Query psy1354
Match_columns 118
No_of_seqs 112 out of 1025
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 21:53:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 5.6E-30 1.9E-34 208.2 6.4 90 2-91 523-615 (646)
2 2gk6_A Regulator of nonsense t 99.9 2.9E-25 9.9E-30 180.2 3.9 90 2-91 490-589 (624)
3 2wjy_A Regulator of nonsense t 99.9 1E-24 3.5E-29 181.4 6.5 101 2-111 666-776 (800)
4 2xzl_A ATP-dependent helicase 99.9 7.3E-25 2.5E-29 182.4 4.6 101 2-111 668-778 (802)
5 3dmn_A Putative DNA helicase; 99.3 1.3E-12 4.5E-17 90.7 5.9 77 9-88 61-154 (174)
6 3e1s_A Exodeoxyribonuclease V, 99.0 9E-11 3.1E-15 94.7 2.3 73 35-112 493-565 (574)
7 1w36_D RECD, exodeoxyribonucle 98.6 5.3E-08 1.8E-12 78.9 5.7 101 5-111 491-605 (608)
8 3vkw_A Replicase large subunit 98.1 1.7E-06 5.7E-11 68.1 4.2 70 13-87 351-421 (446)
9 3upu_A ATP-dependent DNA helic 97.9 1.1E-06 3.8E-11 68.6 -0.1 50 33-85 410-459 (459)
10 1uaa_A REP helicase, protein ( 97.7 8.7E-06 3E-10 66.1 1.7 57 32-88 551-613 (673)
11 1w36_B RECB, exodeoxyribonucle 97.6 2E-05 7E-10 68.0 2.8 55 32-86 735-817 (1180)
12 1pjr_A PCRA; DNA repair, DNA r 97.6 1.4E-05 4.9E-10 65.7 0.8 56 32-87 558-620 (724)
13 3lfu_A DNA helicase II; SF1 he 97.5 3E-05 1E-09 62.2 2.4 57 32-88 553-616 (647)
14 3u4q_A ATP-dependent helicase/ 97.4 7.8E-05 2.7E-09 64.7 3.2 59 32-90 787-886 (1232)
15 1w36_C RECC, exodeoxyribonucle 95.0 0.025 8.6E-07 48.8 4.7 57 32-88 658-733 (1122)
16 3u4q_B ATP-dependent helicase/ 93.8 0.04 1.4E-06 47.5 3.5 56 32-87 587-670 (1166)
17 3lw6_A FI08434P, beta-4-galact 75.2 0.59 2E-05 34.6 0.0 77 6-91 47-125 (287)
18 3lfu_A DNA helicase II; SF1 he 73.4 1.5 5E-05 34.8 1.9 29 3-31 341-369 (647)
19 3vkw_A Replicase large subunit 71.0 3.6 0.00012 32.2 3.6 75 10-94 185-275 (446)
20 1uaa_A REP helicase, protein ( 46.6 5.5 0.00019 32.0 0.7 37 5-41 43-87 (673)
21 2xed_A Putative maleate isomer 43.8 10 0.00035 27.3 1.7 23 9-31 146-169 (273)
22 1pjr_A PCRA; DNA repair, DNA r 40.0 13 0.00045 30.3 2.0 27 5-31 347-373 (724)
23 2nxv_A ATP synthase subunits r 35.9 46 0.0016 22.9 4.1 70 11-91 17-86 (249)
24 2fy7_A Beta-1,4-galactosyltran 32.6 12 0.00041 27.1 0.6 72 8-91 63-141 (287)
25 2ayx_A Sensor kinase protein R 31.1 1.3E+02 0.0043 20.5 6.4 51 7-57 9-60 (254)
26 3u4q_A ATP-dependent helicase/ 25.5 27 0.00092 30.4 1.6 36 6-41 54-112 (1232)
27 2dgd_A 223AA long hypothetical 24.3 49 0.0017 22.4 2.6 23 9-31 108-131 (223)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=99.96 E-value=5.6e-30 Score=208.23 Aligned_cols=90 Identities=30% Similarity=0.584 Sum_probs=86.0
Q ss_pred cccCCCCCCcEEEEcCcHHHHHHHHHHhcc---CceecccCCCCCccccEEEEEcccCCCCccccccCCcCchhhhhhhh
Q psy1354 2 SLISGIPTDHIGVIATYRNQVSLLKRLLDK---DIEINTVDQYQGRDKSIILYSSTCTSKSKESKILNDRKRLTVAISRA 78 (118)
Q Consensus 2 l~~~g~~~~~I~Iitpy~~Q~~~i~~~l~~---~~~v~Tv~~~qG~E~d~vi~s~~~~~~~~~~g~~~~~~~lnvaltRA 78 (118)
|++.|+++++|||||||++|+.+|++.|.. .+.|+|||+|||+|+|+||+|+|+++..+..||+.|++|+|||+|||
T Consensus 523 L~~~gv~~~dIgVItpYraQ~~~l~~~l~~~~~~i~v~TVd~fQG~E~dvII~S~vrsn~~~~iGFl~~~rRlNVAlTRA 602 (646)
T 4b3f_X 523 LVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRA 602 (646)
T ss_dssp HHHHTCCGGGEEEEESCHHHHHHHHHHHTTTCTTCEEEEGGGGTTCCEEEEEEECCCCCTTCCCCSTTCHHHHHHHHHTE
T ss_pred HHhcCCCcCcEEEECCCHHHHHHHHHHHHHhCCCCEECChhhcccccCCEEEEEeccCCCCCCccccCCcCcEEeEhhhh
Confidence 456799999999999999999999999977 79999999999999999999999999888899999999999999999
Q ss_pred hcceEEEechhHH
Q psy1354 79 KHKLIILGDLQVI 91 (118)
Q Consensus 79 k~~livvg~~~~l 91 (118)
|++||||||+.+|
T Consensus 603 k~~liivGn~~~l 615 (646)
T 4b3f_X 603 RRHVAVICDSRTV 615 (646)
T ss_dssp EEEEEEEECHHHH
T ss_pred hCeEEEEEchHHh
Confidence 9999999999999
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=99.90 E-value=2.9e-25 Score=180.21 Aligned_cols=90 Identities=36% Similarity=0.615 Sum_probs=78.9
Q ss_pred cccCCCCCCcEEEEcCcHHHHHHHHHHhcc----------CceecccCCCCCccccEEEEEcccCCCCccccccCCcCch
Q psy1354 2 SLISGIPTDHIGVIATYRNQVSLLKRLLDK----------DIEINTVDQYQGRDKSIILYSSTCTSKSKESKILNDRKRL 71 (118)
Q Consensus 2 l~~~g~~~~~I~Iitpy~~Q~~~i~~~l~~----------~~~v~Tv~~~qG~E~d~vi~s~~~~~~~~~~g~~~~~~~l 71 (118)
|++.|+++++|||||||++|+..|++.+.. .+.|+|||+|||+|+|+||+++++++.....||+.|++++
T Consensus 490 l~~~g~~~~dIgVItpy~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~~~~~gfl~~~~rl 569 (624)
T 2gk6_A 490 LLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL 569 (624)
T ss_dssp HHTTTCCGGGEEEECSCHHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC------CCTTTCHHHH
T ss_pred HHHcCCCCCeEEEEcCCHHHHHHHHHHHHhhccccccccCceEEechhhcCCcccCEEEEEeecCCCCCCccccCCccee
Confidence 356789999999999999999999988853 5899999999999999999999999877778999999999
Q ss_pred hhhhhhhhcceEEEechhHH
Q psy1354 72 TVAISRAKHKLIILGDLQVI 91 (118)
Q Consensus 72 nvaltRAk~~livvg~~~~l 91 (118)
|||+||||++|+|||++..|
T Consensus 570 nVAlTRAk~~L~ivg~~~~l 589 (624)
T 2gk6_A 570 NVALTRARYGVIIVGNPKAL 589 (624)
T ss_dssp HHHTTSEEEEEEEEECHHHH
T ss_pred eeehhhhhCcEEEEECHHHH
Confidence 99999999999999999999
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=99.90 E-value=1e-24 Score=181.45 Aligned_cols=101 Identities=32% Similarity=0.544 Sum_probs=89.7
Q ss_pred cccCCCCCCcEEEEcCcHHHHHHHHHHhcc----------CceecccCCCCCccccEEEEEcccCCCCccccccCCcCch
Q psy1354 2 SLISGIPTDHIGVIATYRNQVSLLKRLLDK----------DIEINTVDQYQGRDKSIILYSSTCTSKSKESKILNDRKRL 71 (118)
Q Consensus 2 l~~~g~~~~~I~Iitpy~~Q~~~i~~~l~~----------~~~v~Tv~~~qG~E~d~vi~s~~~~~~~~~~g~~~~~~~l 71 (118)
|++.|+++++|||||||++|+..|++.+.. .+.|+|||+|||+|+|+||+++++++.....||+.|++|+
T Consensus 666 L~~~g~~~~dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrL 745 (800)
T 2wjy_A 666 LLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL 745 (800)
T ss_dssp HHHTTCCGGGEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGTTCCEEEEEEECCCCSCCCCCGGGTCHHHH
T ss_pred HHHcCCCcccEEEEeccHHHHHHHHHHHHhcCcccccccCceEEccccccCCCcCCEEEEEecCCCCccccccccCcchh
Confidence 346789999999999999999999988753 6899999999999999999999999887778999999999
Q ss_pred hhhhhhhhcceEEEechhHHHHHhcCCCCCCcchHhhccc
Q psy1354 72 TVAISRAKHKLIILGDLQVIIAIVNCPNTGRYGNLGQIPG 111 (118)
Q Consensus 72 nvaltRAk~~livvg~~~~l~~~~~~~~~~~~~~~~~l~~ 111 (118)
|||+||||++|+|||++..| .....|.++++
T Consensus 746 NVAlTRAk~~LiIvG~~~~l---------~~~~~w~~ll~ 776 (800)
T 2wjy_A 746 NVALTRARYGVIIVGNPKAL---------SKQPLWNHLLN 776 (800)
T ss_dssp HHHHTSEEEEEEEEECHHHH---------TSSHHHHHHHH
T ss_pred hhhHHhhhccEEEEECHHHh---------ccCHHHHHHHH
Confidence 99999999999999999999 44555655554
No 4
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.3e-25 Score=182.40 Aligned_cols=101 Identities=29% Similarity=0.512 Sum_probs=90.6
Q ss_pred cccCCCCCCcEEEEcCcHHHHHHHHHHhcc----------CceecccCCCCCccccEEEEEcccCCCCccccccCCcCch
Q psy1354 2 SLISGIPTDHIGVIATYRNQVSLLKRLLDK----------DIEINTVDQYQGRDKSIILYSSTCTSKSKESKILNDRKRL 71 (118)
Q Consensus 2 l~~~g~~~~~I~Iitpy~~Q~~~i~~~l~~----------~~~v~Tv~~~qG~E~d~vi~s~~~~~~~~~~g~~~~~~~l 71 (118)
|++.|+++++|||||||++|+..|++.|.. .+.|+|||+|||+|+|+||+++++++.....||+.+++|+
T Consensus 668 L~~~g~~~~~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrL 747 (802)
T 2xzl_A 668 LFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRL 747 (802)
T ss_dssp HHHTTCCGGGEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHHTTCCEEEEEEECCCCCTTCCCGGGGCHHHH
T ss_pred HHHcCCCcccEEEEcccHHHHHHHHHHHHHccccccccccceEEcchhhcCCCccCEEEEEeccCCCCCCcccccCccce
Confidence 346789999999999999999999988753 6999999999999999999999999887789999999999
Q ss_pred hhhhhhhhcceEEEechhHHHHHhcCCCCCCcchHhhccc
Q psy1354 72 TVAISRAKHKLIILGDLQVIIAIVNCPNTGRYGNLGQIPG 111 (118)
Q Consensus 72 nvaltRAk~~livvg~~~~l~~~~~~~~~~~~~~~~~l~~ 111 (118)
|||+||||++|+|||++..| +....|.++++
T Consensus 748 NVAlTRAk~~LiIvg~~~~l---------~~~~~w~~ll~ 778 (802)
T 2xzl_A 748 NVGLTRAKYGLVILGNPRSL---------ARNTLWNHLLI 778 (802)
T ss_dssp HHHHSSEEEEEEEEECHHHH---------TTSHHHHHHHH
T ss_pred eeeHhhhhCeEEEEECHHHh---------ccChHHHHHHH
Confidence 99999999999999999999 55566666654
No 5
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.34 E-value=1.3e-12 Score=90.66 Aligned_cols=77 Identities=16% Similarity=0.162 Sum_probs=64.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHhcc-----------------CceecccCCCCCccccEEEEEcccCCCCccccccCCcCch
Q psy1354 9 TDHIGVIATYRNQVSLLKRLLDK-----------------DIEINTVDQYQGRDKSIILYSSTCTSKSKESKILNDRKRL 71 (118)
Q Consensus 9 ~~~I~Iitpy~~Q~~~i~~~l~~-----------------~~~v~Tv~~~qG~E~d~vi~s~~~~~~~~~~g~~~~~~~l 71 (118)
.++|+||++.+.|...+.+.|.. .+.+.|+|.++|.|+|.||+....... .....+.+.+
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~~~---~~~~~~~~ll 137 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQEN---YQREDERQLL 137 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTT---SCSGGGHHHH
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCccc---CCChhhhcee
Confidence 68999999999999999888754 478999999999999999999765542 1124468899
Q ss_pred hhhhhhhhcceEEEech
Q psy1354 72 TVAISRAKHKLIILGDL 88 (118)
Q Consensus 72 nvaltRAk~~livvg~~ 88 (118)
|||+||||+.|++++..
T Consensus 138 Yva~TRA~~~l~~~~~~ 154 (174)
T 3dmn_A 138 YTICSRAMHELTLVAVG 154 (174)
T ss_dssp HHHHTTEEEEEEEEEES
T ss_pred EEEecCcccEEEEEeCC
Confidence 99999999999999753
No 6
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.00 E-value=9e-11 Score=94.70 Aligned_cols=73 Identities=16% Similarity=0.107 Sum_probs=60.9
Q ss_pred ecccCCCCCccccEEEEEcccCCCCccccccCCcCchhhhhhhhhcceEEEechhHHHHHhcCCCCCCcchHhhcccc
Q psy1354 35 INTVDQYQGRDKSIILYSSTCTSKSKESKILNDRKRLTVAISRAKHKLIILGDLQVIIAIVNCPNTGRYGNLGQIPGT 112 (118)
Q Consensus 35 v~Tv~~~qG~E~d~vi~s~~~~~~~~~~g~~~~~~~lnvaltRAk~~livvg~~~~l~~~~~~~~~~~~~~~~~l~~~ 112 (118)
..|||++||.|+|.||+...... ..+.+++++|||+||||+.++++|+++.+..........+++.+.+.|..
T Consensus 493 A~TIHksQGsEfd~Vil~l~~~~-----~~~l~r~LlYvAiTRAk~~l~lvg~~~~l~~av~~~~~~R~t~L~~~l~~ 565 (574)
T 3e1s_A 493 ALTVHRAQGSEWGTVLGVLHEAH-----MPMLSRNLVYTALTRARDRFFSAGSASAWQIAAARQREARNTALLERIRA 565 (574)
T ss_dssp EEEHHHHTTCCEEEEEEEECGGG-----GGGCCHHHHHHHHHTEEEEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_pred eeeHHHhCCccCCeEEEEcCCcc-----ccccccceEEEEeeeeeeEEEEEECHHHHHHHHhCCCCCCchhHHHHHHH
Confidence 46999999999999999876442 24668899999999999999999999999987776655888888777653
No 7
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.59 E-value=5.3e-08 Score=78.88 Aligned_cols=101 Identities=18% Similarity=0.203 Sum_probs=59.7
Q ss_pred CCCCCCcEEEEcCcHHHH-HHH-------HHHhcc------CceecccCCCCCccccEEEEEcccCCCCccccccCCcCc
Q psy1354 5 SGIPTDHIGVIATYRNQV-SLL-------KRLLDK------DIEINTVDQYQGRDKSIILYSSTCTSKSKESKILNDRKR 70 (118)
Q Consensus 5 ~g~~~~~I~Iitpy~~Q~-~~i-------~~~l~~------~~~v~Tv~~~qG~E~d~vi~s~~~~~~~~~~g~~~~~~~ 70 (118)
.|+-..+||+|++..... -.+ ...... ...+.|||+.||.|+|.|++....... ...+.+.
T Consensus 491 ~gl~NGdiG~V~~~~~~l~v~f~~~dg~~~~~~~~~l~~l~~~~a~TihksqG~e~~~v~~~~~~~~~-----~~~~~~~ 565 (608)
T 1w36_D 491 LGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT-----PVVTREL 565 (608)
T ss_dssp --------------------------------CCSCCCSCSSCSEEETTTTTTCCBSEEEEECCSSCC-----SSSCHHH
T ss_pred hcccCCCeEEEEEcCCeEEEEEECCCCcEEEechHHCCccceEEEEEEEecccccCCeEEEEeCCCcc-----chhhhhh
Confidence 356677888888764221 001 000011 577889999999999999998754332 2347889
Q ss_pred hhhhhhhhhcceEEEechhHHHHHhcCCCCCCcchHhhccc
Q psy1354 71 LTVAISRAKHKLIILGDLQVIIAIVNCPNTGRYGNLGQIPG 111 (118)
Q Consensus 71 lnvaltRAk~~livvg~~~~l~~~~~~~~~~~~~~~~~l~~ 111 (118)
+|||+||||+.++++++...|....... ..+++.+.+.+.
T Consensus 566 ~Yva~tRa~~~l~l~~~~~~l~~av~~~-~~R~s~L~~rl~ 605 (608)
T 1w36_D 566 VYTAVTRARRRLSLYADERILSAAIATR-TERRSGLAALFS 605 (608)
T ss_dssp HHHHHTTBSSCEEEECCTTHHHHHHHCC-CCCCCSHHHHTT
T ss_pred HHhhhhhhhceEEEEECHHHHHHHHhCC-CcCchHHHHHhh
Confidence 9999999999999999999998766655 466666666654
No 8
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=98.13 E-value=1.7e-06 Score=68.12 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=53.0
Q ss_pred EEEcCcHHHHHHHHHHhccCce-ecccCCCCCccccEEEEEcccCCCCccccccCCcCchhhhhhhhhcceEEEec
Q psy1354 13 GVIATYRNQVSLLKRLLDKDIE-INTVDQYQGRDKSIILYSSTCTSKSKESKILNDRKRLTVAISRAKHKLIILGD 87 (118)
Q Consensus 13 ~Iitpy~~Q~~~i~~~l~~~~~-v~Tv~~~qG~E~d~vi~s~~~~~~~~~~g~~~~~~~lnvaltRAk~~livvg~ 87 (118)
-|||+..+.+..+... ... +.|++++||.|+|.|.+-...+.+ ...+..++..++||+||||+.|.++.-
T Consensus 351 ~iLtftq~~k~~L~~~---G~~~~~Tv~e~QG~tf~~Vtlvr~~~~~--~~l~~~~~~~~~VALTRh~~~L~~~tv 421 (446)
T 3vkw_A 351 KILTFTQSDKEALLSR---GYADVHTVHEVQGETYADVSLVRLTPTP--VSIIARDSPHVLVSLSRHTKSLKYYTV 421 (446)
T ss_dssp EEEESSHHHHHHHHTT---TCCSCEETGGGTTCCEEEEEEEECCCSC--CTTCSTTCHHHHHHHSSEEEEEEEEES
T ss_pred eEEEcCHHHHHHHHHh---CCCCccCHHHcCCcccCeEEEEECCCCC--cccccCCccceEEEeecCCCEEEEEEe
Confidence 6778888888777765 555 889999999999998885443222 111234788999999999999998864
No 9
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.94 E-value=1.1e-06 Score=68.61 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=38.0
Q ss_pred ceecccCCCCCccccEEEEEcccCCCCccccccCCcCchhhhhhhhhcceEEE
Q psy1354 33 IEINTVDQYQGRDKSIILYSSTCTSKSKESKILNDRKRLTVAISRAKHKLIIL 85 (118)
Q Consensus 33 ~~v~Tv~~~qG~E~d~vi~s~~~~~~~~~~g~~~~~~~lnvaltRAk~~livv 85 (118)
+.+.|+|+.||.|+|.|++....... .....+.+.+|||+||||+.|+++
T Consensus 410 ~~~~t~h~~kG~e~~~v~~~~~~~~~---~~~~~~~~~~yva~tRa~~~l~~~ 459 (459)
T 3upu_A 410 LPASTFHKAQGMSVDRAFIYTPCIHY---ADVELAQQLLYVGVTRGRYDVFYV 459 (459)
T ss_dssp SSEEETGGGTTCCEEEEEEECGGGGG---SCHHHHHHHHHHHHHHEEEEEEEC
T ss_pred EEEEEEEeccCCCCCEEEEecCCCCC---cChHHHhheeeeeecceeeEEEeC
Confidence 66789999999999999997543221 111223677999999999999875
No 10
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.72 E-value=8.7e-06 Score=66.15 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=43.8
Q ss_pred CceecccCCCCCccccEEEEEcccCCCCcc------ccccCCcCchhhhhhhhhcceEEEech
Q psy1354 32 DIEINTVDQYQGRDKSIILYSSTCTSKSKE------SKILNDRKRLTVAISRAKHKLIILGDL 88 (118)
Q Consensus 32 ~~~v~Tv~~~qG~E~d~vi~s~~~~~~~~~------~g~~~~~~~lnvaltRAk~~livvg~~ 88 (118)
.|.+.|+|+.+|.|+|+|++.....+.-.. .....+.+.++||+||||+.|++....
T Consensus 551 ~V~l~TiH~sKGLEf~~Vfl~g~~eg~~P~~~~~~~~~~~EErRL~YVA~TRAk~~L~ls~~~ 613 (673)
T 1uaa_A 551 QVQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKELTFTLCK 613 (673)
T ss_dssp SEEEEESTTTSSCCEEEEEECCCBSSTTTTHHHHTTTCCHHHHHHHHHHHHTEEEEEEEEECS
T ss_pred eeEEEeeeecccccCCEEEEecCcCCCCCCcccCcchhHHHHHHHHHHHHHhhhheEEEEEec
Confidence 699999999999999999998765542111 012234678899999999999998754
No 11
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=97.64 E-value=2e-05 Score=67.96 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=40.6
Q ss_pred CceecccCCCCCccccEEEEEcccCCCCcccc----------------------------ccCCcCchhhhhhhhhcceE
Q psy1354 32 DIEINTVDQYQGRDKSIILYSSTCTSKSKESK----------------------------ILNDRKRLTVAISRAKHKLI 83 (118)
Q Consensus 32 ~~~v~Tv~~~qG~E~d~vi~s~~~~~~~~~~g----------------------------~~~~~~~lnvaltRAk~~li 83 (118)
.|.+.|||+.+|.|+++|++...........+ ...+.+.+|||+||||+.|+
T Consensus 735 ~V~ImTIHkSKGLEfpvVfl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~Ee~RLlYVAlTRAk~~L~ 814 (1180)
T 1w36_B 735 LVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCS 814 (1180)
T ss_dssp SEEEEETTTTSSCCEEEEEETTTTCCCCCCSCEEECTTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred eEEEEEEeccCCCcCCEEEEeccccCCCCCCCeeecCCCcceeecCCCcHHHHHHHHHHHHHHHhhHHhhhhcchhhheE
Confidence 59999999999999999999755432110000 01235678999999999999
Q ss_pred EEe
Q psy1354 84 ILG 86 (118)
Q Consensus 84 vvg 86 (118)
+..
T Consensus 815 l~~ 817 (1180)
T 1w36_B 815 LGV 817 (1180)
T ss_dssp EEE
T ss_pred EEe
Confidence 974
No 12
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.56 E-value=1.4e-05 Score=65.70 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=43.1
Q ss_pred CceecccCCCCCccccEEEEEcccCCCCccc-------cccCCcCchhhhhhhhhcceEEEec
Q psy1354 32 DIEINTVDQYQGRDKSIILYSSTCTSKSKES-------KILNDRKRLTVAISRAKHKLIILGD 87 (118)
Q Consensus 32 ~~~v~Tv~~~qG~E~d~vi~s~~~~~~~~~~-------g~~~~~~~lnvaltRAk~~livvg~ 87 (118)
.+.+.|+|+.+|.|+++|++.....+.-... ....+.+.++||+||||+.|++...
T Consensus 558 ~V~lmTiH~aKGLEf~~Vfl~g~~eg~~P~~~~~~~~~~~eEErRL~YVaiTRA~~~L~ls~~ 620 (724)
T 1pjr_A 558 AVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAEEELVLTSA 620 (724)
T ss_dssp CEEEEEGGGGTTCCEEEEEECCCBTBTTTBGGGGTCHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eEEEEeeehhcCCCCCEEEEeCCCCCCCCccccCCChHHHHHHHHHHHHHHHHHhheEEEEee
Confidence 6999999999999999999987655421110 1223467789999999999999865
No 13
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.54 E-value=3e-05 Score=62.23 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=43.2
Q ss_pred CceecccCCCCCccccEEEEEcccCCCCcc-------ccccCCcCchhhhhhhhhcceEEEech
Q psy1354 32 DIEINTVDQYQGRDKSIILYSSTCTSKSKE-------SKILNDRKRLTVAISRAKHKLIILGDL 88 (118)
Q Consensus 32 ~~~v~Tv~~~qG~E~d~vi~s~~~~~~~~~-------~g~~~~~~~lnvaltRAk~~livvg~~ 88 (118)
.+.+.|+|+.+|.|+|+|++.....+.-.. ...-.+++.++||+||||+.|++....
T Consensus 553 ~V~l~TiH~aKGLEf~~Vfl~gl~eg~~P~~~~~~~~~~~eeErrL~YVa~TRAk~~L~ls~~~ 616 (647)
T 3lfu_A 553 AVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAE 616 (647)
T ss_dssp CEEEEETGGGTTCCEEEEEECCCBTBTTTBTTCC--CTTHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cEEEEeeecccCccCCEEEEeCCcCCCCCCcccccCchhHHHHHHHHHHHHhHHhhheEEEEec
Confidence 599999999999999999998766552110 111223578899999999999998643
No 14
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.40 E-value=7.8e-05 Score=64.66 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=43.1
Q ss_pred CceecccCCCCCccccEEEEEcccCCCC-----------cccc----c--------------------------cCCcCc
Q psy1354 32 DIEINTVDQYQGRDKSIILYSSTCTSKS-----------KESK----I--------------------------LNDRKR 70 (118)
Q Consensus 32 ~~~v~Tv~~~qG~E~d~vi~s~~~~~~~-----------~~~g----~--------------------------~~~~~~ 70 (118)
.|.+.|||+.+|.|+++|++.....+-. ...| + ..+.+.
T Consensus 787 ~V~ImTIH~SKGLEfpvVfl~gl~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~EE~RL 866 (1232)
T 3u4q_A 787 VVRLMTIHSSKGLEFPVVFVAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRV 866 (1232)
T ss_dssp CEEEEEGGGTTTCCEEEEEEECTTSBCCCTTSCSSEEEETTTEEEECEEETTTTEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEecchhccCCCCCEEEEccccccCCCcCCCCCeeeccccCcCcceecchhccccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999997653210 0001 0 002356
Q ss_pred hhhhhhhhhcceEEEechhH
Q psy1354 71 LTVAISRAKHKLIILGDLQV 90 (118)
Q Consensus 71 lnvaltRAk~~livvg~~~~ 90 (118)
+|||+||||+.|++.|....
T Consensus 867 LYVAlTRAk~~L~l~~~~~~ 886 (1232)
T 3u4q_A 867 LYVALTRAKEKLFLIGSCKD 886 (1232)
T ss_dssp HHHHHHTEEEEEEEEEECSC
T ss_pred HHHHHHhhccEEEEEEEeCc
Confidence 78999999999999997543
No 15
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=94.96 E-value=0.025 Score=48.78 Aligned_cols=57 Identities=16% Similarity=0.029 Sum_probs=42.9
Q ss_pred CceecccCCCCCccccEEEEEcccCCC--C--ccccc--------cC-------CcCchhhhhhhhhcceEEEech
Q psy1354 32 DIEINTVDQYQGRDKSIILYSSTCTSK--S--KESKI--------LN-------DRKRLTVAISRAKHKLIILGDL 88 (118)
Q Consensus 32 ~~~v~Tv~~~qG~E~d~vi~s~~~~~~--~--~~~g~--------~~-------~~~~lnvaltRAk~~livvg~~ 88 (118)
.|.+.|+|...|.|+++|++.....+. + ...+| .. +.+.++||+||||+.|++....
T Consensus 658 ~V~l~Tlh~aKgLef~vVfllGlnEG~fP~~~~~~~~dll~~~l~~~dr~~~eEERrLfYvAltrA~~~L~LSy~~ 733 (1122)
T 1w36_C 658 PVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIG 733 (1122)
T ss_dssp SCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred eEEEeccccccCCCcCEEEEeCCCcccCCCCCCCCcHHHhhcccCCCchhhhHHHHHHHHHHHHhhcCeEEEEEeC
Confidence 699999999999999999999776661 1 11222 01 2445899999999999998653
No 16
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=93.83 E-value=0.04 Score=47.46 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=42.4
Q ss_pred CceecccCCCCCccccEEEEEcccCC--C--CccccccC------------------------CcCchhhhhhhhhcceE
Q psy1354 32 DIEINTVDQYQGRDKSIILYSSTCTS--K--SKESKILN------------------------DRKRLTVAISRAKHKLI 83 (118)
Q Consensus 32 ~~~v~Tv~~~qG~E~d~vi~s~~~~~--~--~~~~g~~~------------------------~~~~lnvaltRAk~~li 83 (118)
.+.+.|+|..+|.|+++|++.....+ + ....+|+. +...++||+|||+..|+
T Consensus 587 ~V~i~t~~~argl~f~~V~l~G~~eg~~P~~~~~~~~l~~~~R~~l~~~g~~l~~~~~~~~~eer~l~y~altrA~~~L~ 666 (1166)
T 3u4q_B 587 QVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSDRLY 666 (1166)
T ss_dssp CEEEEESSSCCCSSCSEEEEECCBTTTTTTCCCCCSSSCHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHTSCSSEEE
T ss_pred EEEEecCcccccCCCCEEEEeCCCcCCCCCCCCCCCCCCHHHHHHHHhCCCcCCCchHHHHHHhHHHHHHHHhcccCeEE
Confidence 69999999999999999999987666 1 11233322 12348999999999999
Q ss_pred EEec
Q psy1354 84 ILGD 87 (118)
Q Consensus 84 vvg~ 87 (118)
+.-.
T Consensus 667 lsy~ 670 (1166)
T 3u4q_B 667 VSYP 670 (1166)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8743
No 17
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=75.20 E-value=0.59 Score=34.64 Aligned_cols=77 Identities=14% Similarity=0.314 Sum_probs=53.1
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHhccCceecccCCCCCccccEEEEEcccCCCCccccccCCcCchhhhhhhhhc--ceE
Q psy1354 6 GIPTDHIGVIATYRNQVSLLKRLLDKDIEINTVDQYQGRDKSIILYSSTCTSKSKESKILNDRKRLTVAISRAKH--KLI 83 (118)
Q Consensus 6 g~~~~~I~Iitpy~~Q~~~i~~~l~~~~~v~Tv~~~qG~E~d~vi~s~~~~~~~~~~g~~~~~~~lnvaltRAk~--~li 83 (118)
..+...++||.||+.+.+.|+.+|.. +-..-+=|+.+..|.|+-=+...+ ++-...+||++.-|.+ -++
T Consensus 47 c~~~~kvAIIIPyRdR~~hL~~fl~~---lhp~L~rQ~l~y~I~VieQ~~~~~------FNRa~LlNvGf~ea~~~~d~~ 117 (287)
T 3lw6_A 47 GASVHKMALLVPFRDRFEELLQFVPH---MTAFLKRQGVAHHIFVLNQVDRFR------FNRASLINVGFQFASDVYDYI 117 (287)
T ss_dssp CCCCCEEEEEEEESSCHHHHHHHHHH---HHHHHHHTTCEEEEEEEEECSSSC------CCHHHHHHHHHHHSCTTCCEE
T ss_pred cCCcceEEEEEEeCCHHHHHHHHHHH---HHHHHHHcCCceEEEEEecCCCCc------cchhheecccHHHHhccCCEE
Confidence 35778999999999999888877764 001111266677777776543322 3334578999988764 778
Q ss_pred EEechhHH
Q psy1354 84 ILGDLQVI 91 (118)
Q Consensus 84 vvg~~~~l 91 (118)
|+.|.+++
T Consensus 118 ifHDVDLl 125 (287)
T 3lw6_A 118 AMHDVDLL 125 (287)
T ss_dssp EEECTTEE
T ss_pred EEeccccc
Confidence 99999888
No 18
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=73.35 E-value=1.5 Score=34.83 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=26.4
Q ss_pred ccCCCCCCcEEEEcCcHHHHHHHHHHhcc
Q psy1354 3 LISGIPTDHIGVIATYRNQVSLLKRLLDK 31 (118)
Q Consensus 3 ~~~g~~~~~I~Iitpy~~Q~~~i~~~l~~ 31 (118)
++.|+++++|+||++++.|...+...|..
T Consensus 341 ~~~g~~~~diaVL~r~~~~~~~l~~~l~~ 369 (647)
T 3lfu_A 341 QDNGGALAECAILYRSNAQSRVLEEALLQ 369 (647)
T ss_dssp HHTTCCGGGEEEEESSGGGHHHHHHHHHH
T ss_pred HHcCCCccCEEEEEeCchhHHHHHHHHHH
Confidence 46789999999999999999999999887
No 19
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=71.02 E-value=3.6 Score=32.16 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=53.0
Q ss_pred CcEEEEcCcHHHHHHHHHHhcc-------CceecccCCC--CCc-----cccEEEEEcccCCCCccccccCCcCchhh--
Q psy1354 10 DHIGVIATYRNQVSLLKRLLDK-------DIEINTVDQY--QGR-----DKSIILYSSTCTSKSKESKILNDRKRLTV-- 73 (118)
Q Consensus 10 ~~I~Iitpy~~Q~~~i~~~l~~-------~~~v~Tv~~~--qG~-----E~d~vi~s~~~~~~~~~~g~~~~~~~lnv-- 73 (118)
+.+.|+||-++-+..+++.+.. ...+.|+|+| ++. +.|++|++-..-- ++..+..
T Consensus 185 ~~~lVlTpT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~---------~~~~l~~l~ 255 (446)
T 3vkw_A 185 EEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLML---------HTGCVNFLV 255 (446)
T ss_dssp TTCEEEESCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGS---------CHHHHHHHH
T ss_pred CCeEEEeCCHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccC---------CHHHHHHHH
Confidence 6779999999999999888863 4678999987 332 3899999864322 2233322
Q ss_pred hhhhhhcceEEEechhHHHHH
Q psy1354 74 AISRAKHKLIILGDLQVIIAI 94 (118)
Q Consensus 74 altRAk~~livvg~~~~l~~~ 94 (118)
++.++ ..++++||+..+.+.
T Consensus 256 ~~~~~-~~vilvGD~~Qlp~v 275 (446)
T 3vkw_A 256 EMSLC-DIAYVYGDTQQIPYI 275 (446)
T ss_dssp HHTTC-SEEEEEECTTSCCCC
T ss_pred HhCCC-CEEEEecCcccccCc
Confidence 23444 789999999998443
No 20
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=46.59 E-value=5.5 Score=32.02 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=29.1
Q ss_pred CCCCCCcEEEEcCcHHHHHHHHHHhcc--------CceecccCCC
Q psy1354 5 SGIPTDHIGVIATYRNQVSLLKRLLDK--------DIEINTVDQY 41 (118)
Q Consensus 5 ~g~~~~~I~Iitpy~~Q~~~i~~~l~~--------~~~v~Tv~~~ 41 (118)
.|++++.|.++|+-+.-+..+++.+.. .+.|+|.|+|
T Consensus 43 ~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~~v~Tfhs~ 87 (673)
T 1uaa_A 43 CGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTL 87 (673)
T ss_dssp HCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTSEEEEHHHH
T ss_pred cCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCCEEEeHHHH
Confidence 388999999999988877777766543 4788888875
No 21
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=43.84 E-value=10 Score=27.27 Aligned_cols=23 Identities=9% Similarity=0.351 Sum_probs=18.4
Q ss_pred CCcEEEEcCcHHHHH-HHHHHhcc
Q psy1354 9 TDHIGVIATYRNQVS-LLKRLLDK 31 (118)
Q Consensus 9 ~~~I~Iitpy~~Q~~-~i~~~l~~ 31 (118)
.+.|||+|||..+.. .+++.+..
T Consensus 146 ~~rvgvltp~~~~~~~~~~~~l~~ 169 (273)
T 2xed_A 146 AQRVALVTPYMRPLAEKVVAYLEA 169 (273)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHH
T ss_pred CCeEEEEcCChhhhHHHHHHHHHH
Confidence 378999999999865 77777765
No 22
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=39.99 E-value=13 Score=30.26 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=24.8
Q ss_pred CCCCCCcEEEEcCcHHHHHHHHHHhcc
Q psy1354 5 SGIPTDHIGVIATYRNQVSLLKRLLDK 31 (118)
Q Consensus 5 ~g~~~~~I~Iitpy~~Q~~~i~~~l~~ 31 (118)
.|++.++|+||++.++|...+.+.|..
T Consensus 347 ~g~~~~diAIL~R~~~~~~~le~~L~~ 373 (724)
T 1pjr_A 347 GERRYRDFAVLYRTNAQSRVMEEMLLK 373 (724)
T ss_dssp TSCCGGGEEEEESSGGGHHHHHHHHHH
T ss_pred cCCChhheeeeeecchhHHHHHHHHHH
Confidence 689999999999999999999988876
No 23
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=35.93 E-value=46 Score=22.88 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=42.4
Q ss_pred cEEEEcCcHHHHHHHHHHhccCceecccCCCCCccccEEEEEcccCCCCccccccCCcCchhhhhhhhhcceEEEechhH
Q psy1354 11 HIGVIATYRNQVSLLKRLLDKDIEINTVDQYQGRDKSIILYSSTCTSKSKESKILNDRKRLTVAISRAKHKLIILGDLQV 90 (118)
Q Consensus 11 ~I~Iitpy~~Q~~~i~~~l~~~~~v~Tv~~~qG~E~d~vi~s~~~~~~~~~~g~~~~~~~lnvaltRAk~~livvg~~~~ 90 (118)
.|.||++|+.. +.+++.+.. + ..++. -|.. .+++|+.-..+.. .|+ ..-.|.++..|+.-.+++.|++.
T Consensus 17 ~iSII~~yN~~-~~l~~~l~s-l-~~sl~-~q~~-~EiIVVDn~s~d~---~g~---a~a~N~Gi~~A~g~yl~fln~D~ 85 (249)
T 2nxv_A 17 MFSVCSLVRDQ-AKYDRLLES-F-ERFGF-TPDK-AEFLAADNREGNQ---FHG---FSWHKQMLPRCKGRYVIFCHEDV 85 (249)
T ss_dssp SEEEEEEESCH-HHHHHHHHH-H-HHTTC-CTTT-EEEEEEECTTSCS---CCT---TTHHHHHGGGCCSSEEEEEETTE
T ss_pred eEEEEEeeCCH-HHHHHHHHH-H-HHhcc-CCCc-EEEEEEECCCCCc---ccH---HHHHHHHHHhcCCCEEEEECCCc
Confidence 57888779884 456665541 0 00111 1211 6677776432221 121 35679999999999999999887
Q ss_pred H
Q psy1354 91 I 91 (118)
Q Consensus 91 l 91 (118)
.
T Consensus 86 ~ 86 (249)
T 2nxv_A 86 E 86 (249)
T ss_dssp E
T ss_pred c
Confidence 6
No 24
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=32.61 E-value=12 Score=27.06 Aligned_cols=72 Identities=22% Similarity=0.301 Sum_probs=44.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHHhccCceecccC---CCCCccccEEEEEcccCCCCccccccCCcCchhhhh----hhhhc
Q psy1354 8 PTDHIGVIATYRNQVSLLKRLLDKDIEINTVD---QYQGRDKSIILYSSTCTSKSKESKILNDRKRLTVAI----SRAKH 80 (118)
Q Consensus 8 ~~~~I~Iitpy~~Q~~~i~~~l~~~~~v~Tv~---~~qG~E~d~vi~s~~~~~~~~~~g~~~~~~~lnval----tRAk~ 80 (118)
+...|+||.|+....+.|...|.. +. .-+.....++|+....+ .+| .-....|.++ ..|+.
T Consensus 63 ~~~~VSIIIP~yN~~~~L~~~L~s------l~~~l~q~~~~~EIiVVdds~d-----~~f-~~a~a~N~G~~~al~~A~g 130 (287)
T 2fy7_A 63 SPHKVAIIIPFRNRQEHLKYWLYY------LHPVLQRQQLDYGIYVINQAGD-----TIF-NRAKLLNVGFQEALKDYDY 130 (287)
T ss_dssp CSCEEEEEEEESSCHHHHHHHHHH------HHHHHHHTTCEEEEEEEEECSS-----SCC-CHHHHHHHHHHHHHHHSCC
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHH------HHHHHHHhcCCceEEEEEeCCC-----Ccc-chhhhhhhHHHHHHHhCCC
Confidence 345799999965566666666542 21 11234667777776221 112 1123468888 78888
Q ss_pred ceEEEechhHH
Q psy1354 81 KLIILGDLQVI 91 (118)
Q Consensus 81 ~livvg~~~~l 91 (118)
-++++.|.+.+
T Consensus 131 d~i~flD~D~i 141 (287)
T 2fy7_A 131 TCFVFSDVDLI 141 (287)
T ss_dssp CEEEEECTTEE
T ss_pred CEEEEECCCcc
Confidence 99999998876
No 25
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=31.06 E-value=1.3e+02 Score=20.54 Aligned_cols=51 Identities=8% Similarity=0.173 Sum_probs=39.6
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHhcc-CceecccCCCCCccccEEEEEcccCC
Q psy1354 7 IPTDHIGVIATYRNQVSLLKRLLDK-DIEINTVDQYQGRDKSIILYSSTCTS 57 (118)
Q Consensus 7 ~~~~~I~Iitpy~~Q~~~i~~~l~~-~~~v~Tv~~~qG~E~d~vi~s~~~~~ 57 (118)
.....|.|+.+-......+.+.|.. +..+.+++.-+....|++|+......
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~ii~d~~~~~ 60 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQEPTPEDVLITDEVVSK 60 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSCCCCTTCEEEEESSCSC
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCCCCCcCcEEEEcCCCcc
Confidence 5567899999999999999999988 66666655545667888888865443
No 26
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=25.55 E-value=27 Score=30.39 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=28.1
Q ss_pred CCCCCcEEEEcCcHHHHHHHHHHhcc-----------------------CceecccCCC
Q psy1354 6 GIPTDHIGVIATYRNQVSLLKRLLDK-----------------------DIEINTVDQY 41 (118)
Q Consensus 6 g~~~~~I~Iitpy~~Q~~~i~~~l~~-----------------------~~~v~Tv~~~ 41 (118)
++++++|.++|+-++-+..+++.+.. .+.++|+|+|
T Consensus 54 ~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~T~hsf 112 (1232)
T 3u4q_A 54 PIDVDRLLVVTFTNASAAEMKHRIAEALEKELVQRPGSLHIRRQLSLLNRASISTLHSF 112 (1232)
T ss_dssp CCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHTTTSEEECHHHH
T ss_pred CCCccceEEEeccHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHhccCCCeEEeHHHH
Confidence 36899999999998888777755544 3688888877
No 27
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=24.33 E-value=49 Score=22.44 Aligned_cols=23 Identities=4% Similarity=-0.026 Sum_probs=18.4
Q ss_pred CCcEEEEcCcHHHHH-HHHHHhcc
Q psy1354 9 TDHIGVIATYRNQVS-LLKRLLDK 31 (118)
Q Consensus 9 ~~~I~Iitpy~~Q~~-~i~~~l~~ 31 (118)
.+.|||+|||..+.. .+++.+..
T Consensus 108 ~~rvgvlt~~~~~~~~~~~~~l~~ 131 (223)
T 2dgd_A 108 VRKLWIGTPYIKERTLEEVEWWRN 131 (223)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCchHHHHHHHHHHHh
Confidence 378999999999955 77777764
Done!