RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13537
(208 letters)
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 133 bits (335), Expect = 5e-37
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 5/136 (3%)
Query: 62 QMPGQTPIDLSKKLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLI 121
+ ++ + +L L K V +I + P GV V D + YSAD ++++ SLGVL+S+LI
Sbjct: 218 KTDDKSGKIVDPRLQLNKVVREIKY-SPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLI 276
Query: 122 TFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSIQGYNFLWTDEDQK--NLFKEIG 179
F P LP K+ AI + K+FLKFP K+WP+ FL+ + +++E
Sbjct: 277 QFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFE 336
Query: 180 QVDGKPWVVGLTGFFA 195
+ V L
Sbjct: 337 KQYPDANV--LLVTVT 350
Score = 51.4 bits (123), Expect = 5e-08
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
+E S +Q +A+ M+++R K +P+ T L W ++ ++G++
Sbjct: 357 IEQQSDEQTKAEIMQVLRKMFPGK-DVPDATDILVPRWWSDRFYKGTF 403
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 111 bits (280), Expect = 3e-29
Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 6/126 (4%)
Query: 70 DLSKKLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPP 129
L + L V + W + G V + A R+++ V + I++ PPLP
Sbjct: 224 ALGDDVFLNAPVRTVKW-NESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPR 280
Query: 130 KKLTAIEGLYIGTIDKLFLKFPSKWWPDSIQGYNFLWTDEDQKNLFKEIGQVDGKPWVVG 189
++ + +G + K+ + + +W + E + ++ + +
Sbjct: 281 RQHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGFGASEVVQEVY-DNTNHEDDRGT-- 337
Query: 190 LTGFFA 195
L F +
Sbjct: 338 LVAFVS 343
Score = 48.6 bits (116), Expect = 3e-07
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
M LS ++ +A + + ++GPK EP S WG+ RG Y
Sbjct: 350 MFELSAEERKATILASLARYLGPKA--EEPVVYYESDWGSEEWTRGCY 395
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 111 bits (278), Expect = 1e-28
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 70 DLSKKLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPP 129
L ++ L++ V I + VLV + Y A ++ + + I F PPLP
Sbjct: 224 LLGDRVKLERPVIYIDQ-TRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPM 280
Query: 130 KKLTAIEGLYIGTIDKLFLKFPSKWWPDSIQGYNFLWTDED 170
+ I + +G++ K + + +W + E+
Sbjct: 281 MRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEE 321
Score = 47.9 bits (114), Expect = 7e-07
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
+ L+ ++ +L +G EP +W + G Y
Sbjct: 352 LARLTKEERLKKLCELYAKVLGSLE-ALEPVHYEEKNWCEEQYSGGCY 398
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 107 bits (268), Expect = 2e-27
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 71 LSKKLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNL---------I 121
L L EV I E K V V C DGT Y+AD ++ITV VL ++ I
Sbjct: 213 PQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRI 272
Query: 122 TFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSIQGYNFLWTDEDQ 171
F PPL P A + ++ G + K+ +F W + L ++
Sbjct: 273 EFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNE 322
Score = 45.6 bits (107), Expect = 4e-06
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSYREREREIEIFPS 60
M+ L + + D M+ I + P + S+W +P+ RG+Y S
Sbjct: 406 MKCLDSEDV-IDGMRPIENIANA--NKPVLRNIIVSNWTRDPYSRGAY-----------S 451
Query: 61 KQMPGQTPIDLSKKLLLKKEVTKIHW 86
PG P+D+ + + ++I +
Sbjct: 452 ACFPGDDPVDMV-VAMSNGQDSRIRF 476
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 103 bits (256), Expect = 8e-26
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 11/138 (7%)
Query: 65 GQTPIDLSKKL--LLKKEVTKIHWEDPKGVLV------TCADGTQYSADRILITVSLGVL 116
P+ L++ L L V ++ + G V + + Y D +L T+ LGVL
Sbjct: 401 SCVPVALAEGLDIKLNTAVRQVRY-TASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVL 459
Query: 117 KSN--LITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSIQGYNFLWTDEDQKNL 174
K + FVPPLP K +A++ + G ++K+ L F +W S+ + + + +
Sbjct: 460 KQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGE 519
Query: 175 FKEIGQVDGKPWVVGLTG 192
+ P ++ L
Sbjct: 520 LFLFWNLYKAPILLALVA 537
Score = 50.3 bits (119), Expect = 1e-07
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
ME +S D I + +++ G +P+P + S W +P RGSY
Sbjct: 544 MENISDDVIVGRCLAILKGIFGSSA-VPQPKETVVSRWRADPWARGSY 590
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 101 bits (252), Expect = 2e-25
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 19/138 (13%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTA 134
+ L+ VT I V VT DG + A +++ + + I F P LP ++ +
Sbjct: 220 IRLQTVVTGIDQ-SGDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSV 276
Query: 135 IEGLYIGTIDKLFLKFPSKWWPDSIQG---YNFLWTDEDQKNLFKEIGQVDGKPWVVGLT 191
IE + G K+ + G + L+ +V + L
Sbjct: 277 IEEGHGGQGLKILIHVRGAEAGIECVGDGIFPTLYDY----------CEVSESERL--LV 324
Query: 192 GFFASTE-DPLTLLEVDA 208
F S DP + V
Sbjct: 325 AFTDSGSFDPTDIGAVKD 342
Score = 30.9 bits (70), Expect = 0.30
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 29 EPTRCLHSSWGTNPHFRGSY 48
E + W +P F G +
Sbjct: 352 EVLGIDYHDWIADPLFEGPW 371
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 101 bits (253), Expect = 2e-25
Identities = 20/140 (14%), Positives = 48/140 (34%), Gaps = 6/140 (4%)
Query: 60 SKQMPGQTPIDLSKKLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSN 119
+++ + + V + + VT DG ++ A R++ T+ L VL +
Sbjct: 258 ARRFWEEAAGTGRLGYVFGCPVRSVVN-ERDAARVTARDGREFVAKRVVCTIPLNVLST- 315
Query: 120 LITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSIQGYNFLWTDEDQKNLFKEIG 179
I F P L ++++A++ ++ K+ + +K + +
Sbjct: 316 -IQFSPALSTERISAMQAGHVSMCTKVHAEVDNKDMRSWT---GIAYPFNKLCYAIGDGT 371
Query: 180 QVDGKPWVVGLTGFFASTED 199
G +V +
Sbjct: 372 TPAGNTHLVCFGNSANHIQP 391
Score = 41.5 bits (97), Expect = 1e-04
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
+ D+ +T+K + P R + +W + +G++
Sbjct: 386 ANHIQPDEDVRETLKAVGQL-APGT--FGVKRLVFHNWVKDEFAKGAW 430
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 100 bits (250), Expect = 5e-25
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 9/137 (6%)
Query: 65 GQTPIDLSKKL--LLKKEVTKIHWEDP-----KGVLVTCADGTQYSADRILITVSLGVLK 117
P+ L++ L L V ++ + + + Y D +L T+ LGVLK
Sbjct: 572 SCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLK 631
Query: 118 SN--LITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSIQGYNFLWTDEDQKNLF 175
+ FVPPLP K +A++ + G ++K+ L F +W S+ + + + +
Sbjct: 632 QQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGEL 691
Query: 176 KEIGQVDGKPWVVGLTG 192
+ P ++ L
Sbjct: 692 FLFWNLYKAPILLALVA 708
Score = 48.1 bits (113), Expect = 8e-07
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
ME +S D I + +++ G +P+P + S W +P RGSY
Sbjct: 715 MENISDDVIVGRCLAILKGIFGSSA-VPQPKETVVSRWRADPWARGSY 761
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 89.9 bits (223), Expect = 2e-21
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 70 DLSKKLLLKKEVTKIHWEDPKGVLVTC----ADGTQYSADRILITVSLGVLKSNLITFVP 125
D+ K+ +V KI + + V V + +AD +++ + ++ I F P
Sbjct: 250 DIQDKVHFNAQVIKIQQ-NDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRL--IKFNP 306
Query: 126 PLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSIQGYNFLWTDE 169
PL PKK A+ ++ + K+FL +K+W D TD
Sbjct: 307 PLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDL 350
Score = 31.4 bits (71), Expect = 0.22
Identities = 5/50 (10%), Positives = 11/50 (22%), Gaps = 2/50 (4%)
Query: 1 MEGLSLDQIQADTMKLIR--HFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
+ L + H + K + W + + G
Sbjct: 381 FQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGI 430
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 78.0 bits (192), Expect = 3e-17
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 72 SKKLLLKKEVTKIHWEDPKGVLVTCADG---TQYSADRILITVSLGVLKSNLITFVPPLP 128
+ ++ EVT + +GV V G +AD + T+ ++ LP
Sbjct: 251 TDNIVFGAEVTSMKN-VSEGVTVEYTAGGSKKSITADYAICTIPPHLVG----RLQNNLP 305
Query: 129 PKKLTAIEGLYIGTIDKLFLKFPSKWWPDSIQGYNFL-WTDED 170
LTA++ + KL +++ +WW + Y TD+D
Sbjct: 306 GDVLTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNTDKD 348
Score = 39.5 bits (92), Expect = 4e-04
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
E L+ Q A + G K + + SW + ++
Sbjct: 379 FESLTHRQRLAKAIAEGSEIHGEKY-TRDISSSFSGSWRRTKYSESAW 425
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 130
Score = 65.7 bits (160), Expect = 3e-14
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 97 ADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWP 156
A ++ D ++T+ L+ + PP KK A+ + K+ L+F +WW
Sbjct: 1 AATQTWTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWE 58
Query: 157 -DSIQGYNFLWTDED 170
L
Sbjct: 59 FTEADWKRELDAIAP 73
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 1e-06
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 35/117 (29%)
Query: 41 NP-----HFRGSYREREREI-EIFPSKQMPGQTPID---LSKKLL--LKKEVTKIHWEDP 89
NP HF G E+ + I E + + M +T +D ++K+ + + T +
Sbjct: 1668 NPVNLTIHFGG---EKGKRIRENYSA--MIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 90 KGVLVTCADGTQYS--ADRILITVSLG---VLKSNLITFVPPLPPKKLTAIEGLYIG 141
KG+L TQ++ A L + LKS + +P A G +G
Sbjct: 1723 KGLL----SATQFTQPA---LTLMEKAAFEDLKSKGL-----IPADATFA--GHSLG 1765
Score = 29.2 bits (65), Expect = 1.2
Identities = 35/213 (16%), Positives = 60/213 (28%), Gaps = 59/213 (27%)
Query: 2 EGLSLDQIQADTMKLIRHFVG------PKVTIPEPTRCLHSSWGTNPHFRGSYREREREI 55
EG + D +L+ F+G + + + L+ F Y +I
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT---EFENCYL-EGNDI 101
Query: 56 EIFPSKQMPGQTPIDLSKKLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGV 115
+ ++ + L K KE+ K + +A RI+
Sbjct: 102 HALAA-KLLQENDTTLVK----TKELIKNY----------------ITA-RIMAK----- 134
Query: 116 LKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSIQGYNFLWTDEDQKNLF 175
F A+ G +L F QG + +E + L+
Sbjct: 135 -----RPFDKKSNSALFRAVGE---GNA-QLVAIFGG-------QGNTDDYFEELRD-LY 177
Query: 176 KEIGQVDGKPWVVGLTGFFASTEDPLTLLEVDA 208
+ V L F A T L +DA
Sbjct: 178 Q-----TYHVLVGDLIKFSAETLSELIRTTLDA 205
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 34.2 bits (77), Expect = 0.022
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 71 LSKKLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILI-TVSLG 114
L ++++ + + ++ + DP G + T + I TV G
Sbjct: 330 LRDQIVMGQRMVRLEYYDP-GRDGHHGELTGPGGPAVAIQTVPEG 373
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 33.9 bits (78), Expect = 0.028
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNL-ITFVPPLPPKKL 132
K+L +KEV +I+ E+ K V D +YS D + V + + + K++
Sbjct: 205 KILTRKEVVEINIEEKK---VYTRDNEEYSFDVAISNVGVRETVKLIGRDYFDRDYLKQV 261
Query: 133 TAIE-----GLYIGT 142
+IE +
Sbjct: 262 DSIEPSEGIKFNLAV 276
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 33.5 bits (77), Expect = 0.035
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILI 109
+ K + + +D + V + +DGT+ A+ +I
Sbjct: 113 RYHTSKCLVGLS-QDSETVQMRFSDGTKAEAN-WVI 146
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 33.7 bits (75), Expect = 0.035
Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 3/70 (4%)
Query: 86 WEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDK 145
D V +L L P + +TAI L++ K
Sbjct: 422 SGFEHAASQNLGDAGLGLETHTYNQVYPPLL---LSDSSPAANARIVTAIGQLHMARSSK 478
Query: 146 LFLKFPSKWW 155
+F +
Sbjct: 479 VFATVKTAAL 488
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.040
Identities = 28/176 (15%), Positives = 52/176 (29%), Gaps = 35/176 (19%)
Query: 34 LHSSWGTNPHFRGSYREREREIEIFPSKQMPGQTPIDLSKKLLLKKEV-TKIHWE--DPK 90
+ +W + + + R I+ + + + LL+ V W +
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYENCLLVLLNVQNAKAWNAFNLS 265
Query: 91 -GVLVTCAD-----------GTQYSADRILITV----SLGVLKSNLITFVPPLPPKKLTA 134
+L+T T S D +T+ +L L LP + LT
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT- 324
Query: 135 IEGLYIGTIDKLFLKFPSKW--WPD--------SIQ-GYNFLWTDEDQKNLFKEIG 179
+ I + + W W I+ N L E +K +F +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK-MFDRLS 379
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 33.3 bits (76), Expect = 0.049
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 78 KKEVTKIHWEDPKGVLVTCADGTQYSADRILIT 110
+ V + +E+ ADG + A+R +
Sbjct: 184 QGRVVTLIFENNDVKGAVTADGKIWRAERTFLC 216
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 181
Score = 32.6 bits (74), Expect = 0.051
Identities = 5/48 (10%), Positives = 16/48 (33%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
+ + ++ ++ G ++ + SW +P+ G
Sbjct: 51 WDSFDDAERYGYALENLQSVHGRRIEVFYTGAGQTQSWLRDPYACGEA 98
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 32.6 bits (75), Expect = 0.075
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 77 LKKEVTKIHWEDPKGVLVTCADGTQYSADRILI 109
K VT+ ED GV V DG+ S D +LI
Sbjct: 144 FGKRVTRCE-EDADGVTVWFTDGSSASGD-LLI 174
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 32.6 bits (75), Expect = 0.081
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 70 DLSKKLLLKKEVTKIHWEDPKGV-LVTCADGTQYSADRILITVSLGVL 116
D+ K VT + + + VT + + R LI+ + G L
Sbjct: 101 DVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTC-RFLIS-ATGPL 146
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 32.5 bits (75), Expect = 0.093
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 70 DLSKKLLLKKEVTKIHWEDPKGV-LVTCADGTQYSADRILITVSLGVL 116
DL + VT +++ V G + A R LI + G L
Sbjct: 108 DLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRA-RYLIM-ASGQL 153
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 32.1 bits (74), Expect = 0.11
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILIT 110
K+ V I +E+ + V G + ++I
Sbjct: 150 KIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIA 186
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 32.2 bits (74), Expect = 0.12
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 70 DLSKKLLLKKEVTKIHWEDPKGV-LVTCADGTQYSADRILITVSLGVL 116
DL + + VT ++ V G + SA R L+ + G L
Sbjct: 113 DLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSA-RFLVV-AAGPL 158
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 31.1 bits (71), Expect = 0.25
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 28/101 (27%)
Query: 55 IEIFPSKQM---PGQTPI---DLSKKLL-----------LKKEVTKIHWEDPKGVLVTCA 97
++P K + G + DL + L L + VTK D
Sbjct: 54 AALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTN 113
Query: 98 DGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGL 138
G Y + +LI LG + P+KL + +
Sbjct: 114 TGNVYRSRAVLIAAGLGAFE-----------PRKLPQLGNI 143
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 30.9 bits (70), Expect = 0.26
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILIT 110
+L K+V ++ D + +V DG+Q + ++ LI
Sbjct: 107 VLTGKKVVQL---DVRDNMVKLNDGSQITYEKCLIA 139
Score = 27.8 bits (62), Expect = 2.7
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGV 115
K++ V + +L+ DG + D I+ ++G+
Sbjct: 242 KVMPNAIVQSVGVSS-GKLLIKLKDGRKVETDHIV--AAVGL 280
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 30.9 bits (71), Expect = 0.28
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 73 KKLLLKKEVTKIH----WEDPKGVLVTCADGTQYSADRILITV 111
+ L K + I + + G +Y+A ILI
Sbjct: 115 QNNLTKSHIEIIRGHAAFTSDPKPTIE-VSGKKYTAPHILIAT 156
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 30.6 bits (70), Expect = 0.30
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 14/78 (17%)
Query: 45 RGSYRERE-REIEIFPSKQMPGQTPIDLSKKL-----------LLKKEVTKIHWEDPKGV 92
+ R R + F ++ G P + + +K V I +
Sbjct: 37 NNTNRNRVTQNSHGFITR--DGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGLF 94
Query: 93 LVTCADGTQYSADRILIT 110
+ D T+Y A+R+L+
Sbjct: 95 EIVTKDHTKYLAERVLLA 112
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 30.5 bits (70), Expect = 0.31
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 73 KKLLLKKEVTKIH----WEDPKGVLVTCADGTQYSADRILITV 111
+K L + P V + A G +A+RI+I V
Sbjct: 100 RKGLANAGAEILDTRAELAGPNTVKLL-ASGKTVTAERIVIAV 141
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 30.6 bits (70), Expect = 0.35
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILI-TVSLGVLKSNLITFVPPLP 128
K++ + T I DP LVT G + ++++I + S+ +P
Sbjct: 78 KVITSEFATSI---DPNNKLVTLKSGEKIKYEKLIIASGSI--------ANKIKVP 122
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 30.6 bits (70), Expect = 0.38
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILIT 110
LL +VT I + V +DG DR+++
Sbjct: 77 LLGGTQVTAI---NRDRQQVILSDGRALDYDRLVLA 109
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 30.2 bits (69), Expect = 0.44
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 26/101 (25%)
Query: 55 IEIFPSKQM---PGQTPI---DLSKKLL-----------LKKEVTKIHWEDPKGVLVTCA 97
++P K + G + DL K L+ L + + E VT +
Sbjct: 45 TALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREG-DLFKVTTS 103
Query: 98 DGTQYSADRILITVSLGVLKSNLITFVP-PLPPKKLTAIEG 137
G Y+A ++I +G F P + EG
Sbjct: 104 QGNAYTAKAVIIAAGVG-------AFEPRRIGAPGEREFEG 137
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 30.2 bits (69), Expect = 0.52
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 73 KKLLLKKEVTKIH----WEDPKGVLVTCADGTQ-YSADRILITV 111
+ L K+V I+ + D +L G + +A +I V
Sbjct: 115 RVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAV 158
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 29.9 bits (68), Expect = 0.56
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILIT 110
+ L EV + DP V DG+ +++
Sbjct: 82 MKLGAEVVSL---DPAAHTVKLGDGSAIEYGKLIWA 114
Score = 28.7 bits (65), Expect = 1.3
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVL 116
L + I + K V DG+ AD ++ V +G++
Sbjct: 211 LRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVI--VGIGIV 250
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 29.8 bits (68), Expect = 0.57
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 73 KKLLLKKEVTKIH----WEDPKGVLVTCADGTQYSADRILITV 111
++ L V + D + ++ G + SA++ILI
Sbjct: 121 REGLQNSNVHIYESRAVFVDEHTLELS-VTGERISAEKILIAT 162
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 29.8 bits (68), Expect = 0.59
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 76 LLKKEVTKIHWEDPKGVLVTCADGTQYSADRILIT 110
L+ + I D +G + A GT +++
Sbjct: 74 LISDRMVSI---DREGRKLLLASGTAIEYGHLVLA 105
Score = 27.9 bits (63), Expect = 2.4
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVL 116
+ T+I E + V +DG D ++ V +GV+
Sbjct: 201 MHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVV--VGVGVI 240
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 29.4 bits (67), Expect = 0.66
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 15/77 (19%)
Query: 45 RGSYRERE-REIEIFPSKQMPGQTPIDLSKKL-----------LLKKEVTKIHWEDPKGV 92
G R R F G+ P ++ + ++ VT
Sbjct: 33 AGERRNRFASHSHGFLG--QDGKAPGEIIAEARRQIERYPTIHWVEGRVTDAKGSFG-EF 89
Query: 93 LVTCADGTQYSADRILI 109
+V G + +A R+++
Sbjct: 90 IVEIDGGRRETAGRLIL 106
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 29.9 bits (68), Expect = 0.66
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILIT 110
LL DP+ V +DG +++
Sbjct: 76 WLLGVTAQSF---DPQAHTVALSDGRTLPYGTLVLA 108
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 29.8 bits (68), Expect = 0.70
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 73 KKLLLKKEVTKIH----WEDPKGVLVTCADG--TQYSADRILITV 111
+ L ++V + + D V G T SA+ I+I
Sbjct: 111 RVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIAT 155
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 29.5 bits (67), Expect = 0.72
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILIT 110
+L EVT + D + ++ DGT SAD I+I
Sbjct: 74 MLTGPEVTAL---DVQTRTISLDDGTTLSADAIVIA 106
Score = 27.5 bits (62), Expect = 3.3
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGV 115
+ L V + + V +DG + AD L + +G
Sbjct: 202 VELGTGVVGFS-GEGQLEQVMASDGRSFVADSAL--ICVGA 239
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 29.4 bits (67), Expect = 0.75
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 73 KKLLLKKEVTKIH----WEDPKGVLVTCADG--TQYSADRILITV 111
+K L K++V + + V V D YSA+ IL+
Sbjct: 112 QKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVAT 156
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 29.4 bits (67), Expect = 0.95
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGV 115
+ ++V ++ + V D AD L+ ++ GV
Sbjct: 218 VVHTGEKVVRLE-GENGKVARVITDKRTLDAD--LVILAAGV 256
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 29.0 bits (66), Expect = 1.1
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 73 KKLLLKKEVTKIH----WEDPKGVLVTCADGTQYSADRILITV 111
+ +L K V I + D K + V +G +AD ILI
Sbjct: 100 ENVLGKNNVDVIKGFARFVDAKTLEV---NGETITADHILIAT 139
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 29.1 bits (66), Expect = 1.1
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITV 111
+L + GVLVT DG L+T+
Sbjct: 239 RLFKNARAASVT-RTGAGVLVTMTDGRTVEGSHALMTI 275
>3gzu_A Inner capsid protein VP2; 7RP, DLP, metal- binding, virion, zinc,
core protein, RNA-binding, icosaderal virus; 3.80A
{Rotavirus A} PDB: 3kz4_A 3n09_A
Length = 800
Score = 29.3 bits (65), Expect = 1.1
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSYRER 51
++ L+ +++Q ++ + +G IP P + L + N +F +Y ER
Sbjct: 488 VQTLTTEKLQLTSVTSLCMLIGNATVIPSP-QTLFHYYNVNVNFHSNYNER 537
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 29.0 bits (66), Expect = 1.1
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 73 KKLLLKKEVTKIH----WEDPKGVLVTCADGTQYSADRILITV 111
+ + +T++ + D + V +G + SAD I+I
Sbjct: 99 DGYVERLGITRVDGHARFVDAHTIEV---EGQRLSADHIVIAT 138
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 28.6 bits (65), Expect = 1.3
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGV 115
L+L +V E ++ DG + +D + + +G
Sbjct: 207 NLVLGSKVAAFE-EVDDEIITKTLDGKEIKSD--IAILCIGF 245
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 28.7 bits (65), Expect = 1.4
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 73 KKLLLKKEVTKIH----WEDPKGVLVTCADG--TQYSADRILITV 111
+ L +K+V + + P + T G YSA+R LI
Sbjct: 137 RVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIAT 181
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 28.3 bits (64), Expect = 1.6
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITV 111
+ L + + + +G+ +DG D ++ V
Sbjct: 203 RFHLGPVLASLK-KAGEGLEAHLSDGEVIPCDLVVSAV 239
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 28.5 bits (64), Expect = 1.7
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 13/50 (26%)
Query: 70 DLSKKLL--LKKEVTKIHW--------EDPKGVLVTCADGTQYSADRILI 109
DL LL L+ + + W K +T + +AD ++I
Sbjct: 129 DLRAILLNSLENDT--VIWDRKLVMLEPGKKKWTLTFENKPSETAD-LVI 175
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.8 bits (61), Expect = 2.1
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 17/65 (26%)
Query: 121 ITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSIQGYNFLWTDEDQKN-----LF 175
I LPP ++ E + + + K W D K F
Sbjct: 174 IAIE--LPPNEILFSENNDMDNNNDGVDELNKKCT---------FW-DAISKLYYVQFFF 221
Query: 176 KEIGQ 180
K+ Q
Sbjct: 222 KQAEQ 226
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding,
tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate
aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB:
3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Length = 332
Score = 27.5 bits (60), Expect = 3.1
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 143 IDKLFLKFPSKW-WPDSIQGYNFLWTDEDQKNLFKEIGQVDGKPWVVGLTGFFASTEDPL 201
ID L ++ P + + +++ E+ F+E P++ G S E
Sbjct: 204 IDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAG--VSAELFQ 261
Query: 202 TLLEV 206
L
Sbjct: 262 ETLVF 266
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 27.6 bits (62), Expect = 3.2
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILI 109
+ + E DP G +T G AD +++
Sbjct: 123 DISVNSEAVAA---DPVGR-LTLQTGEVLEAD-LIV 153
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 27.7 bits (62), Expect = 3.4
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 73 KKLLLKKEVTKIH----WEDPKGVLVTCADG--TQYSADRILITV 111
K L +VT ++ P V +T + + + ++I++
Sbjct: 213 KVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILAT 257
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.90A {Escherichia coli}
SCOP: c.124.1.2
Length = 220
Score = 27.2 bits (61), Expect = 3.7
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 36 SSWGTNPHFRGSYREREREIEIFP 59
S GTNP E ++ + P
Sbjct: 76 SHIGTNPETGRRMISGEMDVVLVP 99
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase;
HET: B12 DCA; 2.00A {Propionibacterium freudenreichii
subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A*
3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Length = 727
Score = 27.0 bits (60), Expect = 6.1
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 182 DGKPWVVGLTGFFASTEDPLTLLEVD 207
G+ ++G+ + E PL +L+VD
Sbjct: 458 SGRQPLIGVNKYRLEHEPPLDVLKVD 483
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic
aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo
sapiens} PDB: 2xiq_A* 3bic_A
Length = 762
Score = 26.6 bits (59), Expect = 7.0
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 182 DGKPWVVGLTGFFASTEDPLTLLEVD 207
G +VG+ + ED + +L +D
Sbjct: 471 SGSEVIVGVNKYQLEKEDTVEVLAID 496
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 26.7 bits (59), Expect = 7.2
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 76 LLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGV 115
++ T I DP LV A G ++ DR + V+ G+
Sbjct: 72 VVHDSATGI---DPDKKLVKTAGGAEFGYDR-CV-VAPGI 106
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 26.5 bits (59), Expect = 8.5
Identities = 9/88 (10%), Positives = 22/88 (25%), Gaps = 24/88 (27%)
Query: 75 LLLKKEVTKIHW-------EDPKGVLVTCADGTQYSADRILI-TVS-------LGVLKSN 119
K+++ + D V G + A +++ + GV
Sbjct: 142 FQSKEQLNLEYILNCPAKVIDNHTVEAA---GKVFKAKNLILAVGAGPGTLDVPGVNAKG 198
Query: 120 LITF------VPPLPPKKLTAIEGLYIG 141
+ + P + + G
Sbjct: 199 VFDHATLVEELDYEPGSTVVVVGGSKTA 226
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU;
MCSG,PSI-biology, structural genomics, midwest center
for ST genomics; 2.29A {Helicobacter pylori}
Length = 235
Score = 26.1 bits (58), Expect = 8.7
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 36 SSWGTNPHFRGSYREREREIEIFP 59
S G N F E E+ + P
Sbjct: 79 SYVGENKIFESQMLNGEIEVVLTP 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.434
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,313,403
Number of extensions: 192124
Number of successful extensions: 621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 600
Number of HSP's successfully gapped: 87
Length of query: 208
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,216,824
Effective search space: 501802056
Effective search space used: 501802056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)