RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13537
(208 letters)
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace amines.
In lower eukaryotes such as aspergillus and in bacteria
the main role of amine oxidases is to provide a source
of ammonium. PAOs in plants, bacteria and protozoa
oxidase spermidine and spermine to an aminobutyral,
diaminopropane and hydrogen peroxide and are involved in
the catabolism of polyamines. Other members of this
family include tryptophan 2-monooxygenase, putrescine
oxidase, corticosteroid binding proteins and
antibacterial glycoproteins.
Length = 444
Score = 88.4 bits (219), Expect = 1e-20
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 70 DLSKKLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPP 129
L ++ L V I GV VT DG AD +++TV LGVLK I F+PPLP
Sbjct: 216 LLGGRVRLNTRVRSITKS-GDGVTVTTVDGRTIEADAVIVTVPLGVLKR--ILFLPPLPA 272
Query: 130 KKLTAIEGLYIGTIDKLFLKFPSKWWPDSIQGYNFLWTDEDQK 172
K AI L G++ K+FL+F + +WP++ + L TD +
Sbjct: 273 AKQEAIRNLGFGSVSKVFLEFETPFWPENGDLFGLLVTDGLSR 315
Score = 41.8 bits (98), Expect = 1e-04
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY-----REREREI 55
+E LS +++ ++ +R +GP+ +P+P L S W T+P+ RGSY + R
Sbjct: 345 LEDLSDEELLEAVLRDLRKLLGPED-VPDPVNFLVSDWHTDPYARGSYSYPPVGDDSRYR 403
Query: 56 EIFPSKQMPG 65
+ PG
Sbjct: 404 PALRTPVGPG 413
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 86.7 bits (215), Expect = 6e-20
Identities = 41/96 (42%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLT 133
+L L K V +I + GV V DG+ Y A ++++VSLGVL+S+LI F PPLP K+
Sbjct: 246 RLKLNKVVREISYS-KNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIE 304
Query: 134 AIEGLYIGTIDKLFLKFPSKWWPDSIQGYNFLWTDE 169
AI + K+FLKFP K+WP FL+ E
Sbjct: 305 AIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHE 340
Score = 38.5 bits (90), Expect = 0.001
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 2 EGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
E + +A+ M+++R GP IPE T L W +N F+GSY
Sbjct: 374 EQQPDSETKAEIMEVLRKMFGP--NIPEATDILVPRWWSNRFFKGSY 418
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 80.5 bits (199), Expect = 6e-18
Identities = 38/81 (46%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 77 LKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 136
L VTKI GV VT DGT + AD +I V LGVLK+N+I F P LP K AI
Sbjct: 215 LNHRVTKIV-RRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAIS 273
Query: 137 GLYIGTIDKLFLKFPSKWWPD 157
L +G +K+ L F S +WP+
Sbjct: 274 DLGVGIENKIALHFDSVFWPN 294
Score = 33.9 bits (78), Expect = 0.051
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 28 PEPTRCLHSSWGTNPHFRGSY 48
EP + L S WG++P+ G Y
Sbjct: 359 TEPVQYLVSRWGSDPNSLGCY 379
>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 71.0 bits (174), Expect = 2e-14
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 77 LKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLIT----FVPPLPPKKL 132
L ++VT+I W+ + V + ADG+ +AD +++TVSLGVLK+ + F PPLP K
Sbjct: 259 LGRKVTRIEWQ-DEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKT 317
Query: 133 TAIEGLYIGTIDKLFL 148
AI L G ++KLF+
Sbjct: 318 DAISRLGFGVVNKLFV 333
Score = 33.3 bits (76), Expect = 0.070
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 31 TRCLHSSWGTNPHFRGSY 48
+ L S WGT+P F GSY
Sbjct: 450 VKVLKSKWGTDPLFLGSY 467
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 68.0 bits (166), Expect = 2e-13
Identities = 30/70 (42%), Positives = 47/70 (67%)
Query: 90 KGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFLK 149
K V V+ ++G+++ D +LITV LG LK+ I F PPLP K ++I+ L G ++K+ L+
Sbjct: 972 KKVKVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLE 1031
Query: 150 FPSKWWPDSI 159
FP +W DS+
Sbjct: 1032 FPEVFWDDSV 1041
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 63.5 bits (154), Expect = 7e-12
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 91 GVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFLKF 150
GV+V A G ++ D +L TV LGVLK I F P LP +K AI+ L G ++K+ L F
Sbjct: 464 GVIVY-AGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLF 522
Query: 151 PSKWWPDSIQGYNFLWTDEDQKN---LFKEIGQVDGKPWVVGL 190
P +W I + L D + LF V G P ++ L
Sbjct: 523 PYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIAL 565
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 61.2 bits (148), Expect = 4e-11
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTA 134
+L +K V I + GV V A Y D +L TV LGVLK+ I FVP LP +KL
Sbjct: 393 ILYEKTVQTIRY-GSNGVKVI-AGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDC 450
Query: 135 IEGLYIGTIDKLFLKFPSKWWPDSIQGYNFLWTDEDQKN---LFKEIGQVDGKPWVVGL 190
I+ L G ++K+ + FP +W + + L D + + LF V G P ++ L
Sbjct: 451 IKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIAL 509
Score = 27.3 bits (60), Expect = 6.5
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 14 MKLIRHFVGPK-VTIPEPTRCLHSSWGTNPHFRGSY 48
+ ++R P+ + +P+P + + + WG +P GSY
Sbjct: 531 LHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSY 566
>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1.
Length = 738
Score = 60.7 bits (147), Expect = 6e-11
Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 79 KEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGL 138
K V I + + GV V A + AD +L TV LGVLK I F P LP +KL AI+ L
Sbjct: 373 KTVDTIKYGN-DGVEVI-AGSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRL 430
Query: 139 YIGTIDKLFLKFPSKWWPDSIQGYNFLWTDEDQKN---LFKEIGQVDGKPWVVGLTGFFA 195
G ++K+ + FPS +W + + + L +++ LF V G P +V L A
Sbjct: 431 GFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEA 490
Query: 196 S----TEDPLTLL 204
+ DP TLL
Sbjct: 491 AQRFENTDPSTLL 503
Score = 31.4 bits (71), Expect = 0.30
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 14 MKLIRHFVGPK-VTIPEPTRCLHSSWGTNPHFRGSY 48
+ ++R PK + +P+P + + + WG++P GSY
Sbjct: 507 LSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSY 542
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 57.4 bits (139), Expect = 7e-10
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 70 DLSKKLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPP 129
L ++LL + V +I +D GV VT D QY AD +L+T+ L +L I F P LP
Sbjct: 218 QLGTRILLNEPVRRID-QDGDGVTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLLPA 274
Query: 130 KKLTAIEGLYIGTIDKLFLKFPSKWWPDS 158
+ A +G+ G+ K+ + F +W ++
Sbjct: 275 EYKQAAKGVPYGSATKIGVAFSRPFWEEA 303
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 31.1 bits (70), Expect = 0.44
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 4 LSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSYRER 51
L+ +++Q ++ + +G IPEP + L + N +F +Y ER
Sbjct: 578 LTTEKLQLTSVTSLCMLIGNATVIPEP-QTLFHYYNVNVNFHSNYNER 624
>gnl|CDD|216086 pfam00728, Glyco_hydro_20, Glycosyl hydrolase family 20, catalytic
domain. This domain has a TIM barrel fold.
Length = 335
Score = 30.4 bits (69), Expect = 0.59
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 6/56 (10%)
Query: 51 REREIEIFPSKQMPG------QTPIDLSKKLLLKKEVTKIHWEDPKGVLVTCADGT 100
R IE+ P MPG + +L K + P G L T
Sbjct: 80 AARGIEVIPEIDMPGHARAALKAYPELGCKPEDTSWYVSVQVGPPNGTLNPGNPKT 135
>gnl|CDD|236887 PRK11259, solA, N-methyltryptophan oxidase; Provisional.
Length = 376
Score = 30.2 bits (69), Expect = 0.71
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILIT 110
LL + VT I D GV VT ADGT Y A +++++
Sbjct: 166 LLFNEPVTAIE-ADGDGVTVTTADGT-YEAKKLVVS 199
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 30.2 bits (69), Expect = 0.81
Identities = 40/163 (24%), Positives = 59/163 (36%), Gaps = 50/163 (30%)
Query: 3 GLSLDQIQAD----------TMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSYRERE 52
G+ D+I AD K IR+ + R +E
Sbjct: 161 GVPCDEISADWAAQRIKGLSLGKAIRNALRRS-------------------LGLKRRNKE 201
Query: 53 RE---IEIF--PSKQMPGQ-------TPIDLSKKLLLKKEVTKIHWEDPKG---VLVTCA 97
E IE F P K PGQ L K++L +V +H + V+V
Sbjct: 202 VETSLIEEFRYP-KLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDT 260
Query: 98 DG--TQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGL 138
DG +AD+++ ++ L L + L PP PP+ A GL
Sbjct: 261 DGTEETVTADQVISSMPLRELVAAL---DPPPPPEVRAAAAGL 300
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 29.9 bits (68), Expect = 1.0
Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 19/86 (22%)
Query: 76 LLKKE-VTKIH----WEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPK 130
LLKK V I + DP V VT D +AD I+I G S +PP P
Sbjct: 103 LLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIAT--G---SR--PRIPPGPG- 154
Query: 131 KLTAIEGLYIGTIDKLF--LKFPSKW 154
I+G I L+ P
Sbjct: 155 ----IDGARILDSSDALFLLELPKSL 176
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 29.7 bits (68), Expect = 1.1
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 74 KLLLKKEVTKIH----WEDPKGVLVTCADGTQYSADRILITV 111
L V I + D V V +G +Y+AD ILI
Sbjct: 101 NGLENNGVDLIEGFARFVDAHTVEV---NGERYTADHILIAT 139
>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG). NOG1 is a
nucleolar GTP-binding protein present in eukaryotes
ranging from trypanosomes to humans. NOG1 is
functionally linked to ribosome biogenesis and found in
association with the nuclear pore complexes and
identified in many preribosomal complexes. Thus, defects
in NOG1 can lead to defects in 60S biogenesis. The S.
cerevisiae NOG1 gene is essential for cell viability,
and mutations in the predicted G motifs abrogate
function. It is a member of the ODN family of
GTP-binding proteins that also includes the bacterial
Obg and DRG proteins.
Length = 167
Score = 28.7 bits (65), Expect = 1.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 169 EDQKNLFKEIGQVDGKPWVVGLT 191
E+Q +LFKEI + KP +V L
Sbjct: 98 EEQLSLFKEIKPLFNKPVIVVLN 120
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase
inhibitor.
Length = 541
Score = 28.7 bits (64), Expect = 2.1
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 14/47 (29%)
Query: 88 DPKGVLVTCADGT--------------QYSADRILITVSLGVLKSNL 120
DP VLV ADGT S DRI+I V GV + N+
Sbjct: 227 DPSEVLVVAADGTGNFSTITDAINFAPNNSNDRIIIYVREGVYEENV 273
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 28.7 bits (65), Expect = 2.4
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILIT 110
K+ + V + +D V G + AD +++
Sbjct: 124 KIRTRTRVLSVEKDDDGRFRVDTDGGEELEADSLVLA 160
>gnl|CDD|119337 cd06569, GH20_Sm-chitobiase-like, The chitobiase of Serratia
marcescens is a beta-N-1,4-acetylhexosaminidase with a
glycosyl hydrolase family 20 (GH20) domain that
hydrolyzes the beta-1,4-glycosidic linkages in oligomers
derived from chitin. Chitin is degraded by a two step
process: i) a chitinase hydrolyzes the chitin to
oligosaccharides and disaccharides such as
di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase
then further degrades these oligomers into monomers. The
GH20 hexosaminidases are thought to act via a catalytic
mechanism in which the catalytic nucleophile is not
provided by solvent or the enzyme, but by the substrate
itself.
Length = 445
Score = 28.4 bits (64), Expect = 3.1
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 14/49 (28%)
Query: 31 TRCLHSSWGTNPHFRGS---------YRE-----REREIEIFPSKQMPG 65
T CL G+ P S Y E + R IE+ P MPG
Sbjct: 73 TTCLLPQLGSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPG 121
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 28.2 bits (64), Expect = 3.7
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 70 DLSKKLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRIL 108
D + +EV K+ GV+V G + AD +L
Sbjct: 228 DSGVTIRHNEEVEKVE-GGDDGVIVHLKSGKKIKADCLL 265
>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide. Glutathione-disulfide
reductase regenerates reduced glutathione from oxidized
glutathione (glutathione disulfide) + NADPH. This model
represents one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely
related to trypanothione reductase, and separate models
are built so each of the three can describe proteins
with conserved function. This model describes
glutathione-disulfide reductases of plants and some
bacteria, including cyanobacteria [Energy metabolism,
Electron transport].
Length = 446
Score = 27.9 bits (62), Expect = 4.1
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 15/86 (17%)
Query: 71 LSKKLLLKKEVTKIHWE----DPKGVLVTCADGTQYSADRILITVSLGVLKSNL------ 120
L +K L + P V V A G Y+A++ILI V K L
Sbjct: 95 LYRKGLANAGAELLDGRAELVGPNTVEVL-ASGKTYTAEKILIAVGGRPPKPALPGHELG 153
Query: 121 IT----FVPPLPPKKLTAIEGLYIGT 142
IT F P PK + G YI
Sbjct: 154 ITSNEAFHLPTLPKSILIAGGGYIAV 179
>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1). Arfrp1
(Arf-related protein 1), formerly known as ARP, is a
membrane-associated Arf family member that lacks the
N-terminal myristoylation motif. Arfrp1 is mainly
associated with the trans-Golgi compartment and the
trans-Golgi network, where it regulates the targeting of
Arl1 and the GRIP domain-containing proteins, golgin-97
and golgin-245, onto Golgi membranes. It is also
involved in the anterograde transport of the vesicular
stomatitis virus G protein from the Golgi to the plasma
membrane, and in the retrograde transport of TGN38 and
Shiga toxin from endosomes to the trans-Golgi network.
Arfrp1 also inhibits Arf/Sec7-dependent activation of
phospholipase D. Deletion of Arfrp1 in mice causes
embryonic lethality at the gastrulation stage and
apoptosis of mesodermal cells, indicating its importance
in development.
Length = 168
Score = 27.3 bits (61), Expect = 4.4
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 110 TVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTID--KLFLKF 150
T L K+ L P K+T GL IGTI+ K L F
Sbjct: 13 TTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMF 55
>gnl|CDD|238479 cd00978, chitosanase_glyco_hydro_46, Glycosyl hydrolase family 46
chitosanase domain. This family are composed of the
chitosanase enzymes which hydrolyzes chitosan, a
biopolymer of beta (1,4)-linked -D-glucosamine (GlcN)
residues produced by partial or full deacetylation of
chitin. Chitosanases play a role in defense against
pathogens such as fungi and are found in microorganisms,
fungi, viruses, and plants. Microbial chitosanases who
members are the most prevalent can be divided into 3
subclasses based on the specificity of the cleavage
positions for partial acetylated chitosan. Subclass I
chitosanases such as N174 can split GlcN-GlcN and
GlcNAc-GlcN linkages, whereas subclass II chitosanases
such as Bacillus sp. no. 7-M can cleave only GlcN-GlcN
linkages. Subclass III chitosanases such as MH-K1
chitosanase are the most versatile and can split both
GlcN-GlcN and GlcN-GlcNAc linkages.
Length = 221
Score = 27.4 bits (61), Expect = 4.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 182 DGKPWVVGLTGFFASTEDPLTLLEV 206
DG+ + G+ GF T D L L+E
Sbjct: 36 DGRGYTAGIIGFCTGTGDGLELVEA 60
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 27.8 bits (62), Expect = 5.3
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 80 EVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPL 127
EV++I E KGV V +DG AD ++ SN +
Sbjct: 246 EVSQILVEGGKGVGVRTSDGENIEADAVV---------SNADPALLAR 284
>gnl|CDD|115510 pfam06858, NOG1, Nucleolar GTP-binding protein 1 (NOG1). This
family represents a conserved region of approximately 60
residues in length within nucleolar GTP-binding protein
1 (NOG1). In S. cerevisiae, the NOG1 gene has been shown
to be essential for cell viability, suggesting that NOG1
may play an important role in nucleolar functions.
Family members include eukaryotic, bacterial and
archaeal proteins.
Length = 58
Score = 25.6 bits (57), Expect = 5.3
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 169 EDQKNLFKEIGQV-DGKPWVVGLT 191
E+Q +LFKEI + KP +V L
Sbjct: 32 EEQLHLFKEIKPLFKNKPVIVVLN 55
>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding.
Length = 153
Score = 26.4 bits (59), Expect = 7.2
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 80 EVTKIHWEDPKGVLVTCADGTQYSADRILITV 111
EV + G VT ADG AD +++
Sbjct: 120 EVVDLR-PRGGGYTVTLADGATLRADAVVLAT 150
>gnl|CDD|206020 pfam13849, Y_phosphatase_m, Myotubularin Y_phosphatase-like. This
short region is highly conserved and seems to be common
to many myotubularin proteins with protein tyrosine
pyrophosphate activity. As the family has a number of
highly conserved residues such as histidine, cysteine,
glutamine and aspartate, it is possible that this
represents a catalytic core of the active enzymatic part
of the proteins.
Length = 55
Score = 24.8 bits (55), Expect = 7.3
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 91 GVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFLKF 150
VLV C+DG DR SL + L+ L P IEG + I+K +L F
Sbjct: 2 SVLVHCSDGW----DRTSQLSSL----AQLL-----LDP-YYRTIEGFQV-LIEKEWLSF 46
>gnl|CDD|107055 PHA01733, PHA01733, hypothetical protein.
Length = 153
Score = 26.4 bits (58), Expect = 7.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 152 SKWWPDSIQGYNFLWTDEDQKNLF 175
+KWW + Y+ LW D++NL
Sbjct: 94 AKWWLPKSRNYDLLWNIVDKRNLV 117
>gnl|CDD|132490 TIGR03449, mycothiol_MshA, D-inositol-3-phosphate
glycosyltransferase. Members of this protein family,
found exclusively in the Actinobacteria, are MshA, the
glycosyltransferase of mycothiol biosynthesis. Mycothiol
replaces glutathione in these species.
Length = 405
Score = 27.0 bits (60), Expect = 9.1
Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 107 ILITVSLGVLKSNLITFVPPLPPKKLTAI 135
I + LG+ ++ + F+PP PP++L +
Sbjct: 273 IELAAELGI--ADRVRFLPPRPPEELVHV 299
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.434
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,848,139
Number of extensions: 1015747
Number of successful extensions: 954
Number of sequences better than 10.0: 1
Number of HSP's gapped: 948
Number of HSP's successfully gapped: 41
Length of query: 208
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 115
Effective length of database: 6,812,680
Effective search space: 783458200
Effective search space used: 783458200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)