RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1354
         (118 letters)



>d1w36d2 c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha chain
           (RecD) {Escherichia coli [TaxId: 562]}
          Length = 246

 Score = 39.4 bits (91), Expect = 2e-05
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 37  TVDQYQGRDKSIILYSSTCTSKSKESKILNDRKRLTVAISRAKHKLIILGDLQVIIAIVN 96
           TV + QG +     +         +   +  R+ +  A++RA+ +L +  D +++ A + 
Sbjct: 177 TVHKSQGSE-----FDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA 231

Query: 97  CPNTGRYGNLGQI 109
                R   L  +
Sbjct: 232 TRTE-RRSGLAAL 243


>d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain
           (RecB), N-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 395

 Score = 29.2 bits (64), Expect = 0.096
 Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 60  KESKILNDRKRLT-VAISRAKHKLII 84
            E++ L +  RL  VA++R+     +
Sbjct: 305 AEAERLAEDLRLLYVALTRSVWHCSL 330


>d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia
           coli, RepD [TaxId: 562]}
          Length = 333

 Score = 29.0 bits (63), Expect = 0.11
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 1   MSLISGIPTDHIGVIATYRNQVSLLKRLLDKDIEINTVDQYQGRDKSIILYSSTCTSKSK 60
           ++  +       G      +QV L+     K +E   V      +  +   SS       
Sbjct: 224 VTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSI-----D 278

Query: 61  ESKILNDRKRLTVAISRAKHKLIIL 85
           E  I  +R+   V I+RA+ +L   
Sbjct: 279 EDNIDEERRLAYVGITRAQKELTFT 303


>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
           stearothermophilus, PcrA [TaxId: 1422]}
          Length = 623

 Score = 28.4 bits (62), Expect = 0.19
 Identities = 7/28 (25%), Positives = 17/28 (60%)

Query: 57  SKSKESKILNDRKRLTVAISRAKHKLII 84
           S   + ++  +R+   V I+RA+ +L++
Sbjct: 562 SLEDDDEMEEERRLAYVGITRAEEELVL 589


>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus
           stearothermophilus, PcrA [TaxId: 1422]}
          Length = 333

 Score = 28.2 bits (61), Expect = 0.20
 Identities = 7/28 (25%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 60  KESKILNDRKRLT-VAISRAKHKLIILG 86
           ++   + + +RL  V I+RA+ +L++  
Sbjct: 274 EDDDEMEEERRLAYVGITRAEEELVLTS 301


>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 156

 Score = 27.5 bits (59), Expect = 0.30
 Identities = 6/27 (22%), Positives = 12/27 (44%)

Query: 15 IATYRNQVSLLKRLLDKDIEINTVDQY 41
           A  R  +  L  LL  ++ +N  + +
Sbjct: 7  SAAARGDLEQLTSLLQNNVNVNAQNGF 33


>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 408

 Score = 26.5 bits (57), Expect = 0.93
 Identities = 5/27 (18%), Positives = 13/27 (48%)

Query: 15 IATYRNQVSLLKRLLDKDIEINTVDQY 41
          +A++   + ++K LL +    N  +  
Sbjct: 6  VASFMGHLPIVKNLLQRGASPNVSNVK 32


>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 285

 Score = 26.1 bits (56), Expect = 1.2
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 16 ATYRNQVSLLKRLLDKDIEINTVDQYQGR 44
          A     V L+++LL+    +N  ++  G 
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGW 40


>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
          MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 291

 Score = 24.3 bits (51), Expect = 4.9
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 16 ATYRNQVSLLKRLLDKDIEINTVDQY 41
          A        + RLL++  +IN  +  
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVD 72


>d1cexa_ c.69.1.30 (A:) Cutinase {Fungus (Fusarium solani), subsp.
           pisi [TaxId: 169388]}
          Length = 197

 Score = 24.2 bits (52), Expect = 5.1
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 91  IIAIVNCPNTGRYGNLGQIPGTDGNRT 117
           I   V    T    N G+IP    +RT
Sbjct: 125 IAGTVLFGYTKNLQNRGRIPNYPADRT 151


>d1oh1a_ b.61.2.2 (A:) Staphostatin A (SAV1910, SA1726)
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 109

 Score = 23.4 bits (50), Expect = 6.3
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 23 SLLKRLLDKDIEINTVDQYQGRD-KSIILYSSTCTSKSKESKILNDRKRLTVAISR 77
          S LK +L    + + + +Y   + K + LY+   +S   E  I ND K L   ++ 
Sbjct: 39 SPLKFILSTSDDSDYICKYINTEHKQLTLYNKNNSSIVIEIFIPNDNKILLTIMNT 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0443    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 409,887
Number of extensions: 16106
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 14
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.6 bits)