BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13537
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLT 133
+L L K V +I + P GV V D + YSAD ++++ SLGVL+S+LI F P LP K+
Sbjct: 230 RLQLNKVVREIKYS-PGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVR 288
Query: 134 AIEGLYIGTIDKLFLKFPSKWWPDSIQGYNFLWT 167
AI + K+FLKFP K+WP+ FL+
Sbjct: 289 AIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYA 322
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%)
Query: 92 VLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFLKFP 151
V VT DGT YSA ++L+TV L +L+ I F PPL KK+ AI L G I+K+ L+FP
Sbjct: 582 VQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFP 641
Query: 152 SKWWPDSIQGYNFL 165
++W +QG +F
Sbjct: 642 YRFWDSKVQGADFF 655
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%)
Query: 92 VLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFLKFP 151
V VT DGT YSA ++L+TV L +L+ I F PPL KK+ AI L G I+K+ L+FP
Sbjct: 570 VQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFP 629
Query: 152 SKWWPDSIQGYNFL 165
++W +QG +F
Sbjct: 630 YRFWDSKVQGADFF 643
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%)
Query: 92 VLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFLKFP 151
V VT DGT YSA ++L+TV L +L+ I F PPL KK+ AI L G I+K+ L+FP
Sbjct: 562 VQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFP 621
Query: 152 SKWWPDSIQGYNFL 165
++W +QG +F
Sbjct: 622 YRFWDSKVQGADFF 635
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLT 133
+L L K V +I + P GV V D + YSAD ++++ SLGVL+S+LI F P LP K+
Sbjct: 230 RLQLNKVVREIKYS-PGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVR 288
Query: 134 AIEGLYIGTIDKLFLKFPSKWWPDSIQGYNFLWT 167
AI + +FLKFP K+WP+ FL+
Sbjct: 289 AIYQFDMAVYTMIFLKFPRKFWPEGKGREFFLYA 322
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVL------KSNL---ITFVP 125
L L EV I E K V V C DGT Y+AD ++ITV VL + NL I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 126 PLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPD 157
PL P A + ++ G + K+ +F W +
Sbjct: 277 PLKPVIQDAFDKIHFGALGKVIFEFEECCWSN 308
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVL------KSNL---ITFVP 125
L L EV I E K V V C DGT Y+AD ++ITV VL + NL I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 126 PLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPD 157
PL P A + ++ G + K+ +F W +
Sbjct: 277 PLKPVIQDAFDKIHFGALGKVIFEFEECCWSN 308
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVL------KSNL---ITFVP 125
L L EV I E K V V C DGT Y+AD ++ITV VL + NL I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 126 PLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPD 157
PL P A + ++ G + K+ +F W +
Sbjct: 277 PLKPVIQDAFDKIHFGALGKVIFEFEECCWSN 308
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVL------KSNL---ITFVP 125
L L EV I E K V V C DGT Y+AD ++ITV VL + NL I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 126 PLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPD 157
PL P A + ++ G + K+ +F W +
Sbjct: 277 PLKPVIQDAFDKIHFGALGKVIFEFEECCWSN 308
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVL------KSNL---ITFVP 125
L L EV I E K V V C DGT Y+AD ++ITV VL + NL I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 126 PLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPD 157
PL P A + ++ G + K+ +F W +
Sbjct: 277 PLKPVIQDAFDKIHFGALGKVIFEFEECCWSN 308
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 102 YSADRILITVSLGVLKSN--LITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSI 159
Y D +L T+ LGVLK + FVPPLP K +A++ + G ++K+ L F +W S+
Sbjct: 445 YKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSV 504
Query: 160 QGYNFLWTDEDQKNLFKEIG 179
NLF +G
Sbjct: 505 -------------NLFGHVG 511
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
ME +S D I + +++ G +P+P + S W +P RGSY
Sbjct: 544 MENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSY 590
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 102 YSADRILITVSLGVLKSN--LITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSI 159
Y D +L T+ LGVLK + FVPPLP K +A++ + G ++K+ L F +W S+
Sbjct: 494 YKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSV 553
Query: 160 QGYNFLWTDEDQKNLFKEIG 179
NLF +G
Sbjct: 554 -------------NLFGHVG 560
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
ME +S D I + +++ G +P+P + S W +P RGSY
Sbjct: 593 MENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSY 639
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 102 YSADRILITVSLGVLKSN--LITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSI 159
Y D +L T+ LGVLK + FVPPLP K +A++ + G ++K+ L F +W S+
Sbjct: 445 YKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSV 504
Query: 160 QGYNFLWTDEDQKNLFKEIG 179
NLF +G
Sbjct: 505 -------------NLFGHVG 511
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
ME +S D I + +++ G +P+P + S W +P RGSY
Sbjct: 544 MENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSY 590
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 102 YSADRILITVSLGVLKSN--LITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSI 159
Y D +L T+ LGVLK + FVPPLP K +A++ + G ++K+ L F +W S+
Sbjct: 446 YKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSV 505
Query: 160 QGYNFLWTDEDQKNLFKEIG 179
NLF +G
Sbjct: 506 -------------NLFGHVG 512
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
ME +S D I + +++ G +P+P + S W +P RGSY
Sbjct: 545 MENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSY 591
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 102 YSADRILITVSLGVLKSN--LITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSI 159
Y D +L T+ LGVLK + FVPPLP K +A++ + G ++K+ L F +W S+
Sbjct: 445 YKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSV 504
Query: 160 QGYNFLWTDEDQKNLFKEIG 179
NLF +G
Sbjct: 505 -------------NLFGHVG 511
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
ME +S D I + +++ G +P+P + S W +P RGSY
Sbjct: 544 MENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSY 590
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 102 YSADRILITVSLGVLKSN--LITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSI 159
Y D +L T+ LGVLK + FVPPLP K +A++ + G ++K+ L F +W S+
Sbjct: 445 YKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSV 504
Query: 160 QGYNFLWTDEDQKNLFKEIG 179
NLF +G
Sbjct: 505 -------------NLFGHVG 511
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
ME +S D I + +++ G +P+P + S W +P RGSY
Sbjct: 544 MENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSY 590
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 102 YSADRILITVSLGVLKSN--LITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSI 159
Y D +L T+ LGVLK + FVPPLP K +A++ + G ++K+ L F +W S+
Sbjct: 616 YKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSV 675
Query: 160 QGYNFLWTDEDQKNLFKEIG 179
NLF +G
Sbjct: 676 -------------NLFGHVG 682
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
ME +S D I + +++ G +P+P + S W +P RGSY
Sbjct: 715 MENISDDVIVGRCLAILKGIFGSSA-VPQPKETVVSRWRADPWARGSY 761
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 102 YSADRILITVSLGVLKSN--LITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSI 159
Y D +L T+ LGVLK + FVPPLP K +A++ + G ++K+ L F +W S+
Sbjct: 498 YKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSV 557
Query: 160 QGYNFLWTDEDQKNLFKEIG 179
NLF +G
Sbjct: 558 -------------NLFGHVG 564
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
ME +S D I + +++ G +P+P + S W +P RGSY
Sbjct: 597 MENISDDVIVGRCLAILKGIFGSS-AVPQPKETVVSRWRADPWARGSY 643
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 47 SYREREREIEIFPSKQMPGQTPIDLSKKLLLKKEVTKIHWEDPKGVLVTCA----DGTQY 102
+Y +R EI + Q+P + +K+ V KI ++ V VT D +
Sbjct: 228 AYEKRFDEI-VGGMDQLPTSMYRAIEEKVKFNARVIKIQ-QNANQVTVTYQTPEKDTSSN 285
Query: 103 SADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPD 157
+AD +++ + + I F PPLPPKK A+ ++ + K+FL SK+W D
Sbjct: 286 TADYVIVCTTSRAARR--IQFEPPLPPKKQHALRSVHYRSGTKIFLTCSSKFWED 338
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 47 SYREREREIEIFPSKQMPGQTPIDLSKKLLLKKEVTKIHWEDPKGVLV--TCADGT-QYS 103
+Y +R EI + ++P D+ K+ +V KI D K +V T + T +
Sbjct: 228 AYEKRFDEI-VDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVT 286
Query: 104 ADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPD 157
AD +++ + ++ LI F PPL PKK A+ ++ + K+FL +K+W D
Sbjct: 287 ADYVIVCTTSRAVR--LIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWED 338
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 47 SYREREREIEIFPSKQMPGQTPIDLSKKLLLKKEVTKIHWEDPKGVLVTCADGTQ----Y 102
+Y +R EI + ++P + +K+ L V KI +D K V VT +
Sbjct: 241 AYEKRFDEI-VGGMDKLPTSMYQAIQEKVHLNARVIKIQ-QDVKEVTVTYQTSEKETLSV 298
Query: 103 SADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPD 157
+AD +++ + + I F PPLPPKK A+ ++ + K+FL K+W D
Sbjct: 299 TADYVIVCTTSRAARR--IKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWED 351
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 47 SYREREREIEIFPSKQMPGQTPIDLSKKLLLKKEVTKIHWEDPKGVLVT---CADGTQYS 103
+Y +R EI + ++P + +K+ L +V KI K +V + +
Sbjct: 228 AYEKRFDEI-VGGMDKLPTSMYRAIEEKVHLNAQVIKIQKNAEKVTVVYQTPAKEMASVT 286
Query: 104 ADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPD 157
AD +++ + + I F PPLPPKK A+ ++ + K+FL K+W D
Sbjct: 287 ADYVIVCTTSRATRR--IKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWED 338
>pdb|2IW5|B Chain B, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|B Chain B, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|B Chain B, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 235
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 89 PKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFL 148
PKG+ ++ D SA+ T L L L++ +++ I+ +KL
Sbjct: 64 PKGMFLSQEDVEAVSANATAATTVLRQLDMELVSV-----KRQIQNIKQTNSALKEKLDG 118
Query: 149 KFPSKWWPDSIQGYNFLWTDEDQ----------KNLFKEIGQVDGKPWVVGLTGFFASTE 198
P+ IQ N WT E+Q F+ I V G VV + FF +
Sbjct: 119 GIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 178
Query: 199 DPLTLLEV 206
+ EV
Sbjct: 179 RRFNIDEV 186
>pdb|2XAF|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 482
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 89 PKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFL 148
PKG+ ++ D SA+ T L L L++ +++ I+ +KL
Sbjct: 311 PKGMFLSQEDVEAVSANATAATTVLRQLDMELVSV-----KRQIQNIKQTNSALKEKLDG 365
Query: 149 KFPSKWWPDSIQGYNFLWTDEDQ----------KNLFKEIGQVDGKPWVVGLTGFFASTE 198
P+ IQ N WT E+Q F+ I V G VV + FF +
Sbjct: 366 GIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425
Query: 199 DPLTLLEV 206
+ EV
Sbjct: 426 RRFNIDEV 433
>pdb|2E1M|B Chain B, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 130
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 102 YSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWW 155
++ D ++T+ L+ + PP KK A+ + K+ L+F +WW
Sbjct: 6 WTGDLAIVTIPFSSLR--FVKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWW 57
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
Query: 71 LSKKLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPK 130
L + L V + W + ++ D + A R+++ V + + I++ PPLP +
Sbjct: 225 LGDDVFLNAPVRTVKWNESGATVLADGD-IRVEASRVILAVPPNLY--SRISYDPPLPRR 281
Query: 131 KLTAIEGLYIGTIDKLFLKFPSKWW-PDSIQGYNFLWTDEDQKNLFKEIGQVDGKPWVVG 189
+ + +G + K+ + + +W D + G F E + ++ D + +V
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGF-GASEVVQEVYDNTNHEDDRGTLVA 340
Query: 190 LTGFFASTEDPLTLLEVDA 208
F S E + E+ A
Sbjct: 341 ----FVSDEKADAMFELSA 355
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
Query: 71 LSKKLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPK 130
L + L V + W + ++ D + A R+++ V + + I++ PPLP +
Sbjct: 225 LGDDVFLNAPVRTVKWNESGATVLADGD-IRVEASRVILAVPPNLY--SRISYDPPLPRR 281
Query: 131 KLTAIEGLYIGTIDKLFLKFPSKWW-PDSIQGYNFLWTDEDQKNLFKEIGQVDGKPWVVG 189
+ + +G + K+ + + +W D + G F E + ++ D + +V
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGF-GASEVVQEVYDNTNHEDDRGTLVA 340
Query: 190 LTGFFASTEDPLTLLEVDA 208
F S E + E+ A
Sbjct: 341 ----FVSDEKADAMFELSA 355
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 4 LSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
LS ++ +A + + ++GPK EP S WG+ RG+Y
Sbjct: 353 LSAEERKATILASLARYLGPKA--EEPVVYYESDWGSEEWTRGAY 395
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
Query: 71 LSKKLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPK 130
L + L V + W + ++ D + A R+++ V + + I++ PPLP +
Sbjct: 225 LGDDVFLNAPVRTVKWNESGATVLADGD-IRVEASRVILAVPPNLY--SRISYDPPLPRR 281
Query: 131 KLTAIEGLYIGTIDKLFLKFPSKWW-PDSIQGYNFLWTDEDQKNLFKEIGQVDGKPWVVG 189
+ + +G + K+ + + +W D + G F E + ++ D + +V
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGF-GASEVVQEVYDNTNHEDDRGTLVA 340
Query: 190 LTGFFASTEDPLTLLEVDA 208
F S E + E+ A
Sbjct: 341 ----FVSDEKADAMFELSA 355
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
Query: 71 LSKKLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPK 130
L + L V + W + ++ D + A R+++ V + + I++ PPLP +
Sbjct: 225 LGDDVFLNAPVRTVKWNESGATVLADGD-IRVEASRVILAVPPNLY--SRISYDPPLPRR 281
Query: 131 KLTAIEGLYIGTIDKLFLKFPSKWW-PDSIQGYNFLWTDEDQKNLFKEIGQVDGKPWVVG 189
+ + +G + K+ + + +W D + G F E + ++ D + +V
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGF-GASEVVQEVYDNTNHEDDRGTLVA 340
Query: 190 LTGFFASTEDPLTLLEVDA 208
F S E + E+ A
Sbjct: 341 ----FVSDEKADAMFELSA 355
>pdb|1VPQ|A Chain A, Crystal Structure Of A Duf72 Family Protein (tm1631) From
Thermotoga Maritima Msb8 At 2.20 A Resolution
Length = 273
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 15/97 (15%)
Query: 96 CADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLY----IGTIDKLFLKF- 150
+ YS DR + L+++ ITFV PK + GL+ I T D + +F
Sbjct: 153 AVEFRHYSWDR---EETYEFLRNHGITFVVVDEPK----LPGLFPYRPITTTDYAYFRFH 205
Query: 151 --PSKWW-PDSIQGYNFLWTDEDQKNLFKEIGQVDGK 184
+W+ + + Y++L+++E+ K LF+++ ++ +
Sbjct: 206 GRNERWFEAEGEERYDYLYSEEELKTLFEDVVELSRR 242
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Query: 39 GTNPHFRGSYREREREIEIFPSKQMPGQTPIDLSKKLLLKKEVTKIHWEDPKGVLVTCAD 98
GT F + +ER+ + S Q+ Q L K+ L VT I D ++V +
Sbjct: 211 GTARIFSVTNGGQERKF-VGGSGQVSEQIMGLLGDKVKLSSPVTYIDQTD-DNIIVETLN 268
Query: 99 GTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWW 155
Y + +I+ +L + I F P LPP++ I+ L +G + K + + +W
Sbjct: 269 HEHYEC-KYVISAIPPILTAK-IHFKPELPPERNQLIQRLPMGAVIKCMVYYKEAFW 323
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,709,351
Number of Sequences: 62578
Number of extensions: 283884
Number of successful extensions: 627
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 46
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)