDEAELAAM-KARVREMEEEAEKLKQLQSEVDKQMSM-GXXXX 74
D + G D E+D+ + + E + + K R RE E ++ +K+ +
Sbjct: 91 DKVREGSRDKESDRERSSKERDRSDRDKPRDRERREREKRSSSRSRREEKEPEVVERGSR 150
Query: 75 XXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKG 134
E E D R+++ + AT ++ F G V V ++ ++ KG
Sbjct: 151 RHRDKKDEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKG 210
Query: 135 FAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNR 171
YIEF D SV A+A+ LF G+ + V P +
Sbjct: 211 VGYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEK 247
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 125 (49.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 26/85 (30%), Positives = 50/85 (58%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ +RS++VGN+ Y AT E+L+ F G V + ++ ++ G PKGF + E+ D+++
Sbjct: 12 DKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETAL 71
Query: 148 TAMA-MDESLFRGRQIKVNPKRTNR 171
+AM ++ GR ++V+ T +
Sbjct: 72 SAMRNLNGYEIGGRTLRVDNACTEK 96
>POMBASE|SPBP22H7.02c [details] [associations]
symbol:SPBP22H7.02c "RNA-binding protein Mrd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0030686 "90S preribosome"
evidence=ISO] [GO:0034462 "small-subunit processome assembly"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
Length = 833
Score = 127 (49.8 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 44/175 (25%), Positives = 78/175 (44%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDE-AELAAMKARVREMEEEA----EKLKQLQSEV-D 64
E E GD +N +A DE L + + ++ EEE ++LK E D
Sbjct: 226 ESEQAAEGDTAKNSGTDAQAPLSDDEWLRLHRTRIKEKQPEEEVSVVGDELKSFDKENND 285
Query: 65 KQMS------MGXXXXXXXXXXXXIEEKKEADLRS----IYVGNVDYGATAEELESHFHG 114
+ + + E+++ L S +++ N+ Y ++L+S F
Sbjct: 286 EHLERVTNDKIADASMLQKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGP 345
Query: 115 CGSVNRVTILCNKFDGHPKGFAYIEFADKD-SVQTAMAMDESLFRGRQIKVNPKR 168
G + +V + +K +PKGFAYI+F D D +V+ + +D F+GR + V P +
Sbjct: 346 FGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAK 400
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 123 (48.4 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
+ I+VG + E+L SHF G V + + ++ +G +GFA++EF + + A+A
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALA 88
Query: 152 MDESLFRGRQIKVNPKRT 169
E +G+ ++V P ++
Sbjct: 89 AREQTIKGKSVEVKPAKS 106
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 112 (44.5 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 32/104 (30%), Positives = 51/104 (49%)
Query: 51 EEAEKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELES 110
E+ +K QL + K M + E KKE D R+++V N+ Y T +E+++
Sbjct: 330 EDMDKALQLNGK--KLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKN 387
Query: 111 HFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDE 154
F + V ++ NK +G KG AYIEF K + A++E
Sbjct: 388 VFE---NALEVRLVLNK-EGSSKGMAYIEF--KTEAEAEKALEE 425
Score = 55 (24.4 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDEAELA-AMKARVREM-EEEAEKLKQLQSEV 63
E+E E+ D + D E D+ + DE + A R +EM + A + K+ ++E+
Sbjct: 218 EDEEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTEI 272
Score = 53 (23.7 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 2 SDQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLK 57
S+ E E+E+ E+ D E + E++ K EA K + EA+K K
Sbjct: 214 SEDEEDEEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKK 269
Score = 40 (19.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDEAELAAMKAR 45
+EE+ E + E+ + + D+ + +DE E A+ +
Sbjct: 109 KEESEEEDEDDEDDEEDEDEEEESDEEEEPAVPVK 143
Score = 38 (18.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 3 DQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEA 53
D+E+ EE+ E+ D E EA + + A +A +A+ ++ E +A
Sbjct: 226 DEEDEDDEEEDEEESED--EKPVKEAPGKRKKEMANKSAPEAKKKKTEIKA 274
>DICTYBASE|DDB_G0287335 [details] [associations]
symbol:DDB_G0287335 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
Uniprot:Q54KH9
Length = 91
Score = 106 (42.4 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMD 153
I+V + + E L+ HF GS+N ++ +K +GF ++ F DSVQ AM +
Sbjct: 5 IFVSQLPWSVCREALKQHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAMEAE 64
Query: 154 ESLFRGRQIKVN 165
+ GR++ V+
Sbjct: 65 NEM-GGRKLVVS 75
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 106 (42.4 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
+ +YVG++ Y AT ++L F G+V V I+ + G KG Y+ ++ + A+
Sbjct: 3 KELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62
Query: 151 AMDESLFRGRQIKVNPKRTNR 171
+D +L R R I V+ R +
Sbjct: 63 TLDGALLRNRVITVSVARPQK 83
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 106 (42.4 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
+ +YVG++ Y AT ++L F G+V V I+ + G KG Y+ ++ + A+
Sbjct: 3 KELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62
Query: 151 AMDESLFRGRQIKVNPKRTNR 171
+D +L R R I V+ R +
Sbjct: 63 TLDGALLRNRVITVSVARPQK 83
>MGI|MGI:1916394 [details] [associations]
symbol:Slirp "SRA stem-loop interacting RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000961 "negative regulation of mitochondrial RNA
catabolic process" evidence=IGI] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1916394 GO:GO:0005739 GO:GO:0005634 GO:GO:0006355
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
HOGENOM:HOG000276232 CTD:81892 eggNOG:NOG291073
GeneTree:ENSGT00390000008624 HOVERGEN:HBG079935 OMA:SNELREH
OrthoDB:EOG4Z62Q4 ChiTaRS:SLIRP EMBL:AJ293625 EMBL:AK007699
EMBL:BC100567 IPI:IPI00318935 IPI:IPI00462115 RefSeq:NP_081234.2
UniGene:Mm.355701 ProteinModelPortal:Q9D8T7 SMR:Q9D8T7
STRING:Q9D8T7 PhosphoSite:Q9D8T7 PaxDb:Q9D8T7 PRIDE:Q9D8T7
Ensembl:ENSMUST00000160488 Ensembl:ENSMUST00000161023 GeneID:380773
KEGG:mmu:380773 UCSC:uc007oje.2 InParanoid:Q9D8T7 NextBio:401221
Bgee:Q9D8T7 CleanEx:MM_1810035L17RIK Genevestigator:Q9D8T7
GermOnline:ENSMUSG00000021040 Uniprot:Q9D8T7
Length = 112
Score = 106 (42.4 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 95 YVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDE 154
+V + + A A EL HF G V R T+ +K G +G +++F+ ++ +Q A+ +
Sbjct: 22 FVRKIPWTAAASELREHFAQFGHVRRCTVPFDKETGFHRGMGWVQFSSQEELQNALQQEH 81
Query: 155 SLFRGRQIKVNPKR 168
+ G +I V +R
Sbjct: 82 HIIDGVKIHVQAQR 95
>RGD|1585290 [details] [associations]
symbol:Slirp "SRA stem-loop interacting RNA binding protein"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000961 "negative regulation of mitochondrial RNA
catabolic process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1585290 GO:GO:0005739 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473982 CTD:81892
GeneTree:ENSGT00390000008624 OrthoDB:EOG4Z62Q4 IPI:IPI00365864
RefSeq:NP_001102977.1 UniGene:Rn.65910 Ensembl:ENSRNOT00000016479
GeneID:688717 KEGG:rno:688717 UCSC:RGD:1585290 NextBio:737107
Uniprot:D4A4W6
Length = 111
Score = 106 (42.4 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 19/74 (25%), Positives = 40/74 (54%)
Query: 95 YVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDE 154
++ + + A + EL HF G V R T+ +K G +G +++F+ ++ +Q A+ +
Sbjct: 22 FIRKIPWTAASSELREHFAQFGHVRRCTVPFDKETGFHRGMGWVQFSSQEELQNALQEEH 81
Query: 155 SLFRGRQIKVNPKR 168
+ G +I V P++
Sbjct: 82 HIIDGVEIHVQPQK 95
>POMBASE|SPAC16E8.06c [details] [associations]
symbol:nop12 "RNA-binding protein Nop12 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364
"rRNA processing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC16E8.06c EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 KO:K14837
HOGENOM:HOG000157415 OMA:SIRYRSI OrthoDB:EOG4JHGQR PIR:T37786
RefSeq:NP_594218.1 ProteinModelPortal:O13741 STRING:O13741
EnsemblFungi:SPAC16E8.06c.1 GeneID:2542314 KEGG:spo:SPAC16E8.06c
NextBio:20803375 Uniprot:O13741
Length = 438
Score = 124 (48.7 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
R ++VGN+ + A E L +F CGS++ V I+ + KGFAYI+F D V A+
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 152 MDESLF-RGRQIKVNPKRTNRP 172
++E GR +++ ++ +P
Sbjct: 330 LNEKKMPEGRTLRIMRAKSTKP 351
>UNIPROTKB|F1NF69 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00577406 Ensembl:ENSGALT00000007806
ArrayExpress:F1NF69 Uniprot:F1NF69
Length = 772
Score = 120 (47.3 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 93 SIYVGNVDYGATAEE--LESHFHGCGSVNRVT-ILCNKFDGHPKGFAYIEFADKDSVQTA 149
+++V N+ Y T E L+ F CG V++V + NK G +G+ Y+EF D+ S A
Sbjct: 589 TVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNK--GTFRGYCYVEFKDEKSALQA 646
Query: 150 MAMDESLFRGRQIKVNP 166
+ MD + GR + V+P
Sbjct: 647 LGMDRKVVEGRPMFVSP 663
Score = 43 (20.2 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 31 SKCTDEAELAAMK--ARVREMEEEAEKLKQLQSE 62
++ ++ AA K A R+ EE+AE+ KQ ++E
Sbjct: 480 ARVNEQRAKAAEKEAALARQEEEKAEQRKQSRAE 513
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 119 (46.9 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+ S+ V N+ Y + E L F G V V I +++ +GFA++ F DK + AM
Sbjct: 13 MTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72
Query: 151 -AMDESLFRGRQIKVNPKRTNRP 172
AMD ++ GR+++V R RP
Sbjct: 73 DAMDGAILDGRELRVQMARYGRP 95
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 125 (49.1 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 36/164 (21%), Positives = 74/164 (45%)
Query: 4 QENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEV 63
+++S E+ + E D + +A S T + E ++ ++ +EE++ K +
Sbjct: 295 KDSSSSEEDSDEEESDDEKPPTKKAKVSSKTSKQESSSDESSDESDKEESKDEKVTPKKK 354
Query: 64 DKQMSM-GXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVT 122
D + M + + ++++ GN+ Y ++E+ F G V V
Sbjct: 355 DSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEV--VD 412
Query: 123 ILCNKFD-GHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVN 165
+ + FD G KG+ +IEFA + Q A+ M+ L GR ++++
Sbjct: 413 VRLSSFDDGSFKGYGHIEFASPEEAQKALEMNGKLLLGRDVRLD 456
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 105 (42.0 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 97 GNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA-MDES 155
GN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++ +AM ++
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 156 LFRGRQIKVN 165
F GR ++V+
Sbjct: 62 EFSGRALRVD 71
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 105 (42.0 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA- 151
+++V + + +T E L F G V +V ++ +K PKGFAY+ F+ K+ + A+
Sbjct: 22 TLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLE 81
Query: 152 MDESLFRGRQI 162
++ L GR +
Sbjct: 82 LNAQLVDGRVV 92
>UNIPROTKB|J9NU83 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 EMBL:AAEX03002684
Ensembl:ENSCAFT00000043962 Uniprot:J9NU83
Length = 344
Score = 111 (44.1 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 85 EKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKD 144
E D RS++VGN+ Y +E HF CGS+ V I+ ++ G +GF Y+ F +
Sbjct: 277 ETSSRDKRSVFVGNLPYKVEESAVEEHFLDCGSIVAVRIVRDRVTGVGRGFGYVLFEEVS 336
Query: 145 S 145
S
Sbjct: 337 S 337
Score = 46 (21.3 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 9 IHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLK 57
IH+++ + ++ ++G AD+ K D + + + E+ +E EKLK
Sbjct: 133 IHQKQE-QKRNNFQSGINVADK-KVLDVDHIVLNQRKKIEINQEEEKLK 179
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 112 (44.5 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 32/104 (30%), Positives = 51/104 (49%)
Query: 51 EEAEKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELES 110
E+ +K QL + K M + E KKE D R+++V N+ Y T +E+++
Sbjct: 332 EDMDKALQLNGK--KLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKN 389
Query: 111 HFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDE 154
F + V ++ NK +G KG AYIEF K + A++E
Sbjct: 390 VFE---NALEVRLVLNK-EGSSKGMAYIEF--KTEAEAEKALEE 427
Score = 53 (23.7 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 2 SDQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLK 57
S+ E E+E+ E+ D E + E++ K EA K + EA+K K
Sbjct: 218 SEDEEDEEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKK 273
Score = 40 (19.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDEAELAAMKAR 45
+EE+ E + E+ + + D+ + +DE E A+ +
Sbjct: 113 KEESEEEDEDDEDDEEDEDEEEESDEEEEPAVPVK 147
Score = 38 (18.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 3 DQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEA 53
D+E+ EE+ E+ D E EA + + A +A +A+ ++ E A
Sbjct: 230 DEEDEDDEEEDEEESED--EKPVKEAPGKRKKEMANKSAPEAKKKKTETPA 278
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 112 (44.5 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 32/104 (30%), Positives = 51/104 (49%)
Query: 51 EEAEKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELES 110
E+ +K QL + K M + E KKE D R+++V N+ Y T +E+++
Sbjct: 332 EDMDKALQLNGK--KLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKN 389
Query: 111 HFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDE 154
F + V ++ NK +G KG AYIEF K + A++E
Sbjct: 390 VFE---NALEVRLVLNK-EGSSKGMAYIEF--KTEAEAEKALEE 427
Score = 53 (23.7 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 2 SDQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLK 57
S+ E E+E+ E+ D E + E++ K EA K + EA+K K
Sbjct: 218 SEDEEDEEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKK 273
Score = 40 (19.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDEAELAAMKAR 45
+EE+ E + E+ + + D+ + +DE E A+ +
Sbjct: 113 KEESEEEDEDDEDDEEDEDEEEESDEEEEPAVPVK 147
Score = 38 (18.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 3 DQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEA 53
D+E+ EE+ E+ D E EA + + A +A +A+ ++ E A
Sbjct: 230 DEEDEDDEEEDEEESED--EKPVKEAPGKRKKEMANKSAPEAKKKKTETPA 278
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 104 (41.7 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA-M 152
+YVGN++Y +LE F G+V ++ ++ G +GF ++E Q A+A +
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGL 64
Query: 153 DESLFRGRQIKVNPKR 168
+ GR + VN R
Sbjct: 65 NGKEMDGRNLMVNEAR 80
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 112 (44.5 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
++VG +++ + LE HF G ++ V ++ ++ +GF +I F D + AM AM
Sbjct: 8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67
Query: 153 DESLFRGRQIKVN 165
+ GRQI+V+
Sbjct: 68 NGESLDGRQIRVD 80
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 119 (46.9 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+A LR ++VG +D+ T E L S+F G V I+ +K +GF +++F D + V
Sbjct: 51 QAALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 110
Query: 148 TAMAMDESLFRGRQIKVNPKR 168
T +A GR I +PK+
Sbjct: 111 TVLASRPHTLDGRNI--DPKQ 129
>ASPGD|ASPL0000038712 [details] [associations]
symbol:AN3427 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF
EMBL:AACD01000056 RefSeq:XP_661031.1 ProteinModelPortal:Q5B7Q3
STRING:Q5B7Q3 EnsemblFungi:CADANIAT00009611 GeneID:2874554
KEGG:ani:AN3427.2 Uniprot:Q5B7Q3
Length = 357
Score = 121 (47.7 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTA 149
+ ++VGN+ + T E LE HF CG+V V + + G KG+A++EF D ++ +TA
Sbjct: 180 KRLFVGNLSFDTTKEFLEEHFSQCGTVTNVHVATFQDSGKCKGYAWVEFEDLEAAKTA 237
>FB|FBgn0032620 [details] [associations]
symbol:CG12288 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005875 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 HSSP:P52298
EMBL:AY118842 ProteinModelPortal:Q8MSG1 SMR:Q8MSG1 STRING:Q8MSG1
PaxDb:Q8MSG1 PRIDE:Q8MSG1 FlyBase:FBgn0032620 InParanoid:Q8MSG1
OrthoDB:EOG40P2PK ArrayExpress:Q8MSG1 Bgee:Q8MSG1 Uniprot:Q8MSG1
Length = 435
Score = 118 (46.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 29/87 (33%), Positives = 48/87 (55%)
Query: 87 KEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSV 146
K+A R+I+VG++ Y AT E+L F CG ++ + L + G KG AY+ F D+V
Sbjct: 256 KDAK-RTIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKGC-KGVAYVCFQKPDAV 313
Query: 147 QTAMAMDESLFRGRQIKVNPKRTNRPG 173
A+ ++++L R I V + + G
Sbjct: 314 GLALELNQTLLDDRPINVERYQVKKLG 340
Score = 37 (18.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 6/21 (28%), Positives = 17/21 (80%)
Query: 43 KARVREMEEEAEKLKQLQSEV 63
K + ++ +++A+KLK+ Q+++
Sbjct: 67 KIKKKKAKKQAQKLKKQQNKL 87
>ASPGD|ASPL0000069068 [details] [associations]
symbol:AN7350 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BN001304 GO:GO:0003743 ProteinModelPortal:C8VCK1
EnsemblFungi:CADANIAT00000083 HOGENOM:HOG000167806 OMA:EPPMERP
Uniprot:C8VCK1
Length = 497
Score = 122 (48.0 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 95 YVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDE 154
++GN+ + AT+ ++ F CG N V I+ +K PKGF Y+EF D ++ A+ +
Sbjct: 85 HIGNLSFDATSGDISDLFADCGVTN-VRIVEDKLTKAPKGFGYVEFETVDGLKKALDLSG 143
Query: 155 SLFRGRQIKVN 165
+ +GR I+V+
Sbjct: 144 ATLQGRSIRVS 154
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 120 (47.3 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 90 DLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTA 149
D R ++VG + + T +EL HF G + + + + G +GFA+I F + +++
Sbjct: 54 DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKV 113
Query: 150 MAMDESLFRGRQIKVNPKR 168
A DE + + KV+PK+
Sbjct: 114 SAADEHIINSK--KVDPKK 130
>UNIPROTKB|Q32P59 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 HOGENOM:HOG000276232
EMBL:BC108247 IPI:IPI00713880 RefSeq:NP_001032562.1
UniGene:Bt.56679 ProteinModelPortal:Q32P59 STRING:Q32P59
Ensembl:ENSBTAT00000043035 GeneID:613614 KEGG:bta:613614 CTD:81892
eggNOG:NOG291073 GeneTree:ENSGT00390000008624 HOVERGEN:HBG079935
InParanoid:Q32P59 OMA:SNELREH OrthoDB:EOG4Z62Q4 NextBio:20898668
Uniprot:Q32P59
Length = 111
Score = 102 (41.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 95 YVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDE 154
+V + + A + EL HF G V + T+ +K G KG +I F+ ++ + A+ +
Sbjct: 22 FVRKIPWTAASSELREHFAQFGHVRKCTVPFDKETGFHKGMGWIHFSSEEELHNALQQEN 81
Query: 155 SLFRGRQIKVNPKR 168
+ G ++ V P+R
Sbjct: 82 HVIDGVKLHVQPQR 95
>POMBASE|SPAC3G6.04 [details] [associations]
symbol:rnp24 "RNA-binding protein Rnp24" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC3G6.04 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 HOGENOM:HOG000193653
OrthoDB:EOG47DDRF EMBL:U24430 EMBL:AB027862 PIR:T38723
RefSeq:NP_594970.1 ProteinModelPortal:Q09100 STRING:Q09100
EnsemblFungi:SPAC3G6.04.1 GeneID:2542965 KEGG:spo:SPAC3G6.04
NextBio:20804000 Uniprot:Q09100
Length = 369
Score = 120 (47.3 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 83 IEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAD 142
I+ K+ ++VGN+D+ T +L+ HF G + RV ++ + G KGF +++F D
Sbjct: 219 IQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
Query: 143 KDSVQTAMAMDESLFR 158
D+ AM + + +R
Sbjct: 279 IDTCMKAMELGHNSWR 294
>UNIPROTKB|F5GY08 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01012450 ProteinModelPortal:F5GY08 SMR:F5GY08
Ensembl:ENST00000544582 ArrayExpress:F5GY08 Bgee:F5GY08
Uniprot:F5GY08
Length = 220
Score = 116 (45.9 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
EAD R+++VGN++ T E L FH G V +V I +K DG PK FA++ F + SV
Sbjct: 7 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVP 64
Query: 148 TAMAMDESL-FRGRQIKV 164
AM + + GR IK+
Sbjct: 65 YAMNLLNGIKLYGRPIKI 82
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 115 (45.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+ S+ V N+ Y + + L F G V V I +++ +GFA++ F DK + AM
Sbjct: 13 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72
Query: 151 -AMDESLFRGRQIKVNPKRTNRP 172
AMD ++ GR+++V R RP
Sbjct: 73 DAMDGAVLDGRELRVQMARYGRP 95
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 101 (40.6 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/71 (39%), Positives = 38/71 (53%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA- 151
S+Y+ N+D + E L F G V R ++L F G +GFA+IEF DS AM
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGFAFIEFESADSAGRAMLH 76
Query: 152 MDESLFRGRQI 162
MD L G++I
Sbjct: 77 MDGRLI-GQKI 86
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 121 (47.7 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
++E D R+++V + T+ EL F G V I+ +K G KG AY+EF +DS
Sbjct: 234 EEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDS 293
Query: 146 VQTAMAMDESLFRGRQIKV 164
VQ A+A+ G + V
Sbjct: 294 VQAAIALSGKRLLGLPVIV 312
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 115 (45.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+ S+ V N+ Y + + L F G V V I +++ +GFA++ F DK + AM
Sbjct: 13 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72
Query: 151 -AMDESLFRGRQIKVNPKRTNRP 172
AMD ++ GR+++V R RP
Sbjct: 73 DAMDGAVLDGRELRVQMARYGRP 95
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 115 (45.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+ S+ V N+ Y + + L F G V V I +++ +GFA++ F DK + AM
Sbjct: 13 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72
Query: 151 -AMDESLFRGRQIKVNPKRTNRP 172
AMD ++ GR+++V R RP
Sbjct: 73 DAMDGAVLDGRELRVQMARYGRP 95
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 115 (45.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+ S+ V N+ Y + + L F G V V I +++ +GFA++ F DK + AM
Sbjct: 13 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72
Query: 151 -AMDESLFRGRQIKVNPKRTNRP 172
AMD ++ GR+++V R RP
Sbjct: 73 DAMDGAVLDGRELRVQMARYGRP 95
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 115 (45.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+ S+ V N+ Y + + L F G V V I +++ +GFA++ F DK + AM
Sbjct: 13 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72
Query: 151 -AMDESLFRGRQIKVNPKRTNRP 172
AMD ++ GR+++V R RP
Sbjct: 73 DAMDGAVLDGRELRVQMARYGRP 95
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 115 (45.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+ S+ V N+ Y + + L F G V V I +++ +GFA++ F DK + AM
Sbjct: 13 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72
Query: 151 -AMDESLFRGRQIKVNPKRTNRP 172
AMD ++ GR+++V R RP
Sbjct: 73 DAMDGAVLDGRELRVQMARYGRP 95
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 115 (45.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+ S+ V N+ Y + + L F G V V I +++ +GFA++ F DK + AM
Sbjct: 13 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72
Query: 151 -AMDESLFRGRQIKVNPKRTNRP 172
AMD ++ GR+++V R RP
Sbjct: 73 DAMDGAVLDGRELRVQMARYGRP 95
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 115 (45.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+ S+ V N+ Y + + L F G V V I +++ +GFA++ F DK + AM
Sbjct: 13 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72
Query: 151 -AMDESLFRGRQIKVNPKRTNRP 172
AMD ++ GR+++V R RP
Sbjct: 73 DAMDGAVLDGRELRVQMARYGRP 95
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 115 (45.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+ S+ V N+ Y + + L F G V V I +++ +GFA++ F DK + AM
Sbjct: 13 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72
Query: 151 -AMDESLFRGRQIKVNPKRTNRP 172
AMD ++ GR+++V R RP
Sbjct: 73 DAMDGAVLDGRELRVQMARYGRP 95
>FB|FBgn0035063 [details] [associations]
symbol:Eap "Exu-associated protein" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE013599
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P52298
KO:K14789 ChiTaRS:RPL22 FlyBase:FBgn0035063 EMBL:BT030793
RefSeq:NP_523855.1 UniGene:Dm.30940 SMR:Q9W108 IntAct:Q9W108
MINT:MINT-1546135 EnsemblMetazoa:FBtr0072374 GeneID:37964
KEGG:dme:Dmel_CG3594 UCSC:CG3594-RA CTD:37964 InParanoid:Q9W108
OMA:IRIPKKR GenomeRNAi:37964 NextBio:806275 Uniprot:Q9W108
Length = 250
Score = 116 (45.9 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 41/156 (26%), Positives = 68/156 (43%)
Query: 13 ENFENGDHIENGD----MEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMS 68
E FE G +++ D + + SK DEA+ ++EA S +++ S
Sbjct: 42 EIFE-GTYVDKEDGRNPSDPEDSKSEDEAK----------SDDEAAAEGSAASGAEEEES 90
Query: 69 MGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKF 128
+ + + +YV N+++ T ++LE HF G+V + I K
Sbjct: 91 AENGQITSDQLSSLLRGASKTNRHVLYVTNLNFETTKDDLELHFSAAGTVKSIRIP-KKR 149
Query: 129 DGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKV 164
G GFA++E AD S Q A + + +GR IKV
Sbjct: 150 RG---GFAFVEMADLSSFQNAFQLHNTELQGRNIKV 182
>CGD|CAL0004922 [details] [associations]
symbol:orf19.6766 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 119 (46.9 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
R ++VGN+ + T + LE HF CG + ++ + + G KGFA+I+F D++ TA+
Sbjct: 215 RILFVGNLSFDTTEDLLEEHFRHCGEIVKIRMATFQDTGKCKGFAFIDFKDEEGATTAL 273
>UNIPROTKB|Q5ADS5 [details] [associations]
symbol:NOP13 "Putative uncharacterized protein NOP13"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 119 (46.9 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
R ++VGN+ + T + LE HF CG + ++ + + G KGFA+I+F D++ TA+
Sbjct: 215 RILFVGNLSFDTTEDLLEEHFRHCGEIVKIRMATFQDTGKCKGFAFIDFKDEEGATTAL 273
>TAIR|locus:2135892 [details] [associations]
symbol:EMB140 "EMBRYO DEFECTIVE 140" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=NAS] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 SMART:SM00386 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR008669 Pfam:PF05391
OMA:SQAVMKM IPI:IPI00526863 RefSeq:NP_194158.3 UniGene:At.32361
ProteinModelPortal:F4JQ75 SMR:F4JQ75 PRIDE:F4JQ75
EnsemblPlants:AT4G24270.2 GeneID:828529 KEGG:ath:AT4G24270
PhylomeDB:F4JQ75 Uniprot:F4JQ75
Length = 817
Score = 122 (48.0 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 83 IEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAD 142
++ K D + ++ N+ A E++ F G V+ + IL +K G P+G AY +F D
Sbjct: 642 LKPKVYRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVD 701
Query: 143 KDSVQTAMAMDESLFRGRQIKV---NPKR 168
+ + A+A + +F G++I + NPK+
Sbjct: 702 DEHLAAAIAKNRKMFFGKKISIARSNPKK 730
>UNIPROTKB|E2QWQ0 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 CTD:10179 KO:K13188 OMA:DRHYSRE
EMBL:AAEX03003476 EMBL:AAEX03003477 RefSeq:XP_853905.2
Ensembl:ENSCAFT00000021445 GeneID:611169 KEGG:cfa:611169
Uniprot:E2QWQ0
Length = 262
Score = 116 (45.9 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 87 KEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSV 146
+EAD R+++VGN++ T E L FH G V +V I +K DG PK FA++ F + SV
Sbjct: 6 EEAD-RTLFVGNLETKVTEELLFELFHQAGPVVKVKIPKDK-DGKPKQFAFVNFKHEVSV 63
Query: 147 QTAMAMDESL-FRGRQIKV 164
AM + + GR IK+
Sbjct: 64 PYAMNLLNGIKLFGRPIKI 82
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 122 (48.0 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 37/180 (20%), Positives = 82/180 (45%)
Query: 1 MSDQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEA-EKLKQL 59
+ D + ++++ N + ++ + ++ D+ K +D + R++E E E EK
Sbjct: 250 LKDTDIGLVNDDANSDEKENEKRRNLAQDE-KVSDLDWFKQRRVRIKESEAETREKSSSY 308
Query: 60 QSEVDKQMSMGXXXXXXXXXXXXIEEK----KEADLRSIYVGNVDYGATAEELESHFHGC 115
+E ++ + +E+ K +++ N+ Y + E+ F
Sbjct: 309 ATEQNESLDTKKEEQPERAVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPF 368
Query: 116 GSVNRVTILCNKFDGHPKGFAYIEFAD-KDSVQTAMAMDESLFRGRQIKVNP---KRTNR 171
G + V + + G KGFAY+ F D K++V + +D+ +F+GR + + P K+++R
Sbjct: 369 GELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHILPGEEKKSHR 428
>POMBASE|SPBC365.04c [details] [associations]
symbol:SPBC365.04c "RNA-binding protein, involved in
ribosome biogenesis (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=ISS;IDA]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC365.04c GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0042254 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000001011 KO:K14789 OMA:GPRFILF OrthoDB:EOG4JHGRC
PIR:T40311 RefSeq:NP_596033.1 ProteinModelPortal:Q9Y7Y3
STRING:Q9Y7Y3 PRIDE:Q9Y7Y3 EnsemblFungi:SPBC365.04c.1
GeneID:2540924 KEGG:spo:SPBC365.04c NextBio:20802039 Uniprot:Q9Y7Y3
Length = 233
Score = 115 (45.5 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 36/142 (25%), Positives = 63/142 (44%)
Query: 26 MEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEE 85
+E + K + E KA + +E + KQL DK ++
Sbjct: 27 LEEHEKKVQQKNEELEKKAADKISRDELPE-KQLAQSNDKDKH-SVSNPPHKTLKSKRQK 84
Query: 86 KKEADLRSI-YVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK- 143
K D + I +VGN+ ++ E L+ HF G V V I +K G KG+A++EF +
Sbjct: 85 GKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPK 144
Query: 144 -DSVQTAMAMDESLFRGRQIKV 164
D + A+ ++++ R+I +
Sbjct: 145 TDVISKALKFHHTIYKERKINI 166
>UNIPROTKB|Q9Y580 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 EMBL:CH471065 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 CTD:10179 eggNOG:NOG273605
HOGENOM:HOG000059553 HOVERGEN:HBG009324 KO:K13188 OrthoDB:EOG4W0XDN
EMBL:AF156098 EMBL:AK002015 EMBL:AK312619 EMBL:BC034381
IPI:IPI00001134 RefSeq:NP_057174.1 UniGene:Hs.7527
ProteinModelPortal:Q9Y580 SMR:Q9Y580 DIP:DIP-48833N IntAct:Q9Y580
MINT:MINT-1453692 STRING:Q9Y580 PhosphoSite:Q9Y580 DMDM:9978697
PRIDE:Q9Y580 DNASU:10179 Ensembl:ENST00000540163 GeneID:10179
KEGG:hsa:10179 UCSC:uc001pov.3 GeneCards:GC11P114305 HGNC:HGNC:9904
HPA:HPA013993 MIM:612413 neXtProt:NX_Q9Y580 PharmGKB:PA34269
PhylomeDB:Q9Y580 GenomeRNAi:10179 NextBio:38534 ArrayExpress:Q9Y580
Bgee:Q9Y580 CleanEx:HS_RBM7 Genevestigator:Q9Y580
GermOnline:ENSG00000076053 Uniprot:Q9Y580
Length = 266
Score = 116 (45.9 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
EAD R+++VGN++ T E L FH G V +V I +K DG PK FA++ F + SV
Sbjct: 7 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVP 64
Query: 148 TAMAMDESL-FRGRQIKV 164
AM + + GR IK+
Sbjct: 65 YAMNLLNGIKLYGRPIKI 82
>UNIPROTKB|J3KPD3 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471065 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:DRHYSRE UniGene:Hs.7527 HGNC:HGNC:9904 EMBL:AP002373
ProteinModelPortal:J3KPD3 Ensembl:ENST00000375490 Uniprot:J3KPD3
Length = 267
Score = 116 (45.9 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
EAD R+++VGN++ T E L FH G V +V I +K DG PK FA++ F + SV
Sbjct: 7 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVP 64
Query: 148 TAMAMDESL-FRGRQIKV 164
AM + + GR IK+
Sbjct: 65 YAMNLLNGIKLYGRPIKI 82
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 121 (47.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK 143
E +E+D R+++V + ++L F G+V V ++ +K KG Y+EF+ K
Sbjct: 258 EPDEESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQK 317
Query: 144 DSVQTAMAMDESLFRGRQIKVN 165
+ V A+A+ S+ G+QI V+
Sbjct: 318 EMVDKAIALSGSVLDGQQILVH 339
>UNIPROTKB|G4N5M5 [details] [associations]
symbol:MGG_05264 "Translation initiation factor 4B"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CM001233 Gene3D:3.30.70.330 GO:GO:0003743
KO:K03258 RefSeq:XP_003712822.1 EnsemblFungi:MGG_05264T0
GeneID:2675531 KEGG:mgr:MGG_05264 Uniprot:G4N5M5
Length = 563
Score = 120 (47.3 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 95 YVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDE 154
++GN+ Y AT E + F C V+ V I+ ++ PKGF Y EFA + +Q A+ D
Sbjct: 85 HLGNLSYDATNETVTDFFAACEVVS-VRIVEDREQQRPKGFGYAEFATAEGLQKALNFDG 143
Query: 155 SLFRGRQIKV 164
F+GR I++
Sbjct: 144 DSFQGRVIRI 153
>MGI|MGI:1858230 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T cells 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
MGI:MGI:1858230 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 HOGENOM:HOG000063708 HOVERGEN:HBG053888
OMA:SQAVMKM OrthoDB:EOG4RXXZG ChiTaRS:SART3 EMBL:AF172722
EMBL:AK053828 EMBL:AK129067 EMBL:AK086398 EMBL:BC036350
EMBL:BC057156 IPI:IPI00458854 IPI:IPI00471258 RefSeq:NP_058622.1
UniGene:Mm.29594 ProteinModelPortal:Q9JLI8 SMR:Q9JLI8 STRING:Q9JLI8
PhosphoSite:Q9JLI8 PaxDb:Q9JLI8 PRIDE:Q9JLI8
Ensembl:ENSMUST00000019118 GeneID:53890 KEGG:mmu:53890
UCSC:uc008yym.1 InParanoid:Q9JLI8 NextBio:310779 Bgee:Q9JLI8
Genevestigator:Q9JLI8 GermOnline:ENSMUSG00000018974 Uniprot:Q9JLI8
Length = 962
Score = 122 (48.0 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 40/160 (25%), Positives = 67/160 (41%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKL-KQLQSEVDKQMSM 69
E+E+ EN E G+ E +Q E + M+EE E K L +V
Sbjct: 626 EDEDEEN----EWGEEEEEQPSKRRRTENSLASGEASAMKEETELSGKCLTIDVGPPSKQ 681
Query: 70 GXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESH--FHGCGSVNRVT-ILCN 126
+ D +++V N+ Y E++ F CG V ++ I N
Sbjct: 682 KEKAASLKRDMPKVAHDSSKDSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSN 741
Query: 127 KFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNP 166
+ G +G+ Y+EF ++ S Q A+ +D + GR + V+P
Sbjct: 742 R--GDFRGYCYVEFGEEKSAQQALELDRKIVEGRPMFVSP 779
>UNIPROTKB|E2RSQ3 [details] [associations]
symbol:SLIRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
CTD:81892 GeneTree:ENSGT00390000008624 OMA:SNELREH
EMBL:AAEX03005881 RefSeq:XP_547932.2 ProteinModelPortal:E2RSQ3
Ensembl:ENSCAFT00000027289 GeneID:490810 KEGG:cfa:490810
NextBio:20863760 Uniprot:E2RSQ3
Length = 111
Score = 99 (39.9 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 18/77 (23%), Positives = 40/77 (51%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
R +V + + A + EL HF G V + T+ +K G +G ++ F+ ++ +Q A+
Sbjct: 19 RVAFVRKIPWTAASSELREHFAQFGHVRKCTVPFDKETGFHRGMGWVHFSSEEDLQNALQ 78
Query: 152 MDESLFRGRQIKVNPKR 168
++ + G ++ + +R
Sbjct: 79 QEKHIIDGVKLHIQARR 95
>ZFIN|ZDB-GENE-040801-132 [details] [associations]
symbol:srek1 "splicing regulatory
glutamine/lysine-rich protein 1" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040801-132 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 OrthoDB:EOG4K3KWS HOGENOM:HOG000121772
EMBL:BX950207 EMBL:CU207241 EMBL:CU467961 IPI:IPI00497438
UniGene:Dr.81675 Ensembl:ENSDART00000134937 HOVERGEN:HBG097523
InParanoid:A2BIN4 Uniprot:A2BIN4
Length = 515
Score = 119 (46.9 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 31/109 (28%), Positives = 56/109 (51%)
Query: 59 LQSEVDKQMSMGXXXXXXXXXXXXIEEKKEADLR-SIYVGNVD-YGATAEELESHFHGCG 116
L+S +D ++ ++ K ++R ++YVGN++ TA++L F G
Sbjct: 137 LKSSLDTSVATLSAVSAQPPLMGNVDPSKVDEIRRTVYVGNLNSQSTTADQLLKFFKQVG 196
Query: 117 SVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVN 165
V V + + + P FA++EFAD+DSV A+ + +F R +K+N
Sbjct: 197 DVKFVRMAGD--ETQPTRFAFVEFADQDSVARALTYNGVMFGDRPLKIN 243
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 107 (42.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
++VG +++ + LE HF G ++ V ++ ++ +GF +I F + + AM AM
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 153 DESLFRGRQIKVN 165
+ GRQI+V+
Sbjct: 68 NGESLDGRQIRVD 80
>UNIPROTKB|Q3MHY8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9913 "Bos
taurus" [GO:0007126 "meiosis" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
EMBL:BC104518 IPI:IPI00690650 RefSeq:NP_001029659.1
UniGene:Bt.56272 ProteinModelPortal:Q3MHY8 SMR:Q3MHY8 PRIDE:Q3MHY8
Ensembl:ENSBTAT00000010804 GeneID:515307 KEGG:bta:515307 CTD:10179
eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
InParanoid:Q3MHY8 KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN
NextBio:20871760 Uniprot:Q3MHY8
Length = 262
Score = 115 (45.5 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
EAD R+++VGN++ T E L FH G V +V I +K DG PK FA++ F + SV
Sbjct: 7 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVP 64
Query: 148 TAMAMDESL-FRGRQIKV 164
AM + + GR IK+
Sbjct: 65 YAMNLLNGIKLFGRPIKI 82
>UNIPROTKB|F1NUL7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00819201 Ensembl:ENSGALT00000038897
ArrayExpress:F1NUL7 Uniprot:F1NUL7
Length = 857
Score = 120 (47.3 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 93 SIYVGNVDYGATAEE--LESHFHGCGSVNRVT-ILCNKFDGHPKGFAYIEFADKDSVQTA 149
+++V N+ Y T E L+ F CG V++V + NK G +G+ Y+EF D+ S A
Sbjct: 599 TVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNK--GTFRGYCYVEFKDEKSALQA 656
Query: 150 MAMDESLFRGRQIKVNP 166
+ MD + GR + V+P
Sbjct: 657 LGMDRKVVEGRPMFVSP 673
Score = 36 (17.7 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 36 EAELAAMKARVREMEEEAEKLKQLQSEVDKQ 66
+A + + R+ + E+ KL++ S+++K+
Sbjct: 502 DAAVQKTENRLARVNEQRAKLRRKPSKLNKE 532
>UNIPROTKB|F1SJV7 [details] [associations]
symbol:LOC100522453 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 KO:K13188 OMA:DRHYSRE EMBL:CU856090
RefSeq:XP_003129925.1 Ensembl:ENSSSCT00000032163 GeneID:100522453
KEGG:ssc:100522453 Uniprot:F1SJV7
Length = 265
Score = 115 (45.5 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
EAD R+++VGN++ T E L FH G V +V I +K DG PK FA++ F + SV
Sbjct: 7 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVP 64
Query: 148 TAMAMDESL-FRGRQIKV 164
AM + + GR IK+
Sbjct: 65 YAMNLLNGIKLFGRPIKI 82
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 107 (42.7 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
++VG +++ + LE HF G ++ V ++ ++ +GF +I F + + AM AM
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 153 DESLFRGRQIKVN 165
+ GRQI+V+
Sbjct: 68 NGESLDGRQIRVD 80
>TAIR|locus:2024842 [details] [associations]
symbol:CID8 "CTC-interacting domain 8" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005515
"protein binding" evidence=IPI] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AC024260 HSSP:P11940 EMBL:BT014885 IPI:IPI00524059 PIR:F96576
RefSeq:NP_175769.1 UniGene:At.37370 ProteinModelPortal:Q9C8M0
SMR:Q9C8M0 STRING:Q9C8M0 EnsemblPlants:AT1G53650.1 GeneID:841802
KEGG:ath:AT1G53650 TAIR:At1g53650 HOGENOM:HOG000006309
InParanoid:Q9C8M0 OMA:ITEMATD PhylomeDB:Q9C8M0
ProtClustDB:CLSN2682126 Genevestigator:Q9C8M0 Uniprot:Q9C8M0
Length = 314
Score = 116 (45.9 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHG-CGSVNRVTILCNKFDGHPKGFAYIEFAD 142
E+++E R+IY NVD AT +++ + F CG V R+ +L ++ H A++EFA
Sbjct: 217 EDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQV--HSTRIAFVEFAM 274
Query: 143 KDSVQTAMAMDESLFRGRQIKVNPKRT 169
+S A+ + + I+V+P +T
Sbjct: 275 AESAVAALNCSGIVLGSQPIRVSPSKT 301
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 106 (42.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
++VG +++ + LE HF G ++ V ++ ++ +GF +I F + + AM AM
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 153 DESLFRGRQIKVN 165
+ GRQI+V+
Sbjct: 68 NGESLDGRQIRVD 80
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 98 (39.6 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 89 ADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQT 148
+D ++VG + + + LE F G ++ V ++ ++ +GF ++ F + D +
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 149 AM-AMDESLFRGRQIKVN-PKR 168
AM AM+ GRQI+V+ P R
Sbjct: 63 AMMAMNGKSVDGRQIRVDQPLR 84
>UNIPROTKB|Q9GZT3 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 HOGENOM:HOG000276232
CTD:81892 eggNOG:NOG291073 HOVERGEN:HBG079935 OMA:SNELREH
OrthoDB:EOG4Z62Q4 EMBL:AY860853 EMBL:AJ272055 EMBL:AF253980
EMBL:AF271779 EMBL:BC017895 IPI:IPI00009922 RefSeq:NP_001254792.1
RefSeq:NP_001254793.1 RefSeq:NP_112487.1 UniGene:Hs.655105
ProteinModelPortal:Q9GZT3 SMR:Q9GZT3 IntAct:Q9GZT3 STRING:Q9GZT3
PhosphoSite:Q9GZT3 DMDM:74762723 PaxDb:Q9GZT3 PeptideAtlas:Q9GZT3
PRIDE:Q9GZT3 DNASU:81892 Ensembl:ENST00000557342 GeneID:81892
KEGG:hsa:81892 UCSC:uc001xue.4 GeneCards:GC14P078175
HGNC:HGNC:20495 HPA:HPA020291 MIM:610211 neXtProt:NX_Q9GZT3
PharmGKB:PA134892132 InParanoid:Q9GZT3 PhylomeDB:Q9GZT3
ChiTaRS:SLIRP GenomeRNAi:81892 NextBio:72246 ArrayExpress:Q9GZT3
Bgee:Q9GZT3 CleanEx:HS_C14orf156 Genevestigator:Q9GZT3
GermOnline:ENSG00000119705 Uniprot:Q9GZT3
Length = 109
Score = 98 (39.6 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 18/81 (22%), Positives = 43/81 (53%)
Query: 95 YVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDE 154
+V + + A + +L+ HF G V R + +K G +G +++F+ ++ ++ A+ +
Sbjct: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
Query: 155 SLFRGRQIKVNPKRTNRPGIS 175
+ G +++V+ +R P S
Sbjct: 82 HIIDGVKVQVHTRRPKLPQTS 102
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 106 (42.4 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 23/83 (27%), Positives = 41/83 (49%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
K E D +++G + + T ++L+ +F G V T+ + G +GF ++ F + +S
Sbjct: 72 KNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 131
Query: 146 VQTAMAMDESLFRGRQIKVNPKR 168
V M E G+ I +PKR
Sbjct: 132 VDKVMDQKEHKLNGKVI--DPKR 152
>UNIPROTKB|G4MTM5 [details] [associations]
symbol:MGG_12370 "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0043581 EMBL:CM001232
KO:K14838 RefSeq:XP_003715390.1 ProteinModelPortal:G4MTM5
EnsemblFungi:MGG_12370T0 GeneID:2683169 KEGG:mgr:MGG_12370
Uniprot:G4MTM5
Length = 378
Score = 116 (45.9 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ-TAM 150
R IY+G++ YG E+ + G++ + + NK G KG+A++EF D + A
Sbjct: 168 RVIYIGHIPYGFFEHEIRQYLSQFGTITNLRLSRNKKTGASKGYAFVEFQDASTAAIVAK 227
Query: 151 AMDESLFRGRQIKV 164
MD L GR +KV
Sbjct: 228 TMDAYLLFGRILKV 241
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 97 (39.2 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 91 LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+ +++G + + T + L F G++ ++ ++ +GF ++ FA + AM
Sbjct: 1 MAKLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAM 60
Query: 151 -AMDESLFRGRQIKVNPKRTNRP 172
AM+ F GR I+V+ K + RP
Sbjct: 61 GAMNNQEFDGRIIRVD-KASERP 82
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 97 (39.2 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 89 ADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQT 148
+D ++VG + + + LE F G ++ V ++ ++ +GF ++ F + D +
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 149 AM-AMDESLFRGRQIKVN 165
AM AM+ GRQI+V+
Sbjct: 63 AMMAMNGKSVDGRQIRVD 80
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 106 (42.4 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
++VG +++ + LE HF G ++ V ++ ++ +GF +I F + + AM AM
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 153 DESLFRGRQIKVN 165
+ GRQI+V+
Sbjct: 68 NGESLDGRQIRVD 80
>DICTYBASE|DDB_G0289941 [details] [associations]
symbol:DDB_G0289941 "Nucleolar protein 12"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0289941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000149 eggNOG:COG0724
KO:K14837 RefSeq:XP_635997.1 ProteinModelPortal:Q54GS2
EnsemblProtists:DDB0188659 GeneID:8627412 KEGG:ddi:DDB_G0289941
InParanoid:Q54GS2 OMA:REIRIFP ProtClustDB:CLSZ2731818
Uniprot:Q54GS2
Length = 481
Score = 117 (46.2 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 87 KEADLRSIYVGNVDYGATAEELESHFHGC-GSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
K +D ++I++GN+ Y EEL F G V V I+ + KGF Y+ F+ ++
Sbjct: 357 KASDAKTIFIGNIPYETEEEELFLIFDKTFGDVVSVRIIRDSHTNIGKGFGYVNFSTDET 416
Query: 146 VQTAMAMDESLFRGRQIKVNPKRTN 170
TA+A F R+I++ P + N
Sbjct: 417 ASTAIAQKSIQFGKREIRIFPTKEN 441
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 114 (45.2 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 30/98 (30%), Positives = 51/98 (52%)
Query: 84 EEKKEADL-RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAD 142
EE + ++L R ++V N+ + + ++ F CG+VN V I+ K DG +GFA++ A
Sbjct: 86 EETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK-DGKNRGFAFVTMAS 144
Query: 143 KDSVQTAM-AMDESLFRGRQIKVN-PKRTNRPGISTTN 178
+ Q A+ D GR I V+ +R +P + N
Sbjct: 145 GEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPN 182
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 96 (38.9 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMD 153
+++G + + T ++L+ +F G V T+ + G +GF ++ F + +SV M
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 154 ESLFRGRQIKVNPKR 168
E G+ I +PKR
Sbjct: 61 EHKLNGKVI--DPKR 73
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 96 (38.9 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 84 EEKKEAD-LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAD 142
E KE + LR +++G + + T E L SHF G++ ++ + +GF ++ +A
Sbjct: 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 64
Query: 143 KDSVQTAMAMDESLFRGRQIK 163
+ V AM GR ++
Sbjct: 65 VEEVDAAMNARPHKVDGRVVE 85
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 96 (38.9 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
+++YVGN+ + +E+L+ G V ++ K G +G+ +IE D+D+ +
Sbjct: 3 KTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFMTG 62
Query: 152 MDESLFRGRQIKVNPKR 168
++ GRQ+ V+ R
Sbjct: 63 LNGKEVEGRQLVVSEAR 79
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 96 (38.9 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
+++YVGN+ + +E+L+ G V ++ K G +G+ +IE D+D+ +
Sbjct: 3 KTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFMTG 62
Query: 152 MDESLFRGRQIKVNPKR 168
++ GRQ+ V+ R
Sbjct: 63 LNGKEVEGRQLVVSEAR 79
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 108 (43.1 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 85 EKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKD 144
E + IYVG + + E L S+F G + V ++C++ G +G+ ++ F D +
Sbjct: 45 ENVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAE 104
Query: 145 SVQTAMAMDESLFRGRQIKVN 165
S A + + GR+ K N
Sbjct: 105 SATRACQNPKPVIDGREAKCN 125
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 114 (45.2 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 31/97 (31%), Positives = 47/97 (48%)
Query: 83 IEEKKEADLRS-----IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAY 137
+EE+K+ S +YVGN+ Y T+ EL F G+V V I+ +K +GF +
Sbjct: 102 VEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGF 161
Query: 138 IEFADKDSVQTAMAM-DESLFRGRQIKVNPKRTNRPG 173
+ + + AM M + S GR +KVN R G
Sbjct: 162 VTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGG 198
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 113 (44.8 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
+YVGN+ +G LES F G V ++ ++ G KGF ++ + VQ A+ ++
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 153 DESLFRGRQIKVNPKRTNRP 172
D + GRQI+V+ P
Sbjct: 266 DGADLDGRQIRVSEAEARPP 285
Score = 105 (42.0 bits), Expect = 0.00089, P = 0.00089
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK 143
E+ ADL+ ++VGN+ + + +L F G+V V ++ +K G +GF ++ +
Sbjct: 84 EQSFSADLK-LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142
Query: 144 DSVQTAMAMDESLFRGRQIKVNPKRTN 170
V+ A F G ++ P R N
Sbjct: 143 SEVEAAAQQ----FNGYELDGRPLRVN 165
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 95 (38.5 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
++YV N+ + T +L F G V +VTI+ +K KG A+I F DKDS Q
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQ 65
>ASPGD|ASPL0000007134 [details] [associations]
symbol:AN6256 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACD01000107 EMBL:BN001301
GO:GO:0016853 HOGENOM:HOG000276232 eggNOG:NOG331137
OrthoDB:EOG4TJ03G RefSeq:XP_663860.1 ProteinModelPortal:Q5AZM4
STRING:Q5AZM4 EnsemblFungi:CADANIAT00006735 GeneID:2871037
KEGG:ani:AN6256.2 OMA:TAVWEQE Uniprot:Q5AZM4
Length = 153
Score = 104 (41.7 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 28/84 (33%), Positives = 42/84 (50%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTI----LCNKFDGHPKGFAYIEFADKDSVQT 148
++YVG +D + + L F G V +T+ L N D H +GF Y+EF + +
Sbjct: 10 TVYVGGLDQAVSVQTLAEAFVPFGEVVDITLPKPDLPNSNDNH-RGFGYVEFDSPEDAKE 68
Query: 149 AMA-MDESLFRGRQIKVNPKRTNR 171
A+ MD S GR IKV P + +
Sbjct: 69 AIDNMDGSELYGRTIKVAPAKPQK 92
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 107 (42.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
K E D ++VG + + + ++L+ +F G V TI + G +GF +I F +
Sbjct: 89 KGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSG 148
Query: 146 VQTAMAMDESLFRGRQIKVNPKR 168
V +A E GRQI +PK+
Sbjct: 149 VDKVLAQKEHRLDGRQI--DPKK 169
Score = 41 (19.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 1 MSDQENSFIHEEENFENGDHIENGDMEADQ 30
MSD E ++ N G+ NG + DQ
Sbjct: 27 MSDAEQQYMETSLNGHEGEDDLNGAGQYDQ 56
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 105 (42.0 bits), Expect = 0.00010, P = 0.00010
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
++VG +++ LE HF G ++ V ++ ++ +GF +I F + + AM AM
Sbjct: 8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 153 DESLFRGRQIKVN 165
+ GRQI+V+
Sbjct: 68 NGESLDGRQIRVD 80
>TAIR|locus:2184367 [details] [associations]
symbol:AT5G04600 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006333 "chromatin assembly or disassembly" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0051604
"protein maturation" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162875 eggNOG:NOG244773
HOGENOM:HOG000242795 KO:K14838 HSSP:Q61474 UniGene:At.4932
UniGene:At.65019 EMBL:AF378899 EMBL:AY055787 EMBL:AY063822
EMBL:AY123013 IPI:IPI00541604 PIR:T48456 RefSeq:NP_196080.1
ProteinModelPortal:Q9LZ65 SMR:Q9LZ65 IntAct:Q9LZ65 STRING:Q9LZ65
PaxDb:Q9LZ65 PRIDE:Q9LZ65 EnsemblPlants:AT5G04600.1 GeneID:830337
KEGG:ath:AT5G04600 TAIR:At5g04600 InParanoid:Q9LZ65 OMA:IGHIPHG
PhylomeDB:Q9LZ65 ProtClustDB:CLSN2686415 ArrayExpress:Q9LZ65
Genevestigator:Q9LZ65 Uniprot:Q9LZ65
Length = 222
Score = 110 (43.8 bits), Expect = 0.00011, P = 0.00011
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
+Y+G + +G E+E+ F G+V RV + NK G K F +I+F D + + A AM
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 153 DESLFRGRQIKVN 165
++ L +KV+
Sbjct: 122 NDYLLMEHMLKVH 134
>UNIPROTKB|Q66II8 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0060218 GO:GO:0043484
GO:GO:0000398 eggNOG:COG0724 KO:K11093 InterPro:IPR022023
Pfam:PF12220 CTD:6625 GeneTree:ENSGT00530000063750
OrthoDB:EOG4CJVJ7 HOVERGEN:HBG012300 EMBL:CR760195 EMBL:BC081331
RefSeq:NP_001008126.1 UniGene:Str.26779 ProteinModelPortal:Q66II8
STRING:Q66II8 Ensembl:ENSXETT00000049555 GeneID:493488
KEGG:xtr:493488 Xenbase:XB-GENE-992818 InParanoid:Q66II8
OMA:RHDKYDR Bgee:Q66II8 Uniprot:Q66II8
Length = 471
Score = 115 (45.5 bits), Expect = 0.00011, P = 0.00011
Identities = 32/131 (24%), Positives = 66/131 (50%)
Query: 43 KARVRE--MEEEA-EKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEAD-LRSIYVGN 98
+A RE ME + EK+++ Q +V+ ++ + ++ + D ++++V
Sbjct: 59 RAETREERMERKRREKIERRQQDVENELKIWDPHN---------DQNAQGDAFKTLFVAR 109
Query: 99 VDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA-MDESLF 157
V+Y T +L F G + R+ ++ NK G P+G+A+IE+ + + +A D
Sbjct: 110 VNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 169
Query: 158 RGRQIKVNPKR 168
GR++ V+ +R
Sbjct: 170 DGRRVLVDVER 180
>UNIPROTKB|B5G279 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
Length = 168
Score = 106 (42.4 bits), Expect = 0.00011, P = 0.00011
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 83 IEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAD 142
++EK ++YVGN+ + T E+++ F CG V R+ + +K P GF ++E+
Sbjct: 34 LQEKSLKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYT 93
Query: 143 KDSVQTAM 150
+ + AM
Sbjct: 94 RADAEHAM 101
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
R++YVGN+D T + + + F+ GSV + ++ FDG +A++EF+D A+
Sbjct: 46 RTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI---FDGSNDPYAFVEFSDHGQASQALQ 102
Query: 151 AMDESLFRGRQIKVN 165
M++ L R++KVN
Sbjct: 103 TMNKRLLLDREMKVN 117
>MGI|MGI:2145245 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2145245 GO:GO:0005739
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OMA:EKEQDKD OrthoDB:EOG4K3KWS EMBL:AK033354 EMBL:AK037115
EMBL:AK039311 EMBL:AK044086 EMBL:AK052265 EMBL:BC070460
IPI:IPI00227738 IPI:IPI00379480 RefSeq:NP_766180.1
UniGene:Mm.458176 ProteinModelPortal:Q8BZX4 SMR:Q8BZX4
STRING:Q8BZX4 PhosphoSite:Q8BZX4 PaxDb:Q8BZX4 PRIDE:Q8BZX4
Ensembl:ENSMUST00000074616 GeneID:218543 KEGG:mmu:218543
UCSC:uc007rsh.1 InParanoid:Q8BZX4 NextBio:376337 Bgee:Q8BZX4
CleanEx:MM_SFRS12 Genevestigator:Q8BZX4
GermOnline:ENSMUSG00000032621 Uniprot:Q8BZX4
Length = 494
Score = 115 (45.5 bits), Expect = 0.00012, P = 0.00012
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 92 RSIYVGNVD-YGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
R++YVGN++ TA++L F G V V + + + P FA++EFAD++SV A+
Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGD--ETQPTRFAFVEFADQNSVPRAL 126
Query: 151 AMDESLFRGRQIKVN 165
A + +F R +K+N
Sbjct: 127 AFNGVMFGDRPLKIN 141
>RGD|621696 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:621696 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 KO:K13165 CTD:140890
HOVERGEN:HBG079174 OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759
RefSeq:NP_064477.1 UniGene:Rn.161755 ProteinModelPortal:Q9JKL7
STRING:Q9JKL7 PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763
UCSC:RGD:621696 eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 115 (45.5 bits), Expect = 0.00012, P = 0.00012
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 92 RSIYVGNVD-YGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
R++YVGN++ TA++L F G V V + + + P FA++EFAD++SV A+
Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGD--ETQPTRFAFVEFADQNSVPRAL 126
Query: 151 AMDESLFRGRQIKVN 165
A + +F R +K+N
Sbjct: 127 AFNGVMFGDRPLKIN 141
>UNIPROTKB|Q9JKL7 [details] [associations]
symbol:Srek1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:621696 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003676 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759 RefSeq:NP_064477.1
UniGene:Rn.161755 ProteinModelPortal:Q9JKL7 STRING:Q9JKL7
PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763 UCSC:RGD:621696
eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 115 (45.5 bits), Expect = 0.00012, P = 0.00012
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 92 RSIYVGNVD-YGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
R++YVGN++ TA++L F G V V + + + P FA++EFAD++SV A+
Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGD--ETQPTRFAFVEFADQNSVPRAL 126
Query: 151 AMDESLFRGRQIKVN 165
A + +F R +K+N
Sbjct: 127 AFNGVMFGDRPLKIN 141
>UNIPROTKB|Q8WXA9 [details] [associations]
symbol:SREK1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 eggNOG:NOG277302 KO:K13165
EMBL:AF459094 EMBL:BC047322 EMBL:BC067770 EMBL:BC112343
IPI:IPI00103497 IPI:IPI00375462 RefSeq:NP_001070667.1
RefSeq:NP_001257421.1 RefSeq:NP_631907.1 UniGene:Hs.49367
UniGene:Hs.519347 ProteinModelPortal:Q8WXA9 SMR:Q8WXA9
IntAct:Q8WXA9 STRING:Q8WXA9 PhosphoSite:Q8WXA9 DMDM:37537968
PaxDb:Q8WXA9 PeptideAtlas:Q8WXA9 PRIDE:Q8WXA9
Ensembl:ENST00000334121 Ensembl:ENST00000380918 GeneID:140890
KEGG:hsa:140890 UCSC:uc003jun.3 UCSC:uc003juo.3 CTD:140890
GeneCards:GC05P065435 HGNC:HGNC:17882 HPA:HPA037674 MIM:609268
neXtProt:NX_Q8WXA9 PharmGKB:PA38255 HOVERGEN:HBG079174
InParanoid:Q8WXA9 OMA:EKEQDKD OrthoDB:EOG4K3KWS ChiTaRS:SREK1
GenomeRNAi:140890 NextBio:84548 ArrayExpress:Q8WXA9 Bgee:Q8WXA9
CleanEx:HS_SFRS12 Genevestigator:Q8WXA9 GermOnline:ENSG00000153914
Uniprot:Q8WXA9
Length = 508
Score = 115 (45.5 bits), Expect = 0.00012, P = 0.00012
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 92 RSIYVGNVD-YGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
R++YVGN++ TA++L F G V V + + + P FA++EFAD++SV A+
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGD--ETQPTRFAFVEFADQNSVPRAL 123
Query: 151 AMDESLFRGRQIKVN 165
A + +F R +K+N
Sbjct: 124 AFNGVMFGDRPLKIN 138
>TAIR|locus:2075860 [details] [associations]
symbol:U11/U12-31K "U11/U12-31K" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0051302
"regulation of cell division" evidence=IMP] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
Length = 261
Score = 111 (44.1 bits), Expect = 0.00012, P = 0.00012
Identities = 21/74 (28%), Positives = 43/74 (58%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK-DSVQTAMA 151
++YV N+D+ T ++ + F G V RVT+L ++ +G A++ + + D+ + A +
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARS 117
Query: 152 MDESLFRGRQIKVN 165
MD + GR++ V+
Sbjct: 118 MDAKILNGRKLTVS 131
>UNIPROTKB|E2R749 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
EMBL:AAEX03001478 Ensembl:ENSCAFT00000012107 Uniprot:E2R749
Length = 510
Score = 115 (45.5 bits), Expect = 0.00012, P = 0.00012
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 92 RSIYVGNVD-YGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
R++YVGN++ TA++L F G V V + + + P FA++EFAD++SV A+
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGD--ETQPTRFAFVEFADQNSVPRAL 123
Query: 151 AMDESLFRGRQIKVN 165
A + +F R +K+N
Sbjct: 124 AFNGVMFGDRPLKIN 138
>TAIR|locus:2099931 [details] [associations]
symbol:SCL30 "SC35-like splicing factor 30" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0006979 "response to
oxidative stress" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006979 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
HSSP:P33240 HOGENOM:HOG000276233 eggNOG:NOG312850 KO:K12900
EMBL:AY099649 EMBL:AY086131 EMBL:AY128836 IPI:IPI00522161
RefSeq:NP_567021.1 UniGene:At.10035 ProteinModelPortal:Q8L3X8
SMR:Q8L3X8 IntAct:Q8L3X8 STRING:Q8L3X8 PaxDb:Q8L3X8 PRIDE:Q8L3X8
EnsemblPlants:AT3G55460.1 GeneID:824712 KEGG:ath:AT3G55460
TAIR:At3g55460 InParanoid:Q8L3X8 OMA:YYSPPRR
ProtClustDB:CLSN2717392 ArrayExpress:Q8L3X8 Genevestigator:Q8L3X8
Uniprot:Q8L3X8
Length = 262
Score = 111 (44.1 bits), Expect = 0.00012, P = 0.00012
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK-DSVQTAMA 151
S+ V N+ EEL F G V V I + + G P+GFA++EF D D+ + +
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107
Query: 152 MDESLFRGRQIKV 164
M+ F GR+I V
Sbjct: 108 MNRRSFAGREITV 120
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 104 (41.7 bits), Expect = 0.00012, P = 0.00012
Identities = 28/101 (27%), Positives = 47/101 (46%)
Query: 84 EEKKEAD-LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAD 142
E KE + LR +++G + + T E L SHF G++ ++ + +GF ++ +A
Sbjct: 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 64
Query: 143 KDSVQTAMAMDESLFRGRQIKVNPKR------TNRPGISTT 177
+ V AM GR ++ PKR + RPG T
Sbjct: 65 VEEVDAAMNARPHKVDGRVVE--PKRAVSREDSQRPGAHLT 103
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 94 (38.1 bits), Expect = 0.00013, P = 0.00013
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAD-KDSVQTAMAM 152
IYVGN+ Y +L +F G++ V I+ N G KG+A++ + K +V+ A
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDAH 105
Query: 153 DESLFRGRQIKV 164
+ L +GR + V
Sbjct: 106 GKDL-QGRSLVV 116
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 94 (38.1 bits), Expect = 0.00013, P = 0.00013
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAD-KDSVQTAMAM 152
IYVGN+ Y +L +F G++ V I+ N G KG+A++ + K +V+ A
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDAH 105
Query: 153 DESLFRGRQIKV 164
+ L +GR + V
Sbjct: 106 GKDL-QGRSLVV 116
>MGI|MGI:2447622 [details] [associations]
symbol:Rbm11 "RNA binding motif protein 11" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2447622 GO:GO:0007275
GO:GO:0030154 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH466521
HSSP:P33240 CTD:54033 eggNOG:NOG245318 HOGENOM:HOG000146448
HOVERGEN:HBG061506 EMBL:AC166995 EMBL:BC050779 EMBL:AK039297
IPI:IPI00133149 RefSeq:NP_938044.1 UniGene:Mm.273214
ProteinModelPortal:Q80YT9 SMR:Q80YT9 Ensembl:ENSMUST00000046378
Ensembl:ENSMUST00000114253 GeneID:224344 KEGG:mmu:224344
UCSC:uc007zro.1 GeneTree:ENSGT00690000102191 NextBio:377164
Bgee:Q80YT9 Genevestigator:Q80YT9 Uniprot:Q80YT9
Length = 238
Score = 110 (43.8 bits), Expect = 0.00013, P = 0.00013
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
++EAD R+++VGN++ E L F G + +VT LC DG PK F ++ F +S
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVT-LCKDRDGKPKSFGFVCFKHPES 62
Query: 146 VQTAMAMDESL-FRGRQIKV 164
V A+A+ + GR I V
Sbjct: 63 VSYAIALLNGIRLYGRPINV 82
>RGD|1305195 [details] [associations]
symbol:Rbm11 "RNA binding motif protein 11" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305195 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YRFGSSR OrthoDB:EOG4Q58Q1 GeneTree:ENSGT00690000102191
IPI:IPI00363165 Ensembl:ENSRNOT00000047240 UCSC:RGD:1305195
Uniprot:D3ZQ24
Length = 238
Score = 110 (43.8 bits), Expect = 0.00013, P = 0.00013
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
++EAD R+++VGN++ E L F G + +VT LC DG PK F ++ F +S
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVT-LCKDRDGKPKSFGFVCFKHPES 62
Query: 146 VQTAMAMDESL-FRGRQIKV 164
V A+A+ + GR I V
Sbjct: 63 VSYAIALLNGIRLYGRPINV 82
>UNIPROTKB|E2QRU8 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR022023 Pfam:PF12220 Ensembl:ENSCAFT00000005969
Uniprot:E2QRU8
Length = 386
Score = 113 (44.8 bits), Expect = 0.00014, P = 0.00014
Identities = 33/131 (25%), Positives = 65/131 (49%)
Query: 43 KARVRE--MEEEA-EKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEAD-LRSIYVGN 98
+A RE ME + EK+++ Q EV+ ++ M + + D ++++V
Sbjct: 59 RAETREERMERKRREKIERRQQEVETELKMWDPHN---------DPNAQGDAFKTLFVAR 109
Query: 99 VDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA-MDESLF 157
V+Y T +L F G + R+ ++ +K G P+G+A+IE+ + + +A D
Sbjct: 110 VNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 169
Query: 158 RGRQIKVNPKR 168
GR++ V+ +R
Sbjct: 170 DGRRVLVDVER 180
>ASPGD|ASPL0000043989 [details] [associations]
symbol:AN1517 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:BN001307
Gene3D:3.30.70.330 GO:GO:0003676 ProteinModelPortal:C8VMQ1
EnsemblFungi:CADANIAT00008145 Uniprot:C8VMQ1
Length = 450
Score = 110 (43.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
+++++GN+ Y TAE+L+ G V V I+ + G KG+ Y++F+ + + A+
Sbjct: 271 QTVFIGNLFYDVTAEDLKKQMAKYGVVEGVNIIYDS-RGISKGYGYVQFSSNAAARRAID 329
Query: 151 AMDESLFRGRQIKVNPKRTN 170
AM +F GR++ + +TN
Sbjct: 330 AMHMRIFEGRRVTLYYAQTN 349
Score = 38 (18.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 22 ENGDMEADQSKCTDEAELAAMKARVREMEEEAEKL---KQLQSEVDKQMSMG 70
++ D++ D S+ + A A A ++ EKL ++LQ E + + +G
Sbjct: 225 QDPDLDFDISQIREAAAQEAWAAAEKKQMTHGEKLDMLRRLQYEPKQTVFIG 276
>CGD|CAL0002736 [details] [associations]
symbol:NOP4 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002736 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0035690 EMBL:AACQ01000272
EMBL:AACQ01000273 eggNOG:COG0724 KO:K14573 RefSeq:XP_710406.1
RefSeq:XP_710417.1 ProteinModelPortal:Q59KZ0 STRING:Q59KZ0
GeneID:3647980 GeneID:3647991 KEGG:cal:CaO19.12665
KEGG:cal:CaO19.5198 Uniprot:Q59KZ0
Length = 741
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 39/149 (26%), Positives = 71/149 (47%)
Query: 1 MSDQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQ 60
M D+E + EEE+ E+ + E D ++ + +E E ++ + E ++L ++
Sbjct: 220 MKDEE---VEEEEDNESSEEEEEAD-STNKDENDEEEEDKDDESDNDDASSEFDELNEVN 275
Query: 61 SEVDKQM-SMGXXXXXXXXXXXXIEEKKEADLR---SIYVGNVDYGATAEELESHFHGCG 116
S DK++ S KK+++ + SI+V N+ Y A E L+ HF G
Sbjct: 276 S--DKELDSFDEEMEEPEKKEESSHPKKKSNRQEPFSIFVRNIPYDADTESLKEHFSTFG 333
Query: 117 SVNRVTILCNKFDGHPKGFAYIEFADKDS 145
+V + +K G KG A++ FA +D+
Sbjct: 334 TVKYALPVVDKETGLAKGSAFVAFAKEDA 362
>UNIPROTKB|Q59KZ0 [details] [associations]
symbol:NOP4 "Putative uncharacterized protein NOP4"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0002736 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0035690 EMBL:AACQ01000272 EMBL:AACQ01000273 eggNOG:COG0724
KO:K14573 RefSeq:XP_710406.1 RefSeq:XP_710417.1
ProteinModelPortal:Q59KZ0 STRING:Q59KZ0 GeneID:3647980
GeneID:3647991 KEGG:cal:CaO19.12665 KEGG:cal:CaO19.5198
Uniprot:Q59KZ0
Length = 741
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 39/149 (26%), Positives = 71/149 (47%)
Query: 1 MSDQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQ 60
M D+E + EEE+ E+ + E D ++ + +E E ++ + E ++L ++
Sbjct: 220 MKDEE---VEEEEDNESSEEEEEAD-STNKDENDEEEEDKDDESDNDDASSEFDELNEVN 275
Query: 61 SEVDKQM-SMGXXXXXXXXXXXXIEEKKEADLR---SIYVGNVDYGATAEELESHFHGCG 116
S DK++ S KK+++ + SI+V N+ Y A E L+ HF G
Sbjct: 276 S--DKELDSFDEEMEEPEKKEESSHPKKKSNRQEPFSIFVRNIPYDADTESLKEHFSTFG 333
Query: 117 SVNRVTILCNKFDGHPKGFAYIEFADKDS 145
+V + +K G KG A++ FA +D+
Sbjct: 334 TVKYALPVVDKETGLAKGSAFVAFAKEDA 362
>TAIR|locus:2091657 [details] [associations]
symbol:CID9 "CTC-interacting domain 9" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB028617 HSSP:P11940 HOGENOM:HOG000006309 IPI:IPI00526270
RefSeq:NP_188063.1 UniGene:At.53311 ProteinModelPortal:Q9LRR6
SMR:Q9LRR6 EnsemblPlants:AT3G14450.1 GeneID:820668
KEGG:ath:AT3G14450 TAIR:At3g14450 eggNOG:NOG243629
InParanoid:Q9LRR6 OMA:PRVNRVG PhylomeDB:Q9LRR6
ProtClustDB:CLSN2915572 Genevestigator:Q9LRR6 Uniprot:Q9LRR6
Length = 327
Score = 112 (44.5 bits), Expect = 0.00015, P = 0.00015
Identities = 28/94 (29%), Positives = 51/94 (54%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHG-CGSVNRVTILCNKFDGHPKGFAYIEFAD 142
E+++E R+IY N+D + ++ + F CG V R+ +L ++ H A++EFA
Sbjct: 230 EDEREMCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQL--HSTRIAFVEFAL 287
Query: 143 KDSVQTAMAMDESLFRGRQIKVNPKRTN-RPGIS 175
DS +A+ + + I+V+P +T RP I+
Sbjct: 288 ADSALSALNCSGMVVGSQPIRVSPSKTPVRPRIT 321
>FB|FBgn0022943 [details] [associations]
symbol:Cbp20 "cap binding protein 20" species:7227
"Drosophila melanogaster" [GO:0000339 "RNA cap binding"
evidence=ISS] [GO:0005846 "nuclear cap binding complex"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0045071 "negative
regulation of viral genome replication" evidence=IMP] [GO:0035195
"gene silencing by miRNA" evidence=IMP] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005875 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045071 GO:GO:0030422 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006370 GO:GO:0031053
GO:GO:0000339 PANTHER:PTHR18847 HSSP:P52298 KO:K12883
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AJ238969
EMBL:AY070578 RefSeq:NP_524396.1 UniGene:Dm.2405
ProteinModelPortal:Q9V3L6 SMR:Q9V3L6 IntAct:Q9V3L6 MINT:MINT-987792
STRING:Q9V3L6 PaxDb:Q9V3L6 PRIDE:Q9V3L6 EnsemblMetazoa:FBtr0083551
GeneID:42166 KEGG:dme:Dmel_CG12357 UCSC:CG12357-RA CTD:42166
FlyBase:FBgn0022943 InParanoid:Q9V3L6 OrthoDB:EOG4K0P4N
PhylomeDB:Q9V3L6 GenomeRNAi:42166 NextBio:827474 Bgee:Q9V3L6
Uniprot:Q9V3L6
Length = 154
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK 143
+E+ D ++YVGN+ + T E++ F CG V + + +K+ P GF ++E+ +
Sbjct: 22 QERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVR 81
Query: 144 DSVQTAM 150
+ AM
Sbjct: 82 SEAEAAM 88
>WB|WBGene00004390 [details] [associations]
symbol:rnp-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035
GO:GO:0007281 eggNOG:COG0724 HSSP:P09651 EMBL:FO080149
HOGENOM:HOG000236289 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 PIR:G88499 RefSeq:NP_498565.2
ProteinModelPortal:Q09584 SMR:Q09584 DIP:DIP-25425N IntAct:Q09584
MINT:MINT-229501 STRING:Q09584 PaxDb:Q09584
EnsemblMetazoa:K04G7.10.1 EnsemblMetazoa:K04G7.10.2 GeneID:176002
KEGG:cel:CELE_K04G7.10 UCSC:K04G7.10 CTD:176002 WormBase:K04G7.10
InParanoid:Q09584 OMA:THLLPPN NextBio:890690 Uniprot:Q09584
Length = 332
Score = 112 (44.5 bits), Expect = 0.00015, P = 0.00015
Identities = 22/82 (26%), Positives = 49/82 (59%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
E R+++VG ++Y + +L F G + ++T++ ++ G P+G+A+IE++DK +
Sbjct: 100 EDPYRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHDEA-GKPRGYAFIEYSDKAEMH 158
Query: 148 TAMAMDESL-FRGRQIKVNPKR 168
TA + + G+++ V+ +R
Sbjct: 159 TAYKKADGIKVDGKRLVVDYER 180
>UNIPROTKB|J9P0H2 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104035 KO:K13165 CTD:140890 OMA:EKEQDKD
EMBL:AAEX03001478 RefSeq:XP_544361.3 Ensembl:ENSCAFT00000044884
GeneID:487233 KEGG:cfa:487233 Uniprot:J9P0H2
Length = 626
Score = 115 (45.5 bits), Expect = 0.00016, P = 0.00016
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 92 RSIYVGNVD-YGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
R++YVGN++ TA++L F G V V + + + P FA++EFAD++SV A+
Sbjct: 182 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGD--ETQPTRFAFVEFADQNSVPRAL 239
Query: 151 AMDESLFRGRQIKVN 165
A + +F R +K+N
Sbjct: 240 AFNGVMFGDRPLKIN 254
>UNIPROTKB|J3KMY7 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC008044 CTD:81892
RefSeq:NP_001254792.1 UniGene:Hs.655105 GeneID:81892 KEGG:hsa:81892
HGNC:HGNC:20495 ChiTaRS:SLIRP EMBL:AC008372
ProteinModelPortal:J3KMY7 Ensembl:ENST00000238688 Uniprot:J3KMY7
Length = 107
Score = 93 (37.8 bits), Expect = 0.00016, P = 0.00016
Identities = 19/81 (23%), Positives = 42/81 (51%)
Query: 95 YVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDE 154
+V + + A + +L+ HF G V R + +K G +G +++F+ ++ ++ A+ +
Sbjct: 22 FVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQEN 81
Query: 155 SLFRGRQIKVNPKRTNRPGIS 175
+ G +KV+ +R P S
Sbjct: 82 HIIDG--VKVHTRRPKLPQTS 100
>UNIPROTKB|P08621 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH471177
GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724 PDB:3CW1 PDB:3PGW
PDBsum:3CW1 PDBsum:3PGW KO:K11093 OMA:KKSRGYL InterPro:IPR022023
Pfam:PF12220 CTD:6625 OrthoDB:EOG4CJVJ7 EMBL:X04654 EMBL:X06814
EMBL:X06815 EMBL:X06817 EMBL:X07402 EMBL:X06816 EMBL:X06812
EMBL:X06811 EMBL:X07401 EMBL:X07403 EMBL:M22636 EMBL:M57939
EMBL:M57929 EMBL:M57930 EMBL:M57932 EMBL:M57934 EMBL:M57937
EMBL:M57935 EMBL:AK096783 EMBL:X84841 EMBL:AL117507 EMBL:BC001315
IPI:IPI00219483 IPI:IPI00219484 IPI:IPI00219485 IPI:IPI00290204
PIR:A25707 PIR:S00674 RefSeq:NP_003080.2 UniGene:Hs.467097 PDB:2L5I
PDB:2L5J PDBsum:2L5I PDBsum:2L5J ProteinModelPortal:P08621
SMR:P08621 DIP:DIP-29406N IntAct:P08621 MINT:MINT-5004037
STRING:P08621 PhosphoSite:P08621 DMDM:13635663 PaxDb:P08621
PRIDE:P08621 Ensembl:ENST00000221448 Ensembl:ENST00000401730
Ensembl:ENST00000544278 GeneID:6625 KEGG:hsa:6625 UCSC:uc002pmk.3
GeneCards:GC19P049588 HGNC:HGNC:11150 HPA:CAB001718 MIM:180740
neXtProt:NX_P08621 PharmGKB:PA35992 InParanoid:P08621
ChiTaRS:SNRNP70 EvolutionaryTrace:P08621 GenomeRNAi:6625
NextBio:25805 PMAP-CutDB:P08621 ArrayExpress:P08621 Bgee:P08621
Genevestigator:P08621 GermOnline:ENSG00000104852 Uniprot:P08621
Length = 437
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 33/131 (25%), Positives = 65/131 (49%)
Query: 43 KARVRE--MEEEA-EKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEAD-LRSIYVGN 98
+A RE ME + EK+++ Q EV+ ++ M + + D ++++V
Sbjct: 59 RAETREERMERKRREKIERRQQEVETELKMWDPHN---------DPNAQGDAFKTLFVAR 109
Query: 99 VDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA-MDESLF 157
V+Y T +L F G + R+ ++ +K G P+G+A+IE+ + + +A D
Sbjct: 110 VNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 169
Query: 158 RGRQIKVNPKR 168
GR++ V+ +R
Sbjct: 170 DGRRVLVDVER 180
>UNIPROTKB|Q1RMR2 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 EMBL:BC114762 IPI:IPI00711491
RefSeq:NP_001069514.1 UniGene:Bt.12748 ProteinModelPortal:Q1RMR2
STRING:Q1RMR2 PRIDE:Q1RMR2 Ensembl:ENSBTAT00000002587 GeneID:535113
KEGG:bta:535113 CTD:6625 GeneTree:ENSGT00530000063750
InParanoid:Q1RMR2 OrthoDB:EOG4CJVJ7 NextBio:20876626
ArrayExpress:Q1RMR2 Uniprot:Q1RMR2
Length = 439
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 33/131 (25%), Positives = 65/131 (49%)
Query: 43 KARVRE--MEEEA-EKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEAD-LRSIYVGN 98
+A RE ME + EK+++ Q EV+ ++ M + + D ++++V
Sbjct: 59 RAETREERMERKRREKIERRQQEVETELKMWDPHN---------DPNAQGDAFKTLFVAR 109
Query: 99 VDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA-MDESLF 157
V+Y T +L F G + R+ ++ +K G P+G+A+IE+ + + +A D
Sbjct: 110 VNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 169
Query: 158 RGRQIKVNPKR 168
GR++ V+ +R
Sbjct: 170 DGRRVLVDVER 180
>UNIPROTKB|F6V5G7 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 Ensembl:ENSCAFT00000005969
EMBL:AAEX03000805 RefSeq:XP_541503.2 ProteinModelPortal:F6V5G7
GeneID:484388 KEGG:cfa:484388 Uniprot:F6V5G7
Length = 439
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 33/131 (25%), Positives = 65/131 (49%)
Query: 43 KARVRE--MEEEA-EKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEAD-LRSIYVGN 98
+A RE ME + EK+++ Q EV+ ++ M + + D ++++V
Sbjct: 59 RAETREERMERKRREKIERRQQEVETELKMWDPHN---------DPNAQGDAFKTLFVAR 109
Query: 99 VDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA-MDESLF 157
V+Y T +L F G + R+ ++ +K G P+G+A+IE+ + + +A D
Sbjct: 110 VNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 169
Query: 158 RGRQIKVNPKR 168
GR++ V+ +R
Sbjct: 170 DGRRVLVDVER 180
>MGI|MGI:98341 [details] [associations]
symbol:Snrnp70 "small nuclear ribonucleoprotein 70 (U1)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98341 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 OrthoDB:EOG4CJVJ7 ChiTaRS:SNRNP70
EMBL:AK133115 EMBL:AK146729 EMBL:X15769 EMBL:X15770 EMBL:X15771
EMBL:X15772 EMBL:X15774 EMBL:X15775 EMBL:X15776 IPI:IPI00230541
IPI:IPI00625105 PIR:S04336 PIR:S04824 RefSeq:NP_033250.3
UniGene:Mm.216386 ProteinModelPortal:Q62376 SMR:Q62376
MINT:MINT-1868298 STRING:Q62376 PhosphoSite:Q62376 PaxDb:Q62376
PRIDE:Q62376 Ensembl:ENSMUST00000074575 GeneID:20637 KEGG:mmu:20637
HOVERGEN:HBG094947 InParanoid:Q62376 NextBio:299035 Bgee:Q62376
Genevestigator:Q62376 GermOnline:ENSMUSG00000063511 Uniprot:Q62376
Length = 448
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 33/131 (25%), Positives = 65/131 (49%)
Query: 43 KARVRE--MEEEA-EKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEAD-LRSIYVGN 98
+A RE ME + EK+++ Q EV+ ++ M + + D ++++V
Sbjct: 59 RAETREERMERKRREKIERRQQEVETELKMWDPHN---------DPNAQGDAFKTLFVAR 109
Query: 99 VDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA-MDESLF 157
V+Y T +L F G + R+ ++ +K G P+G+A+IE+ + + +A D
Sbjct: 110 VNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 169
Query: 158 RGRQIKVNPKR 168
GR++ V+ +R
Sbjct: 170 DGRRVLVDVER 180
>UNIPROTKB|I3LNE5 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:FP102974 Ensembl:ENSSSCT00000022304 Uniprot:I3LNE5
Length = 452
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 33/131 (25%), Positives = 65/131 (49%)
Query: 43 KARVRE--MEEEA-EKLKQLQSEVDKQMSMGXXXXXXXXXXXXIEEKKEAD-LRSIYVGN 98
+A RE ME + EK+++ Q EV+ ++ M + + D ++++V
Sbjct: 59 RAETREERMERKRREKIERRQQEVETELKMWDPHN---------DPNAQGDAFKTLFVAR 109
Query: 99 VDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA-MDESLF 157
V+Y T +L F G + R+ ++ +K G P+G+A+IE+ + + +A D
Sbjct: 110 VNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 169
Query: 158 RGRQIKVNPKR 168
GR++ V+ +R
Sbjct: 170 DGRRVLVDVER 180
>SGD|S000005054 [details] [associations]
symbol:NOP15 "Constituent of 66S pre-ribosomal particles"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0042273 "ribosomal large
subunit biogenesis" evidence=IMP;IPI] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0000915 "cytokinesis, actomyosin contractile
ring assembly" evidence=IMP] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000005054 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
GO:GO:0000915 EMBL:Z69382 GO:GO:0042273 GO:GO:0030687 GO:GO:0006364
eggNOG:NOG244773 GeneTree:ENSGT00390000011515 KO:K14838 EMBL:Z71386
EMBL:AY693098 PIR:S63051 RefSeq:NP_014289.1
ProteinModelPortal:P53927 SMR:P53927 DIP:DIP-4741N IntAct:P53927
MINT:MINT-551800 STRING:P53927 PaxDb:P53927 PeptideAtlas:P53927
EnsemblFungi:YNL110C GeneID:855613 KEGG:sce:YNL110C CYGD:YNL110c
HOGENOM:HOG000000855 OMA:QKHEERI OrthoDB:EOG4BK8DG NextBio:979795
Genevestigator:P53927 GermOnline:YNL110C Uniprot:P53927
Length = 220
Score = 108 (43.1 bits), Expect = 0.00019, P = 0.00019
Identities = 39/152 (25%), Positives = 66/152 (43%)
Query: 30 QSKCTDEAELAAMKARVREMEEEAEK----LKQLQSEVDKQMSMGXXXXXXXXXXXXIEE 85
+ K E E A++ +EE EK ++ L + D+Q G E
Sbjct: 20 EEKPIQEKEELALETSSSSSDEEDEKDEDEIEGLAASDDEQS--GTHKIKRLNPKKQANE 77
Query: 86 KKEADLRS-------IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYI 138
KK D ++ IYV + +G +EL +F G + V + NK G+ + + ++
Sbjct: 78 KKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFL 137
Query: 139 EFADKDSVQTAM-AMDESLFRGR--QIKVNPK 167
EF +K+ A +M+ L G Q++V PK
Sbjct: 138 EFVNKEDAMIAQESMNNYLLMGHLLQVRVLPK 169
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 103 (41.3 bits), Expect = 0.00019, P = 0.00019
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA-M 152
+++G + +G L F G V ++ ++ G +GF ++ F D+ + A++ M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 153 DESLFRGRQIKVNPKRTNRP 172
D GR I+VNP +RP
Sbjct: 97 DGKELNGRHIRVNPAN-DRP 115
>RGD|1311646 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T-cells 3" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
RGD:1311646 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 EMBL:CH473973
GeneTree:ENSGT00550000074656 InterPro:IPR008669 Pfam:PF05391
CTD:9733 OMA:SQAVMKM OrthoDB:EOG4RXXZG IPI:IPI00371231
RefSeq:NP_001100626.1 UniGene:Rn.101480 Ensembl:ENSRNOT00000000891
GeneID:304582 KEGG:rno:304582 UCSC:RGD:1311646 NextBio:653335
Uniprot:D3ZAS8
Length = 960
Score = 116 (45.9 bits), Expect = 0.00020, P = 0.00020
Identities = 39/156 (25%), Positives = 66/156 (42%)
Query: 16 ENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKL--KQLQSEVDKQMSMGXXX 73
E+ D E G+ E +Q E ++ + V +EE KL K L +V
Sbjct: 625 EDDDERECGEEEEEQPSKRRRME-NSLASGVASAKEEETKLSGKCLTIDVAPPSKQKEKA 683
Query: 74 XXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESH--FHGCGSVNRVT-ILCNKFDG 130
+ D +++V N+ Y E++ F CG V ++ I N+ G
Sbjct: 684 ASLKRDMPKVAHDSSKDSVTVFVSNLPYSIEEPEVKLRPLFEACGEVVQIRPIFSNR--G 741
Query: 131 HPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNP 166
+G+ Y+EF ++ S Q A+ +D GR + V+P
Sbjct: 742 DFRGYCYVEFKEEKSAQQALDLDRKNVEGRPMFVSP 777
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 100 (40.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
+YVGN+ + LE F G V ++ ++ G +GF ++ +D D + A+ A+
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 153 DESLFRGRQIKVNPKRTNRP 172
D GR I+VN P
Sbjct: 306 DGQNLEGRAIRVNVAEERPP 325
Score = 46 (21.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 1 MSDQENSFIHEEENFENGDHIEN----GDM-EADQSKCTDEAELAAM-KARVREMEEEAE 54
+ + ENS E ++ GD E GD+ E D+S+ D +E A +A E EEA+
Sbjct: 95 VEETENSL--ESQDVSEGDESEGDASEGDVSEGDESE-GDVSEGAVSERAEFPEPSEEAK 151
Query: 55 K-LKQLQSEVDKQ 66
+ L +V+ Q
Sbjct: 152 LFVGNLAYDVNSQ 164
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 110 (43.8 bits), Expect = 0.00021, P = 0.00021
Identities = 28/114 (24%), Positives = 47/114 (41%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMD 153
++VG + + +E+ +F G + I+ +K G KG+ ++ F D DS A+A
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADP 78
Query: 154 ESLFRGRQIKVNPKRTNRPGISTTNXXXXXXXXXXXXXXXAAMYGGYR-PVRRA 206
+ GR+ N RP ST + Y G PV++A
Sbjct: 79 NPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQSSYTGMAAPVQQA 132
>WB|WBGene00006697 [details] [associations]
symbol:uaf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0009790 "embryo
development" evidence=IMP] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0030628 "pre-mRNA 3'-splice site binding"
evidence=IDA] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0048589 GO:GO:0010172 GO:GO:0000398
GO:GO:0040020 GO:GO:0040022 EMBL:FO080242
GeneTree:ENSGT00690000102089 GO:GO:0030628 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:U79157
RefSeq:NP_001022967.1 RefSeq:NP_001022969.1 RefSeq:NP_497326.2
UniGene:Cel.18058 ProteinModelPortal:P90978 SMR:P90978
IntAct:P90978 MINT:MINT-1062639 STRING:P90978 PaxDb:P90978
PRIDE:P90978 EnsemblMetazoa:Y92C3B.2a GeneID:175270
KEGG:cel:CELE_Y92C3B.2 UCSC:Y92C3B.2b.1 CTD:175270
WormBase:Y92C3B.2a WormBase:Y92C3B.2b WormBase:Y92C3B.2c
InParanoid:P90978 OMA:TDGSTRA NextBio:887470 ArrayExpress:P90978
Uniprot:P90978
Length = 496
Score = 113 (44.8 bits), Expect = 0.00021, P = 0.00021
Identities = 32/93 (34%), Positives = 43/93 (46%)
Query: 92 RSIYVGNVDYGATAEELESHF----HGCG---SVNRVTILCN-KFDGHPKGFAYIEFADK 143
R +YVGN+ +G E + F H CG + +LC D K FA+IEF
Sbjct: 184 RRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLD---KNFAFIEFRSI 240
Query: 144 DSVQTAMAMDESLFRGRQIKVNPKRTNRPGIST 176
D MA D F G+Q+KV R +P +T
Sbjct: 241 DETTAGMAFDGINFMGQQLKVRRPRDYQPSQNT 273
>UNIPROTKB|Q8EK89 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 102 (41.0 bits), Expect = 0.00021, P = 0.00021
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK 143
+E+ ++YVGN+ Y E++ F G VN V ++ ++ G KGF ++E ++
Sbjct: 56 DEQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEA 115
Query: 144 DSVQTAMAMDESLFRGRQIKVNPKRT 169
+ + + +++ F+ R +KV +T
Sbjct: 116 GAQKAMVKLNDFNFQERTLKVREAKT 141
>TIGR_CMR|SO_0208 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 102 (41.0 bits), Expect = 0.00021, P = 0.00021
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK 143
+E+ ++YVGN+ Y E++ F G VN V ++ ++ G KGF ++E ++
Sbjct: 56 DEQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEA 115
Query: 144 DSVQTAMAMDESLFRGRQIKVNPKRT 169
+ + + +++ F+ R +KV +T
Sbjct: 116 GAQKAMVKLNDFNFQERTLKVREAKT 141
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 112 (44.5 bits), Expect = 0.00021, P = 0.00021
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
+ I+VG + T++E ++F G V+ I+ ++ P+GF ++ F +DSV +
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLH 169
Query: 152 MDESLFRGRQIKVN---PKRTNRPGIST 176
G+Q++V PK N PGI++
Sbjct: 170 KTFHDLNGKQVEVKRALPKDAN-PGIAS 196
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 92 (37.4 bits), Expect = 0.00022, P = 0.00022
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA-M 152
+YVGN+ T + L F G G+V ++ +++ +GF ++ ++ + A++ M
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 153 DESLFRGRQIKV 164
D GR++ V
Sbjct: 65 DGKELNGRRVSV 76
>SGD|S000001323 [details] [associations]
symbol:SNP1 "Component of U1 snRNP required for mRNA splicing
via spliceosome" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IPI] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0030619 "U1 snRNA binding"
evidence=IPI] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0005685
"U1 snRNP" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000001323 GO:GO:0000166
EMBL:BK006942 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
EMBL:Z38060 GO:GO:0000243 eggNOG:COG0724 GO:GO:0071004
GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 HOGENOM:HOG000000970 OrthoDB:EOG4HMNKR
GO:GO:0030619 EMBL:X59986 EMBL:AY558085 PIR:S16815
RefSeq:NP_012203.1 ProteinModelPortal:Q00916 SMR:Q00916
DIP:DIP-663N IntAct:Q00916 MINT:MINT-397124 STRING:Q00916
PaxDb:Q00916 PeptideAtlas:Q00916 EnsemblFungi:YIL061C GeneID:854749
KEGG:sce:YIL061C CYGD:YIL061c OMA:ETSSSAY NextBio:977479
Genevestigator:Q00916 GermOnline:YIL061C Uniprot:Q00916
Length = 300
Score = 110 (43.8 bits), Expect = 0.00022, P = 0.00022
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 87 KEAD-LRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
K+ D R+I++G + Y EL+ +F G + ++ I+ +K KG+A+I F KD
Sbjct: 101 KDTDPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVF--KDP 158
Query: 146 VQTAMAMDE-SLFRGRQIK 163
+ + MA E + RG QIK
Sbjct: 159 ISSKMAFKEIGVHRGIQIK 177
>UNIPROTKB|G4NC92 [details] [associations]
symbol:MGG_01109 "Nuclear cap-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CM001235
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:XP_003717825.1
ProteinModelPortal:G4NC92 EnsemblFungi:MGG_01109T0 GeneID:2674842
KEGG:mgr:MGG_01109 Uniprot:G4NC92
Length = 155
Score = 102 (41.0 bits), Expect = 0.00023, P = 0.00023
Identities = 32/87 (36%), Positives = 44/87 (50%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCN----KFDGHPKGFAYIEFADKDSVQT 148
++YVG + AT L F G + V + N + H +GFAY+E+ D D +
Sbjct: 10 TLYVGGLPAAATEASLHDAFIPFGEIADVKMPKNDNPKSAETH-RGFAYVEYEDADDAKE 68
Query: 149 AMA-MDESLFRGRQIKVN----PKRTN 170
AM MD+S F GR IKV+ PK N
Sbjct: 69 AMDNMDQSEFFGRIIKVHAAKPPKSAN 95
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 102 (41.0 bits), Expect = 0.00023, P = 0.00023
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
++VG +++ + LE HF G ++ V ++ ++ +GF +I F + + M AM
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 153 DESLFRGRQIKVN 165
+ GRQI+V+
Sbjct: 68 NGESLDGRQIRVD 80
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 113 (44.8 bits), Expect = 0.00023, P = 0.00023
Identities = 39/173 (22%), Positives = 73/173 (42%)
Query: 2 SDQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQS 61
SD E+S + E+ E GD + + + +++ + + + +EE+
Sbjct: 192 SDSEDS---DSESEEEAPAKAKGDAKTSKEESDSDSDSSESSS---DSDEESGSSGSESE 245
Query: 62 EVDKQMSMGXXXXXXXXXXXXIEEK-KEADLRSIYVGNVDYGATAEELESHFHGCGSVNR 120
+ DK + K +E +++VGN+ + T E L F G ++
Sbjct: 246 DSDKPADSKKRKAEEEPAAASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGELS- 304
Query: 121 VTILCNKFDGHPKGFAYIEFADK-DSVQTAMAMDESLFRGRQIKVNPKRTNRP 172
I+ + G +GF Y+EF + D+ + AM E GR+I ++ T RP
Sbjct: 305 ARIMTERDTGRSRGFGYVEFTNAADAAKAYEAMKEHEIDGRKINLD-YATGRP 356
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 108 (43.1 bits), Expect = 0.00024, P = 0.00024
Identities = 19/80 (23%), Positives = 38/80 (47%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
+K+ I+VG + Y T L +F G G + ++ ++ G +G+ ++ AD+ +
Sbjct: 28 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 87
Query: 146 VQTAMAMDESLFRGRQIKVN 165
+ A + GR+ VN
Sbjct: 88 AERACKDPNPIIDGRKANVN 107
>UNIPROTKB|Q56JZ7 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
Length = 217
Score = 107 (42.7 bits), Expect = 0.00024, P = 0.00024
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ--TAM 150
++YV N+ + T +L F G V +VTI+ +K KG A+I F DKDS Q T
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTRA 70
Query: 151 AMDESLFRGRQIKVN 165
++ LF GR IK +
Sbjct: 71 INNKQLF-GRVIKAS 84
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 114 (45.2 bits), Expect = 0.00026, P = 0.00026
Identities = 36/158 (22%), Positives = 72/158 (45%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMG 70
E+E+ E D E D E ++ + DE E E EEE E +K+ + K+M+
Sbjct: 237 EDEDEEEDDEDEEDDDEEEEDEDDDEEE----DEEEEEEEEEEEPVKEAPGKRKKEMAK- 291
Query: 71 XXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDG 130
+E + +++VGN+++ +A EL++ + N + ++ + G
Sbjct: 292 -QKAAPEAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDLFAKNDLAVVDVRI-G 349
Query: 131 HPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVN-PK 167
+ F Y++F + ++ A+ + G +IK+ PK
Sbjct: 350 VSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 387
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 110 (43.8 bits), Expect = 0.00027, P = 0.00027
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
RS++VGN+ Y + + + S F G+V + ++ ++ G PKG+ +IEF D + + A+
Sbjct: 18 RSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIR 77
Query: 152 -MDESLFRGRQIKVN 165
++ GR ++V+
Sbjct: 78 NLNGYELSGRILRVD 92
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 107 (42.7 bits), Expect = 0.00027, P = 0.00027
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 90 DLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTA 149
++ ++VG +D+ T E L S+F G V I+ +K +GF +++F D + V T
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 150 MAMDESLFRGRQIKVNPKRTN 170
+A GR K P+ N
Sbjct: 68 LASRPHTLDGRNQK-GPRSDN 87
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 103 (41.3 bits), Expect = 0.00028, P = 0.00028
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 89 ADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQT 148
+D +++G +++ E LE F G ++ V ++ ++ +GF ++ F + D +
Sbjct: 2 SDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKD 61
Query: 149 AM-AMDESLFRGRQIKVN 165
AM AM+ GRQI+V+
Sbjct: 62 AMMAMNGKAVDGRQIRVD 79
>DICTYBASE|DDB_G0276725 [details] [associations]
symbol:DDB_G0276725 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0276725 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:COG0724
RefSeq:XP_643007.1 ProteinModelPortal:Q550X7
EnsemblProtists:DDB0202911 GeneID:8620667 KEGG:ddi:DDB_G0276725
InParanoid:Q550X7 Uniprot:Q550X7
Length = 78
Score = 91 (37.1 bits), Expect = 0.00028, P = 0.00028
Identities = 21/73 (28%), Positives = 41/73 (56%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK-DSVQTAMA 151
SIYVG ++ + E L++ F G + + + K G +G+AYIE+ +K D+V+
Sbjct: 5 SIYVGGLNSHISKEILKTKFSVYGEIQSLVFVKGKETGISEGYAYIEYNNKEDAVKAIDD 64
Query: 152 MDESLFRGRQIKV 164
+++ F G +++
Sbjct: 65 LNDQPFEGNHLEL 77
>FB|FBgn0260944 [details] [associations]
symbol:Rbp1 "RNA-binding protein 1" species:7227 "Drosophila
melanogaster" [GO:0035327 "transcriptionally active chromatin"
evidence=IDA] [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS;NAS] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006376 "mRNA splice site
selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0035327 GO:GO:0045292 GO:GO:0006376 EMBL:L04929 EMBL:AY069252
EMBL:S51691 EMBL:S51740 PIR:A46398 PIR:A47752 PIR:A48110
RefSeq:NP_524307.1 RefSeq:NP_731510.1 UniGene:Dm.2213
ProteinModelPortal:Q02427 SMR:Q02427 IntAct:Q02427 MINT:MINT-277307
STRING:Q02427 PaxDb:Q02427 EnsemblMetazoa:FBtr0082277 GeneID:41294
KEGG:dme:Dmel_CG17136 CTD:5947 FlyBase:FBgn0260944 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 InParanoid:Q02427 OMA:ARECRRG
OrthoDB:EOG4CNP7N PhylomeDB:Q02427 GenomeRNAi:41294 NextBio:823159
Bgee:Q02427 GermOnline:CG17136 Uniprot:Q02427
Length = 144
Score = 99 (39.9 bits), Expect = 0.00029, P = 0.00029
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 87 KEADLR-SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK-D 144
+E DL +YVGN+ A+ E+E F G + V + N P GFA++EF D+ D
Sbjct: 5 REWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARN-----PPGFAFVEFEDRRD 59
Query: 145 SVQTAMAMDESLFRGRQIKV 164
+ A+D + G +I+V
Sbjct: 60 AEDATRALDGTRCCGTRIRV 79
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 99 (39.9 bits), Expect = 0.00029, P = 0.00029
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSV-QTAMAM 152
+++ + + T EELE G+V + ++ N+ G PKG AY+E+ ++ Q M M
Sbjct: 42 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA-GKPKGLAYVEYENESQASQAVMKM 100
Query: 153 DESLFRGRQIKV---NPKRTNRP 172
D + IKV NP + P
Sbjct: 101 DGMTIKENIIKVAISNPPQRKVP 123
>UNIPROTKB|F1NJ86 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02009328 IPI:IPI00598515
Ensembl:ENSGALT00000032138 ArrayExpress:F1NJ86 Uniprot:F1NJ86
Length = 233
Score = 107 (42.7 bits), Expect = 0.00030, P = 0.00030
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK 143
E K+ D R++YV + +E F CG+V V+I K G PKGFA++EF K
Sbjct: 119 ERPKDVDSRTVYVELLPKNVNHSWIERVFGKCGNVVYVSIPRYKSTGDPKGFAFVEFETK 178
Query: 144 DSVQTAM 150
+ + A+
Sbjct: 179 EQAEKAI 185
>UNIPROTKB|Q5ZKR5 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
Length = 168
Score = 103 (41.3 bits), Expect = 0.00030, P = 0.00030
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 83 IEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFAD 142
++EK ++YVGN+ + T E+++ F CG V R+ + +K P GF ++E+
Sbjct: 34 LQEKFLKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYT 93
Query: 143 KDSVQTAM 150
+ + AM
Sbjct: 94 RADAEHAM 101
>UNIPROTKB|E2QXZ2 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 GeneTree:ENSGT00550000074656
InterPro:IPR008669 Pfam:PF05391 OMA:SQAVMKM EMBL:AAEX03014754
Ensembl:ENSCAFT00000018071 Uniprot:E2QXZ2
Length = 1082
Score = 115 (45.5 bits), Expect = 0.00032, P = 0.00032
Identities = 37/161 (22%), Positives = 64/161 (39%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDEAELAAMKA-RVREMEEEAEKL-KQLQSEVDKQMS 68
++ E D E GD E +Q + E + A +++E E K +VD
Sbjct: 740 DKRKAEEDDEKEWGDDEEEQPSKRRKVENSTPPAGEAQDLEAEMGLFGKSAPVDVDPPSK 799
Query: 69 MGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESH--FHGCGSVNRVT-ILC 125
+ D +++V N+ Y E++ F CG V + I
Sbjct: 800 QKERAAALKRDMPKVPHDSSKDSITVFVSNLPYSMDEPEVKLRPLFEACGEVTEIRPIFS 859
Query: 126 NKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNP 166
N+ G +G+ Y+EF ++ S A+ +D GR + V+P
Sbjct: 860 NR--GDFRGYCYVEFKEEKSALQALELDRKTVEGRPMFVSP 898
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 112 (44.5 bits), Expect = 0.00034, P = 0.00034
Identities = 36/164 (21%), Positives = 70/164 (42%)
Query: 2 SDQENSFIHEEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQS 61
S E+S +EE+ + + D +A + +DE+ ++ E E+E E K+ S
Sbjct: 218 SSDEDS---DEESEDEKPAQKKADTKASKKSSSDESS----ESEEDESEDEEETPKKKSS 270
Query: 62 EVDKQMSMGXXXXXXXXXXXXIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRV 121
+V+ M ++++ N+ + ++E+ F G V V
Sbjct: 271 DVE----MVDAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDV 326
Query: 122 TILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVN 165
N+ DG +GF ++EFA + Q A+ GR+I+++
Sbjct: 327 RFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLD 370
>UNIPROTKB|Q8TBF4 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
Length = 217
Score = 106 (42.4 bits), Expect = 0.00034, P = 0.00034
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ--TAM 150
++YV N+ + T +L F G V +VTI+ +K KG A+I F DKDS Q T
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
Query: 151 AMDESLFRGRQIKVN 165
++ LF GR IK +
Sbjct: 71 INNKQLF-GRVIKAS 84
WARNING: HSPs involving 60 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.129 0.361 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 207 180 0.00092 109 3 11 23 0.48 32
31 0.39 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 310
No. of states in DFA: 562 (60 KB)
Total size of DFA: 144 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.84u 0.08s 22.92t Elapsed: 00:00:16
Total cpu time: 22.87u 0.08s 22.95t Elapsed: 00:00:16
Start: Thu Aug 15 13:50:05 2013 End: Thu Aug 15 13:50:21 2013
WARNINGS ISSUED: 2