BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1354
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 79.7 bits (195), Expect = 4e-15, Method: Composition-based stats.
Identities = 44/83 (53%), Positives = 60/83 (72%), Gaps = 5/83 (6%)
Query: 8 PTDHIGVIATYRNQVSLLKRLLDKDI---EINTVDQYQGRDKSIILYSSTCTSKSKE-SK 63
P+D IG+IA YR Q+ ++ LL + I E+NTVD+YQGRDKSI+L S ++K +
Sbjct: 934 PSD-IGIIAPYRQQLKIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGE 992
Query: 64 ILNDRKRLTVAISRAKHKLIILG 86
+L D +RL VAI+RAKHKLI+LG
Sbjct: 993 LLKDWRRLNVAITRAKHKLILLG 1015
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 61/86 (70%), Gaps = 6/86 (6%)
Query: 8 PTDHIGVIATYRNQVSLLKRLLDKD----IEINTVDQYQGRDKSIILYSSTCTSKSKE-S 62
P+D IGVIA YR Q+ ++ LL + +E+NTVD+YQGRDKS+IL S +++
Sbjct: 935 PSD-IGVIAPYRQQLRIISDLLARSSVGMVEVNTVDKYQGRDKSLILVSFVRSNEDGTLG 993
Query: 63 KILNDRKRLTVAISRAKHKLIILGDL 88
++L D +RL VA++RAKHKLI+LG +
Sbjct: 994 ELLKDWRRLNVALTRAKHKLILLGSV 1019
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 60/86 (69%), Gaps = 6/86 (6%)
Query: 8 PTDHIGVIATYRNQVSLLKRLLDKD----IEINTVDQYQGRDKSIILYSSTCTSKSKE-S 62
P+D IG+IA YR Q+ + LL + +E+NTVD+YQGRDKS+IL S +++
Sbjct: 932 PSD-IGIIAPYRQQLRTITDLLARSSVGMVEVNTVDKYQGRDKSLILVSFVRSNEDGTLG 990
Query: 63 KILNDRKRLTVAISRAKHKLIILGDL 88
++L D +RL VAI+RAKHKLI+LG +
Sbjct: 991 ELLKDWRRLNVAITRAKHKLILLGSV 1016
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 76.3 bits (186), Expect = 6e-14, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 6/84 (7%)
Query: 8 PTDHIGVIATYRNQVS----LLKRLLDKDIEINTVDQYQGRDKSIILYSSTCTSKSKE-S 62
P+D IG+I+ YR+Q+ L+ RL + +E+NT+D+YQGRDKSII+ S S +
Sbjct: 869 PSD-IGIISPYRHQLKVITDLMARLKENRVEVNTIDKYQGRDKSIIIVSFVRNSNDENLG 927
Query: 63 KILNDRKRLTVAISRAKHKLIILG 86
+L D +RL VAI+RAKHKLI++G
Sbjct: 928 ALLKDWRRLNVAITRAKHKLIMVG 951
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 75.9 bits (185), Expect = 8e-14, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 60/84 (71%), Gaps = 6/84 (7%)
Query: 8 PTDHIGVIATYRNQVSLLKRLLDKD----IEINTVDQYQGRDKSIILYSSTCTSKSKE-S 62
P+D IG+IA YR Q+ ++ LL + +E+NTVD+YQGRDKSI++ S +++
Sbjct: 934 PSD-IGIIAPYRQQLKVISDLLAQSSVGMVEVNTVDRYQGRDKSIVVVSFVRSNEDGTLG 992
Query: 63 KILNDRKRLTVAISRAKHKLIILG 86
++L D +RL VAI+RAKHKLI+LG
Sbjct: 993 ELLKDWRRLNVAITRAKHKLILLG 1016
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 8 PTDHIGVIATYRNQVSLLKRLLDK----DIEINTVDQYQGRDKSIILYSSTCTS-KSKES 62
P+D IG+IA YR Q+ ++ + +E+NTVD+YQGRDKS+I+ S ++ K
Sbjct: 934 PSD-IGIIAPYRQQLKMISNYFNSLSASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLG 992
Query: 63 KILNDRKRLTVAISRAKHKLIILG 86
+L D +RL VA++RAKHKLI+LG
Sbjct: 993 DLLKDWRRLNVALTRAKHKLIMLG 1016
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 6 GIPTDHIGVIATYRNQVSLLKRLLDK--DIEINTVDQYQGRDKSIILYSST-CTSKSKES 62
G+ IG+I+ Y++QV LL + L +IEINTVD+YQGRDK IIL S SK+
Sbjct: 1232 GVKQSSIGIISIYKSQVELLSKNLKSFTEIEINTVDRYQGRDKDIILISFVRSNSKNLVG 1291
Query: 63 KILNDRKRLTVAISRAKHKLIILGDLQVI 91
++L D RL VA+SRAK K I+ G L +
Sbjct: 1292 ELLRDWHRLNVALSRAKVKCIMFGSLSTL 1320
>sp|F6QXW0|DNA2_XENTR DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
tropicalis GN=dna2 PE=3 SV=1
Length = 1048
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 8 PTDHIGVIATYRNQVSLLKRLLDK----DIEINTVDQYQGRDKSIILYSSTCTS-KSKES 62
P+D IG+IA YR Q+ ++ + +E+NTVD+YQGRDKS+I+ S ++ K
Sbjct: 929 PSD-IGIIAPYRQQLKVISNYFNSLSASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLG 987
Query: 63 KILNDRKRLTVAISRAKHKLIILG 86
+L D +RL VA++RAKHKLI+LG
Sbjct: 988 DLLKDWRRLNVALTRAKHKLIMLG 1011
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 61/91 (67%), Gaps = 5/91 (5%)
Query: 6 GIPTDHIGVIATYRNQVSLLKRLLDK-----DIEINTVDQYQGRDKSIILYSSTCTSKSK 60
+P + IGVI+ Y QVS LK+L+ DIEI+TVD +QGR+K +I+ S +++
Sbjct: 563 NVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREKDVIILSLVRSNEKF 622
Query: 61 ESKILNDRKRLTVAISRAKHKLIILGDLQVI 91
E L + +RL VA++R + +L+++G+++V+
Sbjct: 623 EVGFLKEERRLNVAMTRPRRQLVVVGNIEVL 653
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 8/109 (7%)
Query: 3 LISGIPTDHIGVIATYRNQVSLLKRLLDKDI----EINTVDQYQGRDKSIILYSST-CTS 57
L+SG+P + IGV+ YR Q+ LLK++ +K++ EI T DQ+QGRDK I+ S S
Sbjct: 1352 LLSGVPCEDIGVMTLYRAQLRLLKKIFNKNVYDGLEILTADQFQGRDKKCIIISMVRRNS 1411
Query: 58 KSKESKILNDRKRLTVAISRAKHKLIILGDLQVIIAIVNCPNTGRYGNL 106
+ +L + +R+ VA++RAK KLII+G I ++ P + NL
Sbjct: 1412 QLNGGALLKELRRVNVAMTRAKSKLIIIGSKSTIGSV---PEIKSFVNL 1457
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 10/99 (10%)
Query: 3 LISGIPTDHIGVIATYRNQVSL----------LKRLLDKDIEINTVDQYQGRDKSIILYS 52
L SG+ IGVI Y Q + L++ L K+IE+ +VD +QGR+K I+ S
Sbjct: 801 LKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILS 860
Query: 53 STCTSKSKESKILNDRKRLTVAISRAKHKLIILGDLQVI 91
+++ + LND +RL VA++RA++ ++ILG+ +V+
Sbjct: 861 CVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVL 899
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 10/99 (10%)
Query: 3 LISGIPTDHIGVIATYRNQVSLLKRLLD----------KDIEINTVDQYQGRDKSIILYS 52
L +GI + IG+I Y Q + L + + ++IEI +VD +QGR+K II+ S
Sbjct: 761 LKAGIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMS 820
Query: 53 STCTSKSKESKILNDRKRLTVAISRAKHKLIILGDLQVI 91
+++ + LND +RL VA++RAK +II+G+ +V+
Sbjct: 821 CVRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGNPKVL 859
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 9/84 (10%)
Query: 7 IPTDHIGVIATYRNQVSLLKRLLDK---DIEINTVDQYQGRDKSIILYSSTCTSKSKESK 63
IPT+ VI Y QV L+RL ++ DIE+NTVD +QGR+ I+ S ++K
Sbjct: 555 IPTN---VITPYDAQVRYLRRLFEEHNIDIEVNTVDGFQGRENEAIVISFV---RTKNFG 608
Query: 64 ILNDRKRLTVAISRAKHKLIILGD 87
L D +RL VAI+RAK KLI++G+
Sbjct: 609 FLKDLRRLNVAITRAKRKLILIGN 632
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 3 LISGIPTDHIGVIATYRNQVSLLKRLLDK---DIEINTVDQYQGRDKSIILYSSTCTSKS 59
L +G+ I V+ Y QV+L+++LL + ++E+ +VD+ QGR+K I++S ++
Sbjct: 540 LEAGLEAKDIAVVTPYNAQVALIRQLLKEKGIEVEMGSVDKVQGREKEAIIFSLVRSNDV 599
Query: 60 KESKILNDRKRLTVAISRAKHKLIILGDLQVI 91
+E L +++RL VAI+R K L ++GD +
Sbjct: 600 REVGFLAEKRRLNVAITRPKRHLCVIGDSNTV 631
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 9 TDHIGVIATYRNQVSLLKRLLD--------KDIEINTVDQYQGRDKSIILYSSTCTSKSK 60
T IGVI YR+Q+ L+R I+I TVD +QG++K II +S +
Sbjct: 1530 TGRIGVITPYRSQLHELRRAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKH 1589
Query: 61 ESKILNDRKRLTVAISRAKHKLIILGDLQVI 91
L D +RL VA++RA+ L+I+G+++ +
Sbjct: 1590 GIGFLRDFRRLNVALTRARSSLLIIGNMETL 1620
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 10/95 (10%)
Query: 3 LISGIPTDHIGVIATYRNQVSLLKRLLD----------KDIEINTVDQYQGRDKSIILYS 52
L +G D IG+I Y Q S L + + +++EI +VD +QGR+K I+ S
Sbjct: 787 LKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILS 846
Query: 53 STCTSKSKESKILNDRKRLTVAISRAKHKLIILGD 87
++ + LND +RL VA++RA++ +II+G+
Sbjct: 847 CVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGN 881
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 10/95 (10%)
Query: 3 LISGIPTDHIGVIATYRNQVSLLKRLLD----------KDIEINTVDQYQGRDKSIILYS 52
L +G D IG+I Y Q S L + + +++EI +VD +QGR+K I+ S
Sbjct: 792 LKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILS 851
Query: 53 STCTSKSKESKILNDRKRLTVAISRAKHKLIILGD 87
++ + LND +RL VA++RA++ +II+G+
Sbjct: 852 CVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGN 886
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 8/84 (9%)
Query: 12 IGVIATYRNQVSLLKR--------LLDKDIEINTVDQYQGRDKSIILYSSTCTSKSKESK 63
IGV+ YR+QV L+ ++ K ++I+TVD +QG++K II++S +S S
Sbjct: 1671 IGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIG 1730
Query: 64 ILNDRKRLTVAISRAKHKLIILGD 87
L D +RL VA++RAK L I+G+
Sbjct: 1731 FLQDLRRLNVALTRAKSSLYIVGN 1754
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 9/94 (9%)
Query: 3 LISGIPTDHIGVIATYRNQVSLLKRLLD---------KDIEINTVDQYQGRDKSIILYSS 53
L +G D IG+I Y Q S L + + +EI +VD +QGR+K I+ S
Sbjct: 762 LKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQVEIASVDAFQGREKDFIILSC 821
Query: 54 TCTSKSKESKILNDRKRLTVAISRAKHKLIILGD 87
++ + LND +RL VA++RAK+ +II+G+
Sbjct: 822 VRANEHQGIGFLNDPRRLNVALTRAKYGVIIVGN 855
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 10/99 (10%)
Query: 3 LISGIPTDHIGVIATYRNQVSL----------LKRLLDKDIEINTVDQYQGRDKSIILYS 52
L S + + IG++ Y Q S +++ L K +E+ +VD +QGR+K I+ S
Sbjct: 709 LRSNVLPEQIGIVTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILS 768
Query: 53 STCTSKSKESKILNDRKRLTVAISRAKHKLIILGDLQVI 91
+S+ + +ND +RL VA++RAK+ +I+LG+ +V+
Sbjct: 769 CVRSSEHQGIGFVNDPRRLNVALTRAKYGVIVLGNPKVL 807
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 58/97 (59%), Gaps = 10/97 (10%)
Query: 5 SGIPTDHIGVIATYRNQVSLL----------KRLLDKDIEINTVDQYQGRDKSIILYSST 54
+G+ IGVI Y Q S + K+ +++E+ +VD +QGR+K I+ S
Sbjct: 768 AGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCV 827
Query: 55 CTSKSKESKILNDRKRLTVAISRAKHKLIILGDLQVI 91
+++++ L+D +RL VA++RAK+ L+I+G+ +V+
Sbjct: 828 RSNENQGIGFLSDPRRLNVALTRAKYGLVIIGNPKVL 864
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 9/87 (10%)
Query: 9 TDHIGVIATYRNQVSLLKR--------LLDKDIEINTVDQYQGRDKSIILYSSTCTSKSK 60
T IG+I+ YR Q+ +++ +++K I+ NT+D +QG++K IIL S +K
Sbjct: 1743 TGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTK 1802
Query: 61 ES-KILNDRKRLTVAISRAKHKLIILG 86
S L D +R+ VA++RAK + +LG
Sbjct: 1803 SSVGFLKDFRRMNVALTRAKTSIWVLG 1829
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 13/97 (13%)
Query: 2 SLI-SGIPTDHIGVIATYRNQVSLLKRLLD---------KDIEINTVDQYQGRDKSIILY 51
SLI SGI IGVI Y++Q+ L LL K ++++TVD +QG +K II+
Sbjct: 769 SLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIIL 828
Query: 52 SSTCTSKSKESKILNDRKRLTVAISRAKHKLIILGDL 88
S ++++ ++ KR+ VA++R K L+I+G+L
Sbjct: 829 SCV---RTRQVGFIDSEKRMNVALTRGKRHLLIVGNL 862
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 16/104 (15%)
Query: 2 SLISGIPTDHIGVIATYRNQVSLLKRLLDK----DIEINTVDQYQGRDKSIILYSSTCTS 57
S+ S + + IGVI YR QV +K LL DI++ +V+++QG++ +I+ S T
Sbjct: 1055 SVSSQVSSKDIGVITPYRKQVEKIKILLRNVDLTDIKVGSVEEFQGQEYLVIVIS---TV 1111
Query: 58 KSKESKILNDR---------KRLTVAISRAKHKLIILGDLQVII 92
+S E + +DR KR VAI+R K LIILG+ V++
Sbjct: 1112 RSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIILGNPHVLV 1155
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 16/104 (15%)
Query: 2 SLISGIPTDHIGVIATYRNQVSLLKRLLDK----DIEINTVDQYQGRDKSIILYSSTCTS 57
S+ S + IGVI YR QV ++ LL DI++ +V+++QG++ +I+ S T
Sbjct: 1053 SISSQVSASDIGVITPYRKQVEKIRILLRNVDLMDIKVGSVEEFQGQEYLVIIIS---TV 1109
Query: 58 KSKESKILNDR---------KRLTVAISRAKHKLIILGDLQVII 92
+S E + +DR KR VAI+R K LI+LG+ V++
Sbjct: 1110 RSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLGNPHVLV 1153
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 10/92 (10%)
Query: 6 GIPTDHIGVIATYRNQVSLLKRL------LDKD----IEINTVDQYQGRDKSIILYSSTC 55
G+ + IGVI Y Q + + + LDKD +E+ +VD +QGR+K I+ S
Sbjct: 720 GVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVR 779
Query: 56 TSKSKESKILNDRKRLTVAISRAKHKLIILGD 87
++ + L D +RL V ++RAK+ L+ILG+
Sbjct: 780 ANEQQAIGFLRDPRRLNVGLTRAKYGLVILGN 811
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 46/129 (35%)
Query: 7 IPTDHIGVIATYRNQVSLLKRLLDKDIEIN------------------------------ 36
+P + IGVI Y Q LL +L K++ IN
Sbjct: 968 VPLEEIGVITPYSAQRDLLSDILTKNVVINPKQISMQQEYDEIELFNAAGSQGTAGSLQN 1027
Query: 37 ------------TVDQYQGRDKSIILYSSTCTSKSKESKI--LNDRKRLTVAISRAKHKL 82
TVD +QG +KS I++S C + E+KI L D++RL VA++RAKH L
Sbjct: 1028 NVINIINGLHVATVDSFQGHEKSFIIFS--CVRNNTENKIGFLRDKRRLNVALTRAKHGL 1085
Query: 83 IILGDLQVI 91
I++G+ V+
Sbjct: 1086 IVVGNKNVL 1094
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 5 SGIPTDHIGVIATYRNQVSL----------LKRLLDKDIEINTVDQYQGRDKSIILYSST 54
+G+ IGVI +Y Q S L L +++EI +VD +QGR+K I+ +
Sbjct: 757 AGVQPHQIGVITSYEGQRSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCV 816
Query: 55 CTSKSKESKILNDRKRLTVAISRAKHKLIILGDLQVI 91
++ L+D +RL VAI+RAK+ L+++G+ +V+
Sbjct: 817 RSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVL 853
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 11/101 (10%)
Query: 7 IPTDHIGVIATYRNQVSLLKRLLDK----DIEINTVDQYQGRDKSIILYSST-CTSKSKE 61
+ + IGVI YR QV +K +LD+ ++++ +V+Q+QG++K +I+ S+ T K E
Sbjct: 704 VQEEDIGVITPYRQQVMKIKEVLDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNE 763
Query: 62 SK------ILNDRKRLTVAISRAKHKLIILGDLQVIIAIVN 96
L++ +R VAI+RA L+I+G+ +I +N
Sbjct: 764 FDRAYCLGFLSNPRRFNVAITRAISLLVIIGNPHIICKDMN 804
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 5 SGIPTDHIGVIATYRNQVSLLKRLL---DKDIEINTVDQYQGRDKSIILYSSTCTSKSKE 61
+G+P I V++ Y QV LL++ L ++EI +VD +QGR+K ++ S +++ E
Sbjct: 528 AGVPARDIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGE 587
Query: 62 SKILNDRKRLTVAISRAKHKLIILGDLQVI 91
L + +R+ VA++RA+ + ++ D + +
Sbjct: 588 VGFLAEDRRINVAVTRARRHVAVICDSRTV 617
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 12 IGVIATYRNQVSLLKRLLD--KDIEINTVDQYQGRDKSIILYSSTCTSKSKES----KIL 65
IG+I+ YR QV L+ + I I+TVD +QGR++ II++S C E L
Sbjct: 744 IGIISPYRQQVLALREIFKNYPGISIDTVDGFQGREREIIIFS--CVRAPVEEGAGIGFL 801
Query: 66 NDRKRLTVAISRAKHKLIILGDLQVI 91
+D +R+ VA++R + L+ILG+ + +
Sbjct: 802 SDVRRMNVALTRPRSSLLILGNTKAL 827
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 5 SGIPTDHIGVIATYRNQVSLLKRLLDK---DIEINTVDQYQGRDKSIILYSSTCTSKSKE 61
+G+ I VIA Y QV LL++ L ++EI +VD +QGR+K +L + +++ E
Sbjct: 527 AGVQAGDIAVIAPYNLQVDLLRQSLSNKHPELEIKSVDGFQGREKEAVLLTFVRSNRKGE 586
Query: 62 SKILNDRKRLTVAISRAKHKLIILGDLQVI 91
L + +R+ VA++RA+ + ++ D +
Sbjct: 587 VGFLAEDRRINVAVTRARRHVAVICDSHTV 616
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Query: 11 HIGVIATYRNQVSLLKRLLDKDI------EINTVDQYQGRDKSIILYSSTCTSKSKES-K 63
+IG+I Y+ Q +++++ L+K+ E++TVD +QGR K I+ + S + S
Sbjct: 2317 NIGIITHYKAQKTMIQKDLEKEFDKKGPAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIG 2376
Query: 64 ILNDRKRLTVAISRAKHKLIILGDLQVII 92
L +RL V I+RAK+ L ILG L+ ++
Sbjct: 2377 FLASLQRLNVTITRAKYSLFILGHLRTLM 2405
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 59/106 (55%), Gaps = 18/106 (16%)
Query: 4 ISGIPTDHIGVIATYRNQVSLLKRLLDKD-----------IEINTVDQYQGRDKSIILYS 52
IS I IG+IA YR QV +KR +D D +++ +V+++QG+++ +I+ S
Sbjct: 846 ISRIFPKDIGIIAPYRKQVEKIKRAIDADKDFQDYMGIDNLKVGSVEEFQGQERKVIMVS 905
Query: 53 STCTS-------KSKESKILNDRKRLTVAISRAKHKLIILGDLQVI 91
+ +S ++ L + KR VA++RAK LI++G+ ++
Sbjct: 906 TVRSSVKYISLDETFNIGFLKNEKRFNVAVTRAKSLLIMVGNPMIL 951
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 5 SGIPTDHIGVIATYRNQVSLLKRLLDK---DIEINTVDQYQGRDKSIILYSSTCTSKSKE 61
+G+ I VIA Y QV LL++ L ++EI +VD +QGR+K ++ + +++ E
Sbjct: 527 AGVHAGDIAVIAPYNLQVDLLRQSLSNKHPELEIKSVDGFQGREKEAVILTFVRSNRKGE 586
Query: 62 SKILNDRKRLTVAISRAKHKLIILGDLQVI 91
L + +R+ VA++RA+ + ++ D + +
Sbjct: 587 VGFLAEDRRINVAVTRARRHVAVICDSRTV 616
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 5 SGIPTDHIGVIATYRNQVSLLKRLLDK---DIEINTVDQYQGRDKSIILYSSTCTSKSKE 61
+G+ I VIA Y QV LL++ L ++EI +VD +QGR+K ++ + +++ E
Sbjct: 527 AGVQAGDIAVIAPYNLQVDLLRQSLSNKHPELEIKSVDGFQGREKEAVILTFVRSNRKGE 586
Query: 62 SKILNDRKRLTVAISRAKHKLIILGDLQVI 91
L + +R+ VA++RA+ + ++ D +
Sbjct: 587 VGFLAEDRRINVAVTRARRHVAVICDSHTV 616
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Query: 11 HIGVIATYRNQVSLLKRLLDKDI------EINTVDQYQGRDKSIILYSSTCTSKSKES-K 63
+IG+I Y+ Q +++++ LDK+ E++TVD +QGR K ++ + + + S
Sbjct: 2341 NIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTVDAFQGRQKDCVIVTCVRANSIQGSIG 2400
Query: 64 ILNDRKRLTVAISRAKHKLIILGDLQVII 92
L +RL V I+RAK+ L ILG L+ ++
Sbjct: 2401 FLASLQRLNVTITRAKYSLFILGHLRTLM 2429
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 19/95 (20%)
Query: 12 IGVIATYRNQVSLLK----------RLLD--KDIEINTVDQYQGRDKSIILYSSTCTSKS 59
+GVI+ YR QV ++ R LD KD+++ +V+++QG+++S+IL S+ +S+S
Sbjct: 827 VGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQS 886
Query: 60 KES-------KILNDRKRLTVAISRAKHKLIILGD 87
L + KR VA++RAK LII+G+
Sbjct: 887 FVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGN 921
>sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C10.2 OS=Caenorhabditis
elegans GN=C05C10.2 PE=2 SV=1
Length = 1551
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 8 PTDHIGVIATYRNQVSLL-KRLLDKDIEINTVDQYQGRDKSIILYSSTCTSKSKESKILN 66
P+D IGVI+ Y Q S+L + L ++ TVD +QG +K II+ C++ + S +
Sbjct: 1367 PSD-IGVISFYSAQTSILTEHLRGSGVKCGTVDAFQGSEKEIII---MCSTNERISDFMQ 1422
Query: 67 DRKRLTVAISRAKHKLIILGDL 88
RL VA+SRAK II+G L
Sbjct: 1423 LSNRLNVAMSRAKQVTIIIGHL 1444
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 11 HIGVIATYRNQVSL----------LKRLLDKDIEINTVDQYQGRDKSIILYSSTCTSKSK 60
IG+I Y Q + L L K IE+ +VD +QGR+K I+ S ++ +
Sbjct: 858 QIGIITPYEGQRAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQ 917
Query: 61 ESKILNDRKRLTVAISRAKHKLIILGDLQVI 91
L D +RL VA++RA+ LIILG+ +V+
Sbjct: 918 GIGFLQDPRRLNVALTRARFGLIILGNAKVL 948
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 19/96 (19%)
Query: 11 HIGVIATYRNQVSLLK----------RLLD--KDIEINTVDQYQGRDKSIILYSSTCTSK 58
++GVI+ YR QV ++ R LD KD+++ +V+++QG+++S+IL S+ +S+
Sbjct: 827 NVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQ 886
Query: 59 SKES-------KILNDRKRLTVAISRAKHKLIILGD 87
S L + KR VA++RAK LI++G+
Sbjct: 887 SFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGN 922
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 19/95 (20%)
Query: 12 IGVIATYRNQVSLLK----------RLLD--KDIEINTVDQYQGRDKSIILYSSTCTSKS 59
+GVI+ YR QV ++ R LD KD+++ +V+++QG+++S+IL S+ +S+S
Sbjct: 827 VGVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQS 886
Query: 60 KES-------KILNDRKRLTVAISRAKHKLIILGD 87
L + KR VA++RAK LI++G+
Sbjct: 887 FVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGN 921
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 22/104 (21%)
Query: 4 ISGIPTDHIGVIATYRNQVSLLKRLLD-----------KDIEINTVDQYQGRDKSIILYS 52
I+ I IG+IA YR QV +++ + +++++ +V+++QG+++ +I+ S
Sbjct: 841 IAKISPKDIGIIAPYRKQVEKIRQAIKIHRELKSLSGIEELKVGSVEEFQGQERKVIIVS 900
Query: 53 STCTSKSKESKILNDR---------KRLTVAISRAKHKLIILGD 87
+ SKE IL+D+ KR VA++RAK LI++G+
Sbjct: 901 TV--RSSKEHIILDDKFNIGFLKNEKRFNVAVTRAKALLIMVGN 942
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 18/107 (16%)
Query: 5 SGIPTDHIGVIATYRNQVSLLKRL-LDKDI---EINTVDQYQGRDKSIILYSSTCTSKSK 60
+ + D IG+I Y+ QV +L+ + + D+ +I +V+++QG+++ IIL S T +S
Sbjct: 1124 ANVTADQIGIITPYQKQVKMLRSMFIGTDVVMPKIGSVEEFQGQERDIILIS---TVRSS 1180
Query: 61 ESKILND----------RKRLTVAISRAKHKLIILGDLQVIIAIVNC 97
E + D KRL VA+SRA+ +II G+ ++A+ C
Sbjct: 1181 EEILRMDARFSLGFVRCSKRLNVAVSRARAMMIIFGNPH-LLAVDEC 1226
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 9 TDHIGVIATYRNQVSLLKRLL--------DKDIEINTVDQYQGRDKSIILYSSTCTSKSK 60
+ + +I+ Y QV K +K ++INTVD +QGR+K + ++S +++
Sbjct: 644 SSQLAIISPYNYQVKTFKDRFKEMFGTEAEKVVDINTVDGFQGREKDVAIFSCVRANENG 703
Query: 61 ESKILNDRKRLTVAISRAKHKLIILG 86
+ L++ +R+ V I+RAK ++++G
Sbjct: 704 QIGFLSNSRRMNVGITRAKSSVLVVG 729
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 11 HIGVIATYRNQVSLLKRLLD----KDIEINTVDQYQGRDKSIILYSSTCTSKSKESKILN 66
I ++ TY Q+ L++L+ I+++ VD+YQG + IIL S +++ + L
Sbjct: 1146 QITILTTYTGQLFCLRKLMPVKTFAGIKVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQ 1205
Query: 67 DRKRLTVAISRAKHKLIILGDLQVIIAI 94
R+ VA+SRAK + +G++Q++ +
Sbjct: 1206 IPNRICVALSRAKKGMYCIGNMQMLAKV 1233
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 11 HIGVIATYRNQVSLLKRLLDKD----IEINTVDQYQGRDKSIILYSSTCTSKSKESKILN 66
I ++ TY Q+ L++L+ + ++ VD+YQG + IIL S +++ + L
Sbjct: 1153 QITILTTYTGQLFCLRKLMPAKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQ 1212
Query: 67 DRKRLTVAISRAKHKLIILGDLQVIIAI 94
R+ VA+SRAK + +G++Q++ +
Sbjct: 1213 ISNRICVALSRAKKGMYCIGNMQMLAKV 1240
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 5 SGIPTDHIGVIATYRNQVSLLKRLLDKD-------IEINTVDQYQGRDKSIILYSSTCTS 57
+G+ I + Y Q L++RLL + I++ TVD YQG + ++L S +
Sbjct: 852 NGVEPQKITCLTFYAAQKDLIERLLSESLNREKHFIKVATVDGYQGEENDVVLLSLVRNN 911
Query: 58 KSKESKILNDRKRLTVAISRAKHKLIILGDLQVI 91
E L+ R+ V++SRA+ L I G+ Q++
Sbjct: 912 DRTEVGFLSSPHRVCVSLSRARRGLFIFGNAQLV 945
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 22/108 (20%)
Query: 6 GIPT---DHIGVIATYRNQVS-----------LLKRLLD-KDIEINTVDQYQGRDKSIIL 50
G PT IG+I+ YR QV +L+ L D +++ +V+++QG+++ +IL
Sbjct: 815 GCPTISPKEIGIISPYRKQVEKIRLAITSKDPVLRALPDIGQLKVGSVEEFQGQERRVIL 874
Query: 51 YSS--TCTS-----KSKESKILNDRKRLTVAISRAKHKLIILGDLQVI 91
S+ +C+ ++ L + KRL VA++RAK LI++G+ V+
Sbjct: 875 ISTVRSCSEYLQLDQTFRLGFLKNPKRLNVALTRAKALLIVVGNAAVL 922
>sp|Q8CFQ3|AQR_MOUSE Intron-binding protein aquarius OS=Mus musculus GN=Aqr PE=2 SV=2
Length = 1481
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 6 GIPTDHIGVIATYRNQVSLLKRLLDKDI----------EINTVDQYQGRDKSIILYSSTC 55
G P D I ++ TY Q L++ ++++ ++ TVD++QG+ IL S
Sbjct: 1222 GYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLV- 1280
Query: 56 TSKSKESKILNDRKRLTVAISRAKHKLIILG 86
+++ L D +RL VA+SRA+ L I
Sbjct: 1281 --RTRAVGHLRDVRRLVVAMSRARLGLYIFA 1309
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,006,746
Number of Sequences: 539616
Number of extensions: 1414302
Number of successful extensions: 3782
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 3683
Number of HSP's gapped (non-prelim): 105
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)