RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13533
(207 letters)
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 70.8 bits (173), Expect = 4e-17
Identities = 14/72 (19%), Positives = 29/72 (40%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMD 153
+++G + + T E L +F G V ++ + +GF ++ F D+ V +A
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62
Query: 154 ESLFRGRQIKVN 165
+ I
Sbjct: 63 RHELDSKTIDPK 74
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 70.5 bits (172), Expect = 9e-17
Identities = 15/83 (18%), Positives = 38/83 (45%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK 143
+++++ R +++G + + T E L +++ G + ++ + +GF ++ F+
Sbjct: 13 KKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 72
Query: 144 DSVQTAMAMDESLFRGRQIKVNP 166
V AMA GR ++
Sbjct: 73 AEVDAAMAARPHSIDGRVVEPKR 95
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 69.6 bits (170), Expect = 1e-16
Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-A 151
S+YVG++ T L F G + + + + G+AY+ F + A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 152 MDESLFRGRQIKVNPKRTN 170
M+ + +G+ +++ + +
Sbjct: 62 MNFDVIKGKPVRIMWSQRD 80
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 68.5 bits (167), Expect = 5e-16
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 85 EKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKD 144
+E D R+++ + +LE F G V V I+ ++ KG AY+EF +
Sbjct: 12 SPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQ 71
Query: 145 SVQTAMAMDESLFRGRQIKVNP--KRTNR 171
SV A+ + G I V NR
Sbjct: 72 SVPLAIGLTGQRLLGVPIIVQASQAEKNR 100
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 67.8 bits (165), Expect = 7e-16
Identities = 19/80 (23%), Positives = 37/80 (46%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
K+ LR +++G + + T E L SHF G++ ++ + +GF ++ +A +
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 146 VQTAMAMDESLFRGRQIKVN 165
V AM GR ++
Sbjct: 61 VDAAMNARPHKVDGRVVEPK 80
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 65.4 bits (159), Expect = 5e-15
Identities = 14/72 (19%), Positives = 31/72 (43%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMD 153
I+VG + E++ +F G G V + + + +GF +I F +++ V+ M
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61
Query: 154 ESLFRGRQIKVN 165
+ ++
Sbjct: 62 YHNVGLSKCEIK 73
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 65.2 bits (158), Expect = 7e-15
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTIL-----CNKFDGHPKGFAYIEFADKDSV 146
R +YVGN+ +G T E + F+ + +T K FA++EF D
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 147 QTAMAMDESLFRGRQIKVNPKRTNRP 172
AMA D +F+G+ +K+ +P
Sbjct: 62 TQAMAFDGIIFQGQSLKIRRPHDYQP 87
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 64.6 bits (157), Expect = 1e-14
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 85 EKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKD 144
EK ++YVGN+ + T E++ F G + ++ + +K GF ++E+ +
Sbjct: 1 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRA 60
Query: 145 SVQTAM-AMDESLFRGRQIKVNPKRTNRPG 173
+ AM ++ + R I+ + + G
Sbjct: 61 DAENAMRYINGTRLDDRIIRTDWDAGFKEG 90
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 63.1 bits (153), Expect = 3e-14
Identities = 17/72 (23%), Positives = 34/72 (47%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMD 153
+++G + + T ++L+ +F G V T+ + G +GF ++ F + +SV M
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61
Query: 154 ESLFRGRQIKVN 165
E G+ I
Sbjct: 62 EHKLNGKVIDPK 73
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 61.9 bits (150), Expect = 8e-14
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-A 151
++ V + T EL + F G +N I+ + G+ G+A+++F + Q A+
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 152 MDESLFRGRQIKVNPKRTNRPG 173
++ R +++KV+ RPG
Sbjct: 64 LNGITVRNKRLKVSYA---RPG 82
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 62.0 bits (150), Expect = 1e-13
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFD---GHPKGFAYIEFADKDSVQTAM 150
+++ N+++ T E L+ F G++ TI K GF ++E+ + Q A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 151 -AMDESLFRGRQIKVNP-KRTNRP 172
+ G +++V +R +P
Sbjct: 61 KQLQGHTVDGHKLEVRISERATKP 84
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 61.7 bits (149), Expect = 1e-13
Identities = 18/74 (24%), Positives = 32/74 (43%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
+ I+VG + L +F G + + I+ ++ G +GFA++ F D DSV +
Sbjct: 3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 62
Query: 152 MDESLFRGRQIKVN 165
G +V
Sbjct: 63 QKYHTVNGHNCEVR 76
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 62.1 bits (150), Expect = 2e-13
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
+K+ I+VG + Y T L +F G G + ++ ++ G +G+ ++ AD+ +
Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 146 VQTAMAMDESLFRGRQIKVNPK------RTNRPGIS 175
+ A + GR+ VN R+ + G +
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFA 100
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 61.7 bits (149), Expect = 2e-13
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
+ ++GN+ Y T E ++ F G KGF Y EF D DS+ +A++
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 75
Query: 152 MDESLFRGRQIKVN---PKRTNRPGIST 176
++E ++I+V+ + G S+
Sbjct: 76 LNEESLGNKRIRVDVADQAQDKDSGPSS 103
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 60.9 bits (147), Expect = 2e-13
Identities = 14/72 (19%), Positives = 33/72 (45%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMD 153
I+VG + T E+++ +F G V+ ++ +K +GF ++ F +D V+ +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIH 61
Query: 154 ESLFRGRQIKVN 165
+ ++
Sbjct: 62 FHEINNKMVECK 73
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 61.7 bits (149), Expect = 2e-13
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
+ LRS++VGN+ Y AT E+L+ F G V ++ ++ G PKG+ + E+ D+++
Sbjct: 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 62
Query: 146 VQTAM-AMDESLFRGRQIKVNP--KRTNRPGISTTNRGGP 182
+AM ++ F GR ++V+ N+ + + G P
Sbjct: 63 ALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAP 102
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 60.9 bits (147), Expect = 2e-13
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
K + RS+Y+ AT ++++ G V + KG ++ F +S
Sbjct: 1 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLN-IQMRRTLHKAFKGSIFVVFDSIES 59
Query: 146 VQTAMAMDESLFRGRQIKVNPK 167
+ + ++ + + K
Sbjct: 60 AKKFVETPGQKYKETDLLILFK 81
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 61.6 bits (149), Expect = 3e-13
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
R +Y+ N+ Y TAEE+ F G + ++ +G AY+ + D + A
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQI---RVGNTPETRGTAYVVYEDIFDAKNACD 64
Query: 151 AMDESLFRGRQIKVNPKRTNRP 172
+ R + V NR
Sbjct: 65 HLSGFNVCNRYLVVLYYNANRA 86
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 60.9 bits (147), Expect = 4e-13
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
++V N+ Y ++ E+LE F G ++ + + PKGFA++ F + A
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
Query: 151 AMDESLFRGRQIKVNPKRTNRPGISTTNRGGPR 183
+D +F+GR + V P + ++ GP
Sbjct: 69 EVDGQVFQGRMLHVLPSTIKKEA----SQSGPS 97
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 60.4 bits (146), Expect = 4e-13
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
++YV N+ T ++L++ F GS+ + IL +K G P+G A++ + ++ Q A+
Sbjct: 7 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 66
Query: 151 AMDESLFRG--RQIKVN 165
A++ + G + + V
Sbjct: 67 ALNNVIPEGGSQPLSVR 83
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 59.7 bits (144), Expect = 6e-13
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
++ V + T EE S F G + ++ +K G G+ ++ + D + A+
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 151 AMDESLFRGRQIKVNPKR 168
++ + + IKV+ R
Sbjct: 63 TLNGLRLQTKTIKVSYAR 80
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 60.0 bits (145), Expect = 7e-13
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 87 KEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCN-KFDGHPKGFAYIEFADKDS 145
K+ I V N+ + A E+ F G + V + G +GF +++F K
Sbjct: 4 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQD 63
Query: 146 VQTAMA--MDESLFRGRQIKVN 165
+ A + GR++ +
Sbjct: 64 AKKAFNALCHSTHLYGRRLVLE 85
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 59.7 bits (144), Expect = 7e-13
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
I V N+ + + +E+ F+G + L G P G A + F +D A+ +
Sbjct: 12 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 71
Query: 153 DESLFRGRQIKVN 165
++ R++K+
Sbjct: 72 NDRPIGSRKVKLV 84
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 59.7 bits (144), Expect = 7e-13
Identities = 15/81 (18%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
++ + ++V ++ A +E++ F G + + + ++ G KG+A +E+
Sbjct: 2 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQ 61
Query: 146 VQTAM-AMDESLFRGRQIKVN 165
A A++ + G+ I+V+
Sbjct: 62 ALAAKEALNGAEIMGQTIQVD 82
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 58.9 bits (142), Expect = 2e-12
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
R +YVG + + L + F G + + I + +GFA++EF + A+
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 151 AMDESLFRGRQIKVNPKRTNRP 172
M+ES GR I+VN + R
Sbjct: 66 NMNESELFGRTIRVNLAKPMRI 87
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 58.9 bits (142), Expect = 2e-12
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 76 NNLLNLSIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGF 135
+++L KK R++ N+ + T +EL+ F + V+ DG KG
Sbjct: 1 SHMLEDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQ-----DGKSKGI 55
Query: 136 AYIEFADKDSVQTAM-AMDESLFRGRQIKVN---PKRTNR 171
AYIEF + + + + GR + + K R
Sbjct: 56 AYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGGTR 95
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 58.5 bits (141), Expect = 2e-12
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
++YVG +D + L F G V + ++ G +G+ ++EF ++ A+
Sbjct: 10 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 69
Query: 151 AMDESLFRGRQIKVN---PKRTN 170
MD G+ I+VN N
Sbjct: 70 IMDMIKLYGKPIRVNKASAHNKN 92
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 58.3 bits (140), Expect = 4e-12
Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 2/105 (1%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK 143
E + ++ N+ + T ++ G + +G G A ++F ++
Sbjct: 1 EGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNE 60
Query: 144 DSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRG 188
D + + + GR+ V+ + + P G
Sbjct: 61 DDARKSERLHRKKLNGREAFVHV--VTLEDMREIEKNPPAQGKSG 103
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 58.0 bits (140), Expect = 4e-12
Identities = 16/90 (17%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 92 RSIYVGNVD-YGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+++GN++ ++E+ F G + ++ GFA++++ ++ + + A+
Sbjct: 16 SRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVNERNARAAV 67
Query: 151 -AMDESLFRGRQIKVN---PKRTNRPGIST 176
D + G+ + +N + NR G S+
Sbjct: 68 AGEDGRMIAGQVLDINLAAEPKVNRSGPSS 97
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 57.2 bits (138), Expect = 4e-12
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
+ V N+D+G + +++ F G++ + + G G A + F K AM
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAV-HYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 153 DESLFRGRQIKVN 165
+ GR + +
Sbjct: 62 NGVPLDGRPMNIQ 74
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 57.4 bits (138), Expect = 6e-12
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
+ V + T +L F G + V+I+ ++ +GFA++ F + D + A
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 151 AMDESLFRGRQIKV 164
+ GR+I+V
Sbjct: 70 RANGMELDGRRIRV 83
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 59.6 bits (143), Expect = 6e-12
Identities = 18/75 (24%), Positives = 32/75 (42%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
+ I+VG + L +F G + + I+ ++ G +GFA++ F D DSV +
Sbjct: 98 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 157
Query: 152 MDESLFRGRQIKVNP 166
G +V
Sbjct: 158 QKYHTVNGHNCEVRK 172
Score = 53.9 bits (128), Expect = 8e-10
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
K+ LR +++G + + T E L SHF G++ ++ + +GF ++ +A +
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 146 VQTAMAM 152
V AM
Sbjct: 61 VDAAMNA 67
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 57.4 bits (138), Expect = 7e-12
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
++ D +I V N+ +L+ F GS++R+ + +K G KGFA+I F ++
Sbjct: 3 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 62
Query: 146 VQTAM-AMDESLFRGRQIKVNPKR 168
A+ + + + V +
Sbjct: 63 AARAIAGVSGFGYDHLILNVEWAK 86
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 56.9 bits (137), Expect = 8e-12
Identities = 10/73 (13%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
+++G + ++++ G + ++ + G KG+A+ E+ D + A+ +
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 153 DESLFRGRQIKVN 165
+ +++ V
Sbjct: 64 NGMQLGDKKLLVQ 76
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 56.9 bits (137), Expect = 9e-12
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 85 EKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKD 144
++ + V + + T ++L+ +F G V V + + GH KGF ++ F + +
Sbjct: 2 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE 61
Query: 145 SVQTAMAMDESLFRGRQIKVNP 166
+ M+ + GR
Sbjct: 62 TQVKVMSQRHMI-DGRWCDCKL 82
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 57.0 bits (137), Expect = 1e-11
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
IYVGN+ +++E F+ G++ + K FA++EF D + A+
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDI---DLKNRRGGPPFAFVEFEDPRDAEDAVYGR 73
Query: 153 DESLFRGRQIKVNPKRTNRP 172
D + G +++V R+ R
Sbjct: 74 DGYDYDGYRLRVEFPRSGRG 93
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 56.6 bits (136), Expect = 1e-11
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
++YV + T +ELE F G + IL ++ G +G +I F + + A+
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
Query: 151 AMDESLFRGR--QIKVN 165
++ G I V
Sbjct: 67 GLNGQKPSGATEPITVK 83
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 56.5 bits (136), Expect = 1e-11
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 85 EKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKD 144
EK ++VGN+ T EE+ F G V I +K F +I +
Sbjct: 2 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRT 55
Query: 145 SVQTAM-AMDESLFRGRQIKVN 165
+ A +D RG+Q++V
Sbjct: 56 LAEIAKVELDNMPLRGKQLRVR 77
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 56.3 bits (135), Expect = 1e-11
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+D ++VG + + + LE F G ++ V ++ ++ +GF ++ F + D +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 148 TAM-AMDESLFRGRQIKVN---PKRTNR 171
AM AM+ GRQI+V+ NR
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNR 89
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 55.8 bits (134), Expect = 2e-11
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
++VG T +EL F G V V + FA++ FAD Q+
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDV-----FIPKPFRAFAFVTFADDQIAQSLC- 59
Query: 152 MDESLFRGRQIKVN---PKRTNRPGIS 175
++ + +G + ++ PK + G S
Sbjct: 60 GEDLIIKGISVHISNAEPKHNSNSGPS 86
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 54.8 bits (131), Expect = 5e-11
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 92 RSIYVGNVDYGATAEE-LESHFHG-CGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTA 149
R I + N+ E L F G K A++ F +KDS + A
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 150 MAMDESLFRGRQIKVN 165
+ M+ SL R+I V+
Sbjct: 65 LQMNRSLLGNREISVS 80
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 55.0 bits (132), Expect = 6e-11
Identities = 14/100 (14%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 74 NSNNLLNLSIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPK 133
N+ L + + ++Y G + G T + + F G + + + K
Sbjct: 1 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG----- 55
Query: 134 GFAYIEFADKDSVQTAM-AMDESLFRGRQIKVNPKRTNRP 172
++++ F+ +S A+ +++ + G +K + +
Sbjct: 56 -YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 94
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 55.7 bits (133), Expect = 8e-11
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 90 DLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTA 149
LR++ V + +L F G + V I+C++ +G+ +++F S Q A
Sbjct: 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQA 100
Query: 150 M-AMDESLFRGRQIKVNP--KRTNRPGISTTNRGGPRGRGRGRV 190
+ ++ +++KV RPG G G G G +
Sbjct: 101 IAGLNGFNILNKRLKVALAASGHQRPG-----IAGAVGDGNGYL 139
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 54.0 bits (129), Expect = 9e-11
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGH-PKGFAYIEFADKDSVQTAM-A 151
I++GN+D + L F G + + + D KG+A+I FA D+ A+ A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 152 MDESLFRGRQIKVN 165
M+ R I V+
Sbjct: 61 MNGQYLCNRPITVS 74
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 53.7 bits (128), Expect = 1e-10
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAM 152
++ V N+ ++ +F CG + V + FA IEFA D A+
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVA--DSLKKNFRFARIEFARYDGALAAITK 59
Query: 153 DESLFRGRQIKVN 165
+ +I V+
Sbjct: 60 THKVVGQNEIIVS 72
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 53.9 bits (129), Expect = 2e-10
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNR--VTILCNKFDGHPKGFAYIEFADKDSVQTA-- 149
+++G + EE+ + +GFA++E+ + A
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 150 -MAMDESLFRGRQIKVN 165
+ G QI V+
Sbjct: 64 KLMPGRIQLWGHQIAVD 80
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 53.5 bits (128), Expect = 2e-10
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 86 KKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDS 145
+ ++ + ++V N+ + +L F G + V I+ N+ KGF ++ F +
Sbjct: 6 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSAD 63
Query: 146 VQTAM-AMDESLFRGRQIKVN---PK-RTN 170
A + ++ GR+I+VN + TN
Sbjct: 64 ADRAREKLHGTVVEGRKIEVNNATARVMTN 93
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 53.5 bits (128), Expect = 2e-10
Identities = 15/80 (18%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 93 SIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-A 151
+I++ N+D + L F G++ ++C++ KG+ ++ F +++ + A+
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEK 67
Query: 152 MDESLFRGRQIKVNPKRTNR 171
M+ L R++ V ++ +
Sbjct: 68 MNGMLLNDRKVFVGRFKSRK 87
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 53.6 bits (128), Expect = 2e-10
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
+++ + Y AT ++ + F + + DG G A +EFA + AMA
Sbjct: 16 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEI--GPDGRVTGEADVEFATHEDAVAAMA 73
Query: 152 MDESLFRGRQIKVNPKRTNRPGISTTNRGGPR 183
D++ + R +++ T + T+ GP
Sbjct: 74 KDKANMQHRYVELFLNST-----AGTSGSGPS 100
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 53.2 bits (127), Expect = 2e-10
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 87 KEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILC--------NKFDGHPKGFAYI 138
+++D +IYV ++ T ++L F CG V +K G PKG A +
Sbjct: 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 63
Query: 139 EFADKDSVQTAM-AMDESLFRGRQIKVNPKRTNRP 172
+ D + + A+ D F+G ++KV+ R P
Sbjct: 64 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 98
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 53.2 bits (127), Expect = 3e-10
Identities = 15/81 (18%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
++++ ++ ++L F G+V + +K K F ++ + + S Q A+
Sbjct: 19 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 78
Query: 151 AMDESLFRGRQIKVNPKRTNR 171
+M+ +++KV KR+
Sbjct: 79 SMNGFQIGMKRLKVQLKRSKN 99
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 52.5 bits (125), Expect = 4e-10
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
++++ N T + V L + + FAYI+ K+ + +
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 151 AMDESLFRGRQIKVN 165
++ G +
Sbjct: 62 KLNGLKIEGYTLVTK 76
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 52.5 bits (125), Expect = 4e-10
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 90 DLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTA 149
+ +++++ N+ + + E L G + V ++ + H KG A+ +F +++ Q
Sbjct: 7 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKC 66
Query: 150 MA-------MDESLFRGRQIKVNP 166
+A GRQ+KV+
Sbjct: 67 LAAASLEAEGGGLKLDGRQLKVDL 90
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 51.6 bits (123), Expect = 9e-10
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 88 EADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ R++YVGN+ T + F G ++ P F +EF +
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCF--VEFYEHRDAA 62
Query: 148 TAM-AMDESLFRGRQIKVN 165
A+ AM+ G+++KVN
Sbjct: 63 AALAAMNGRKILGKEVKVN 81
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 50.5 bits (120), Expect = 1e-09
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
+Y+ + G T ++L G + + +K KG+ +++F + Q A+ A+
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 153 DESLFRGRQIK 163
S + + K
Sbjct: 61 KASGVQAQMAK 71
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 51.2 bits (122), Expect = 1e-09
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCN-KFDGHPKGFAYIEFADKDSVQTAM 150
+IY+ N++ +EL+ H S + +G A++ F + S A+
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNAL 63
Query: 151 -AMDESLFRGRQIKVNPKRTN 170
+M F + +++ +T+
Sbjct: 64 RSMQGFPFYDKPMRIQYAKTD 84
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 51.4 bits (122), Expect = 1e-09
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 70 GSPPNSNNLLNLSIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFD 129
GS +S N A+ + + + +G + EE+ F G V L F
Sbjct: 1 GSSGSSGN-------SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ 53
Query: 130 GHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRG 180
G G A+++FA ++ + A+ + R I++ S + G
Sbjct: 54 GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTSGPSSG 104
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 49.4 bits (117), Expect = 8e-09
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
+ +Y+ N+ T +L S F I G +G A+I F +K+ A+
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 151 AMDESLFRGRQIKVNPKRTNR 171
++ G+ + + + +
Sbjct: 79 LVNGYKLYGKILVIEFGKNKK 99
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 49.2 bits (117), Expect = 9e-09
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 15/102 (14%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
I V N+ Y T + L F G+V ++ + A +++AD S Q A ++
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSL 65
Query: 153 D--ESLFRGRQIKV--------NPKRTNRPGISTTNRGGPRG 184
D +++ N K N T P G
Sbjct: 66 DGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSG 107
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 48.8 bits (115), Expect = 1e-08
Identities = 14/88 (15%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 82 SIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFA 141
+E + ++++GN++ + EL+ + N + + + G + F Y++F
Sbjct: 4 MVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAV-VDVRTGTNRKFGYVDFE 62
Query: 142 DKDSVQTAMAMDESLFRGRQIKVNPKRT 169
+ ++ A+ + G +IK+ +
Sbjct: 63 SAEDLEKALELTGLKVFGNEIKLEKPKG 90
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 47.6 bits (113), Expect = 2e-08
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMD 153
+ V + + L F G++ + + + +I + K + A++ D
Sbjct: 7 VTVFGFPQASASYILL-QFAQYGNILKH------VMSNTGNWMHIRYQSKLQARKALSKD 59
Query: 154 ESLFRGRQ-IKVNP 166
+F I V P
Sbjct: 60 GRIFGESIMIGVKP 73
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 47.7 bits (113), Expect = 2e-08
Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK 143
+E + ++ +YV N+ + E +E F+ + + +A++ F+++
Sbjct: 1 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNR 54
Query: 144 DSVQTAM-AMDESLFRGRQIKVN 165
+ AM A++ + G I+V
Sbjct: 55 EDAVEAMKALNGKVLDGSPIEVT 77
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 47.6 bits (112), Expect = 4e-08
Identities = 13/75 (17%), Positives = 30/75 (40%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
+Y+ + + A + + F V + +G G ++EF ++ + A+
Sbjct: 19 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC 78
Query: 152 MDESLFRGRQIKVNP 166
+ R I+V+P
Sbjct: 79 RHKQYMGNRFIQVHP 93
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 47.1 bits (111), Expect = 4e-08
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 84 EEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADK 143
+++E D ++Y+ N+ +ELE+ G T + G +G +
Sbjct: 11 AKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQ-VISTRILRDSSGTSRGVGFARMEST 69
Query: 144 DSVQTAM-AMDESLFRGRQIKVNPKR 168
+ + + + + P
Sbjct: 70 EKCEAVIGHFNGKFIKTPPGVSAPTE 95
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 46.7 bits (110), Expect = 6e-08
Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMA 151
++++ N+ + E+L+ F G V + KF + A I+ + A+
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGV----VKGFKFFQKDRKMALIQMGSVEEAVQALI 66
Query: 152 M--DESLFRGRQIKVNPKRTN 170
+ L ++V+ ++
Sbjct: 67 DLHNHDLGENHHLRVSFSKST 87
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 45.4 bits (107), Expect = 1e-07
Identities = 13/81 (16%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
+Y+GN+ TA++L F + G+A++++ D++ A+ +
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQV------LLKSGYAFVDYPDQNWAIRAIETL 57
Query: 153 DESL-FRGRQIKVNPKRTNRP 172
+ G+ ++V+ + +
Sbjct: 58 SGKVELHGKIMEVDYSVSKKL 78
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 45.4 bits (107), Expect = 1e-07
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
++YV D T L F G++ + P+ A++ + +S A+
Sbjct: 6 NTLYVYGED--MTPTLLRGAFSPFGNIIDL------SMDPPRNCAFVTYEKMESADQAVA 57
Query: 151 AMDESLFRGRQIKVNPKR 168
++ + Q+KVN R
Sbjct: 58 ELNGTQVESVQLKVNIAR 75
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 45.6 bits (107), Expect = 2e-07
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 12/95 (12%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTA-- 149
++V + +L G++ V ++ K A +EF + DS +
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QALVEFENIDSAKECVT 69
Query: 150 -MAMDESLFRGRQIKVN---PKRTNRPGISTTNRG 180
A G+Q N KR RPG S + G
Sbjct: 70 FAADVPVYIAGQQAFFNYSTSKRITRPGNSGPSSG 104
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 45.2 bits (106), Expect = 2e-07
Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 7/80 (8%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCG------SVNRVTILCNKFDGHPKGFAYIEFADKDS 145
++V + E+ G V P AY+ + +
Sbjct: 9 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSED 68
Query: 146 VQTAM-AMDESLFRGRQIKV 164
A+ ++ + GR +K
Sbjct: 69 ALRAIQCVNNVVVDGRTLKA 88
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 44.7 bits (105), Expect = 2e-07
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
I V N+ + +E+ + K A++ + + Q A+
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDL-------KYCYVDRNKRTAFVTLLNGEQAQNAIQ 58
Query: 151 AMDESLFRGRQIKVNPKRTNRPGISTTNRG 180
+ FRG+ + V + T+ S + G
Sbjct: 59 MFHQYSFRGKDLIVQLQPTDALLCSGPSSG 88
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 44.4 bits (104), Expect = 5e-07
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
+ V + + ++L+ H D G +E+ K+ ++ A+
Sbjct: 16 FRVLVSGLPPSGSWQDLKDHMREA-------GDVCYADVQKDGMGMVEYLRKEDMEYALR 68
Query: 151 AMDESLFRGRQIKVNPKRTNRPGISTTNRG 180
+D++ FR + + + R S + G
Sbjct: 69 KLDDTKFRSHEGETSYIRVYPERSSGPSSG 98
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 44.0 bits (103), Expect = 6e-07
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 12/87 (13%)
Query: 93 SIYVGNVD-----YGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQ 147
+ + T + ES F I F++ S
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF------KSFKRVRINFSNPLSAA 60
Query: 148 TAM-AMDESLFRGRQIKVNPKRTNRPG 173
A + ++ F G+++K+ +T G
Sbjct: 61 DARLRLHKTEFLGKEMKLYFAQTLHIG 87
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 43.0 bits (100), Expect = 1e-06
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 12/95 (12%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
+ V + + ++L+ H D + G +EF K+ + A+ +
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREA-------GDVCYADVYRDGTGVVEFVRKEDMTYAVRKL 55
Query: 153 DESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGR 187
D + FR + + R R GR R
Sbjct: 56 DNTKFRSHEGETAYIRVKVD----GPRSPSYGRSR 86
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 42.7 bits (100), Expect = 2e-06
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
++VG + + L F GS+ + + FAYI++ D+ Q A
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS------FAYIQYESLDAAQAACA 71
Query: 151 AMDESLFRG--RQIKVNPKRTNR 171
M G R+++V+ ++
Sbjct: 72 KMRGFPLGGPDRRLRVDFAKSGP 94
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 41.7 bits (97), Expect = 6e-06
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 92 RSIYVGNVD-YGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM 150
+ V N++ T + L F G V RV IL + K A ++ AD + Q AM
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF-----NKKENALVQMADGNQAQLAM 57
Query: 151 -AMDESLFRGRQIKVN---PKRTNRPGISTTNRGGPRGRGRGRVSR 192
++ G+ I++ + P ++G + G + R
Sbjct: 58 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHR 103
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 41.5 bits (97), Expect = 6e-06
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 96 VGNVDYGATAEELESHFHGCGSVNRVTIL--CNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
+ + +Y E++ G V + I + + G ++EF Q AM +
Sbjct: 19 LDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL 78
Query: 153 DESLFRGRQIKVN 165
F R +
Sbjct: 79 TGRKFANRVVVTK 91
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 40.7 bits (95), Expect = 1e-05
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 106 EELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AMDESLFRGRQIKV 164
E+ S FD HP G A + F D + + +D F GRQI
Sbjct: 30 NEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 89
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.6 bits (92), Expect = 2e-05
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 89 ADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQT 148
+ + + + E G V + + N H G Y++F ++ +
Sbjct: 25 SAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEK 83
Query: 149 AM-AMDESLFRGRQIKVN 165
A+ ++ F G+ I
Sbjct: 84 AVIDLNNRWFNGQPIHAE 101
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 38.7 bits (89), Expect = 3e-05
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
I + + T +E+ KG A++ + + + A+
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFV-------DKYKGTAFVTLLNGEQAEAAINTF 53
Query: 153 DESLFRGRQIKVNPKRTN 170
+S R R++ V + T+
Sbjct: 54 HQSRLRERELSVQLQPTD 71
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 37.9 bits (87), Expect = 8e-05
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTA-- 149
R +++ + T E+ + + N K A++E A +++ T
Sbjct: 9 RVLHIRKLPGEVTETEVIALGLPF------GKVTNILMLKGKNQAFLELATEEAAITMVN 62
Query: 150 -MAMDESLFRGRQIKVN 165
+ R + I +
Sbjct: 63 YYSAVTPHLRNQPIYIQ 79
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 33.8 bits (76), Expect = 0.003
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 7/82 (8%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
I N+ G A E++ F GS+ RV A +EF + + A
Sbjct: 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRV------LLPEGGITAIVEFLEPLEARKAFR 64
Query: 151 AMDESLFRGRQIKVNPKRTNRP 172
+ S F + +
Sbjct: 65 HLAYSKFHHVPLYLEWAPIGVF 86
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 33.5 bits (76), Expect = 0.004
Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 94 IYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM-AM 152
+ G + G + +L CG V+ + + NK +++ + + + A +
Sbjct: 23 VANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARYRTTEESKRAYVTL 76
Query: 153 DES-LFRGRQIKVN 165
+ + K+
Sbjct: 77 NGKEVVDDLGQKIT 90
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 33.6 bits (76), Expect = 0.004
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 18/118 (15%)
Query: 82 SIEEKKEADLRSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFA 141
S+EEK + G++D E+L F G + + + I F
Sbjct: 4 SLEEKIGC--LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG------AKEGIILFK 55
Query: 142 DK--DSVQTAMAMDESLFRGRQIKVN--------PKRTNRPGISTTNRGGPRGRGRGR 189
+K +++ A + + R +V K + I + + +GR
Sbjct: 56 EKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKWKSKGR 113
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 32.9 bits (74), Expect = 0.005
Identities = 9/76 (11%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 92 RSIYVGNVDYGATAEELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAM- 150
+ +++ N+ L F+ + + A++EF + A
Sbjct: 9 QILFLTNLPEETNEMMLSMLFNQFPGFK-----EVRLVPNRHDIAFVEFTTELQSNAAKE 63
Query: 151 AMDES-LFRGRQIKVN 165
A+ + +K+
Sbjct: 64 ALQGFKITPTHAMKIT 79
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 186
Score = 31.8 bits (72), Expect = 0.030
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 36 EAELAAMKARVREMEEEAEKLKQLQSEVD---KQMSMGSPPNSNNLLNLSIEEKKEADLR 92
E L ++ RV+++E++ + ++ LQ + D K + N N S+ +K L
Sbjct: 10 EQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQQLE 69
Query: 93 S 93
Sbjct: 70 Q 70
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 29.4 bits (66), Expect = 0.21
Identities = 13/63 (20%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 36 EAELAAMKARVREMEEEAEKLKQLQSEVDKQM-SMGSPPNSNNLLNLSIEEKKEADLRSI 94
++++ +K +V +E E + L+ LQ E D + ++ + + N + S +++++ L+ +
Sbjct: 8 DSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKM 67
Query: 95 YVG 97
Y+
Sbjct: 68 YLM 70
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 27.5 bits (60), Expect = 0.80
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 17 NGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQL 59
GD D ++ + D+ + A EM EA L+
Sbjct: 103 AGD-FHRNDSIYEELQKHDKEDFPASWRSEEEMAAEAAALRVY 144
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 25.3 bits (55), Expect = 2.8
Identities = 10/54 (18%), Positives = 26/54 (48%)
Query: 35 DEAELAAMKARVREMEEEAEKLKQLQSEVDKQMSMGSPPNSNNLLNLSIEEKKE 88
D L A+ V+E+++ ++++ +++V K++ P L+ +E
Sbjct: 26 DLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEE 79
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 112
Score = 25.5 bits (56), Expect = 3.1
Identities = 5/24 (20%), Positives = 15/24 (62%)
Query: 42 MKARVREMEEEAEKLKQLQSEVDK 65
+K V+E ++ EK+ + + +++
Sbjct: 6 IKEMVQEDQKRMEKISKRVNAIEE 29
>d1c7ka_ d.92.1.1 (A:) Zinc protease {Streptomyces caespitosus
[TaxId: 53502]}
Length = 132
Score = 25.5 bits (56), Expect = 3.5
Identities = 6/26 (23%), Positives = 7/26 (26%)
Query: 179 RGGPRGRGRGRVSRGAAMYGGYRPVR 204
G GRG + Y R
Sbjct: 54 YAQTDGHGRGYIFLDYQQNQQYDSTR 79
>d1t3ua_ d.244.1.1 (A:) ZapA homologue PA5227 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 92
Score = 24.0 bits (52), Expect = 6.5
Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 38 ELAAMKARVREMEEE-AEKLKQLQSEVDKQMS 68
+L K R+ + E++++L VD+ ++
Sbjct: 60 DLLHRKERLDQESSSTRERVRELLDRVDRALA 91
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 173
Score = 24.7 bits (53), Expect = 7.8
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 35 DEAELAAMKARVREMEEEAEKLKQL 59
+E M+ +E+ +E E++K L
Sbjct: 146 NEFARKRMEITAQELLDEMEQVKAL 170
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum
(Sorghum vulgare), chloroplast [TaxId: 4558]}
Length = 188
Score = 24.6 bits (53), Expect = 8.3
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 35 DEAELAAMKARVREMEEEAEKLKQLQSEVDK 65
D+ +K E+ E + + L E +
Sbjct: 148 DDFLWERIKKSEAELLAEKKCVAHLTGEGNA 178
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 24.1 bits (52), Expect = 8.8
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 11 EEENFENGDHIENGDMEADQSKCTDEAELAAMKARVREMEEEAEKLKQLQSEVD 64
EE N E + + +K EA LAAM R++E ++ AE++++ + +
Sbjct: 85 EENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 95
Score = 23.6 bits (51), Expect = 9.5
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 106 EELESHFHGCGSVNRVTILCNKFDGHPKGFAYIEFADKDSVQTAMAMDESLFRGRQIKVN 165
EL G++ +L G + FAD S + + +D +GR +K++
Sbjct: 39 TELMQTLGSYGTI----VLVRINQGQ----MLVTFADSHSALSVLDVDGMKVKGRAVKIS 90
Query: 166 PK 167
Sbjct: 91 GP 92
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum
arcticum [TaxId: 87645]}
Length = 171
Score = 24.4 bits (52), Expect = 9.8
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 35 DEAELAAMKARVREMEEEAEKLKQL 59
D + + E+ EE ++ L
Sbjct: 145 DAFSQERINVTLNELLEEQNGVQHL 169
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.368
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 758,909
Number of extensions: 34267
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 109
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)