RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13537
(208 letters)
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 61.1 bits (146), Expect = 7e-12
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 83 KIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIEGLYIGT 142
+ P GV V D + YSAD ++++ SLGVL+S+LI F P LP K+ AI +
Sbjct: 234 REIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVG 293
Query: 143 IDKLFLKFPSKWWPD 157
+++ ++ P
Sbjct: 294 VNR--YEYDQLRAPV 306
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 55.9 bits (133), Expect = 5e-10
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 77 LKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 136
L++ V I + VLV + Y A ++ + + I F PPLP + I
Sbjct: 226 LERPVIYIDQTR-ENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMIT 282
Query: 137 GLYIGTIDKLFLKFPSKWW 155
++ I + + +
Sbjct: 283 RVFPPGILTQYGRVLRQPV 301
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 52.5 bits (124), Expect = 7e-09
Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 19/158 (12%)
Query: 12 DTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSYREREREIEIF---PSKQMPGQTP 68
DT + + P + + + S+ E + +IF
Sbjct: 178 DTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGM 237
Query: 69 IDLSKKLL--------LKKEVTKIHWEDPKGVLVT---CADGTQYSADRILITVSLGVLK 117
L + +V KI D K +V + +AD +++ + ++
Sbjct: 238 DKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVR 297
Query: 118 SNLITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWW 155
LI F PPL PKK A+ ++ F F
Sbjct: 298 --LIKFNPPLLPKKAHALRSVFTP---YQFQHFSDPLT 330
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 42.9 bits (100), Expect = 2e-06
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
+ L+ ++ +L +G EP +W + G Y
Sbjct: 63 LARLTKEERLKKLCELYAKVLGSLE-ALEPVHYEEKNWCEEQYSGGCY 109
Score = 32.5 bits (73), Expect = 0.010
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 140 IGTIDKLFLKFPSKWWPDSIQGYNFLWTDE 169
+G++ K + + +W + E
Sbjct: 2 LGSVIKCIVYYKEPFWRKKDYCGTMIIDGE 31
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays)
[TaxId: 4577]}
Length = 112
Score = 42.5 bits (99), Expect = 3e-06
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
+E S +Q +A+ M+++R K +P+ T L W ++ ++G++
Sbjct: 64 IEQQSDEQTKAEIMQVLRKMFPGK-DVPDATDILVPRWWSDRFYKGTF 110
Score = 39.4 bits (91), Expect = 4e-05
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 140 IGTIDKLFLKFPSKWWPDSIQGYNFLWTDEDQK--NLFKEIGQVDGKPWVVGLTGFFA 195
+ K+FLKFP K+WP+ FL+ + +++E + V L
Sbjct: 2 MAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANV--LLVTVT 57
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1,
LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 41.7 bits (97), Expect = 6e-06
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKVTIPEPTRCLHSSWGTNPHFRGSY 48
ME +S D I + +++ G +P+P + S W +P RGSY
Sbjct: 61 MENISDDVIVGRCLAILKGIFGSSA-VPQPKETVVSRWRADPWARGSY 107
Score = 37.5 bits (86), Expect = 2e-04
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 141 GTIDKLFLKFPSKWWPDSIQGYNFLWTDED 170
G ++K+ L F +W S+ + + +
Sbjct: 3 GNLNKVVLCFDRVFWDPSVNLFGHVGSTTA 32
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 35.5 bits (80), Expect = 0.003
Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 6/88 (6%)
Query: 70 DLSKKLLLKKEVTKIHWEDPKGVLVTCADGT--QYSADRILITVSLGVLKSNLITFVPPL 127
L + V + ED L+ G + S ++++ + PL
Sbjct: 231 SLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAK----LLRPL 286
Query: 128 PPKKLTAIEGLYIGTIDKLFLKFPSKWW 155
+ G+Y + +
Sbjct: 287 DDALAALVAGIYNLGHLERVAAIDAALQ 314
>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma
cruzi [TaxId: 5693]}
Length = 117
Score = 32.1 bits (72), Expect = 0.015
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITV 111
++L K+ K+ VT G + D +++ +
Sbjct: 80 QILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI 117
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper
(Calloselasma rhodostoma) [TaxId: 8717]}
Length = 113
Score = 31.7 bits (71), Expect = 0.020
Identities = 3/50 (6%), Positives = 8/50 (16%), Gaps = 2/50 (4%)
Query: 1 MEGLSLDQIQADTMKLIRHFVGPKV--TIPEPTRCLHSSWGTNPHFRGSY 48
+ L + + W + + G
Sbjct: 62 FQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGI 111
Score = 31.7 bits (71), Expect = 0.021
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 141 GTIDKLFLKFPSKWWPDSIQGYNFLWTDEDQKNLFKEIGQVDGKPWVVGLTGFFASTE 198
+ K+FL +K+W D TD + ++ V + + +
Sbjct: 3 RSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGV--IIAYGIGDD 58
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli
[TaxId: 562]}
Length = 116
Score = 30.9 bits (69), Expect = 0.036
Identities = 4/38 (10%), Positives = 12/38 (31%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITV 111
+L + + + DG + D ++ +
Sbjct: 78 QLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAI 115
>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia
fasciculata [TaxId: 5656]}
Length = 117
Score = 29.8 bits (66), Expect = 0.085
Identities = 4/37 (10%), Positives = 12/37 (32%)
Query: 75 LLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITV 111
+ + K+ V G + D +++ +
Sbjct: 79 VRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAI 115
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 137
Score = 30.1 bits (67), Expect = 0.085
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITVSLGV 115
K++ V + +L+ DG + D I+ V G+
Sbjct: 99 KVMPNAIVQSVG-VSSGKLLIKLKDGRKVETDHIVAAV--GL 137
>d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 273
Score = 27.7 bits (61), Expect = 0.85
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 31 TRCLHSSWGTNPHFRGSYREREREIEIFPSKQM 63
L WG +P + + +P +
Sbjct: 86 KWALCGHWGQSPRISDLAEQNKIIAYNYPQGVL 118
>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 242
Score = 27.6 bits (61), Expect = 1.1
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 32 RCLHSSWGTNPHFRGSYREREREIEIFP 59
R + S G N F Y E E+E+ P
Sbjct: 71 RMISSYVGENAEFERQYLAGELEVELTP 98
>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas
putida [TaxId: 303]}
Length = 133
Score = 25.6 bits (55), Expect = 2.7
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 74 KLLLKKEVTKIHW--EDPKGVLVTCADGTQYSADRILITV 111
+ +V + K V C DGT+ AD ++ +
Sbjct: 93 DIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGI 132
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein
kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 322
Score = 26.2 bits (57), Expect = 3.0
Identities = 9/75 (12%), Positives = 27/75 (36%)
Query: 112 SLGVLKSNLITFVPPLPPKKLTAIEGLYIGTIDKLFLKFPSKWWPDSIQGYNFLWTDEDQ 171
S+G+ + P+PP +E ++ ++ + P + ++
Sbjct: 188 SMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPP 247
Query: 172 KNLFKEIGQVDGKPW 186
+F+ + + +P
Sbjct: 248 MAIFELLDYIVNEPP 262
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis
[TaxId: 1351]}
Length = 123
Score = 25.2 bits (54), Expect = 3.7
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITV 111
+ + V + + V D Y AD +++ V
Sbjct: 88 TIATGETVERYEGDG--RVQKVVTDKNAYDADLVVVAV 123
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase,
BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 121
Score = 24.7 bits (53), Expect = 6.6
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 74 KLLLKKEVTKIHWEDPKGVLVTCADGTQYSADRILITV 111
L ++ VT +V DGT+ +AD +++ +
Sbjct: 88 DLRFERSVTGS-----VDGVVLLDDGTRIAADMVVVGI 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.139 0.434
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 838,484
Number of extensions: 40188
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 26
Length of query: 208
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,295,466
Effective search space: 164524182
Effective search space used: 164524182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)