RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13542
(147 letters)
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 71.3 bits (175), Expect = 2e-15
Identities = 45/118 (38%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 15 ENWFET-----SARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLL 69
E WF S + D LEG G++ + GY V L K +D+ L
Sbjct: 168 EGWFAADADTISLKSWDQEELLEGGHGLMVR--GYDPVINTLAKG------LDIR----L 215
Query: 70 KKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAI 127
VTKI GV VT DGT + AD +I V LGVLK+N+I F P LP K AI
Sbjct: 216 NHRVTKIV-RRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAI 272
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 68.6 bits (168), Expect = 2e-14
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLT 125
+L L K V +I++ GV V DG+ Y A ++++VSLGVL+S+LI F PPLP K+
Sbjct: 246 RLKLNKVVREISYS-KNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIE 304
Query: 126 AIE 128
AI
Sbjct: 305 AIY 307
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace amines.
In lower eukaryotes such as aspergillus and in bacteria
the main role of amine oxidases is to provide a source
of ammonium. PAOs in plants, bacteria and protozoa
oxidase spermidine and spermine to an aminobutyral,
diaminopropane and hydrogen peroxide and are involved in
the catabolism of polyamines. Other members of this
family include tryptophan 2-monooxygenase, putrescine
oxidase, corticosteroid binding proteins and
antibacterial glycoproteins.
Length = 444
Score = 65.7 bits (160), Expect = 2e-13
Identities = 29/73 (39%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 62 DLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPP 121
L ++ L V I GV VT DG AD +++TV LGVLK I F+PPLP
Sbjct: 216 LLGGRVRLNTRVRSITKS-GDGVTVTTVDGRTIEADAVIVTVPLGVLKR--ILFLPPLPA 272
Query: 122 KKLTAIELTNLTS 134
K AI S
Sbjct: 273 AKQEAIRNLGFGS 285
>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 64.1 bits (156), Expect = 7e-13
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 12/91 (13%)
Query: 42 GGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILI 101
GY +V + L +P T + L ++VT+I W+ + V + ADG+ +AD +++
Sbjct: 239 KGYLSVIEALASVLPPGT-------IQLGRKVTRIEWQ-DEPVKLHFADGSTMTADHVIV 290
Query: 102 TVSLGVLKSNLIT----FVPPLPPKKLTAIE 128
TVSLGVLK+ + F PPLP K AI
Sbjct: 291 TVSLGVLKAGIGEDSGLFSPPLPDFKTDAIS 321
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 55.6 bits (134), Expect = 9e-10
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 19/97 (19%)
Query: 41 KGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINW---------EDPKGVVVTCADG 91
KGGY NV + L + + + L VT +++ K V V+ ++G
Sbjct: 932 KGGYSNVVESLAEGLD----------IHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNG 981
Query: 92 TQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
+++ D +LITV LG LK+ I F PPLP K ++I+
Sbjct: 982 SEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQ 1018
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 47.8 bits (114), Expect = 3e-07
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 51 LMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKS 110
M Q+ L ++LL + V +I+ +D GV VT D QY AD +L+T+ L +L
Sbjct: 207 GMDQLAEAFAKQLGTRILLNEPVRRID-QDGDGVTVTADDVGQYVADYVLVTIPLAILGQ 265
Query: 111 NLITFVPPLPPKKLTAIELTN 131
I F P LP + A +
Sbjct: 266 --IDFAPLLPAEYKQAAKGVP 284
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 45.8 bits (108), Expect = 2e-06
Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 42 GGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILI 101
GG G + + L + +P +L +K V I + GV V A Y D +L
Sbjct: 378 GGNGRLVQALAENVP----------ILYEKTVQTIRY-GSNGVKVI-AGNQVYEGDMVLC 425
Query: 102 TVSLGVLKSNLITFVPPLPPKKLTAIE 128
TV LGVLK+ I FVP LP +KL I+
Sbjct: 426 TVPLGVLKNGSIKFVPELPQRKLDCIK 452
>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1.
Length = 738
Score = 42.6 bits (100), Expect = 2e-05
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 71 KEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
K V I + + GV V A + AD +L TV LGVLK I F P LP +KL AI+
Sbjct: 373 KTVDTIKYGN-DGVEVI-AGSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAID 428
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 42.7 bits (100), Expect = 2e-05
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 83 GVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
GV+V A G ++ D +L TV LGVLK I F P LP +K AI+
Sbjct: 464 GVIVY-AGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQ 508
>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
Length = 451
Score = 32.5 bits (75), Expect = 0.056
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 41 KGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRIL 100
KGG ++ + L +++P T + VTKI+ + G + ++G + AD ++
Sbjct: 217 KGGLQSLIEALEEKLPAGT-------IHKGTPVTKID-KSGDGYEIVLSNGGEIEADAVI 268
Query: 101 ITVSLGVLKS 110
+ V VL S
Sbjct: 269 VAVPHPVLPS 278
>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA
[Cell cycle control, cell division, chromosome
partitioning].
Length = 621
Score = 31.7 bits (73), Expect = 0.10
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 48 FKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVV-VTCADGTQYSADRILITV 103
++ MK P +L LL+ EV + E+ + VV V ADG ++ A +++T
Sbjct: 102 YRRAMKNELENQP-NLH---LLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTT 154
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this family,
including sll0033 (crtH) of Synechocystis sp. PCC 6803,
catalyze a cis-trans isomerization of carotenes to the
all-trans lycopene, a reaction that can also occur
non-enzymatically in light through photoisomerization
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 493
Score = 31.7 bits (72), Expect = 0.11
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 36 GVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYS 95
G+ + KGG G + + L+K + ++ + VTKI E+ K V V ADG +
Sbjct: 220 GINYPKGGVGQIAESLVKGLE-----KHGGQIRYRARVTKIILENGKAVGVKLADGEKIY 274
Query: 96 ADRIL 100
A RI+
Sbjct: 275 AKRIV 279
>gnl|CDD|236887 PRK11259, solA, N-methyltryptophan oxidase; Provisional.
Length = 376
Score = 29.8 bits (68), Expect = 0.48
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 67 LLLKKEVTKINWE-DPKGVVVTCADGTQYSADRILIT 102
LL + VT E D GV VT ADGT Y A +++++
Sbjct: 166 LLFNEPVT--AIEADGDGVTVTTADGT-YEAKKLVVS 199
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 29.7 bits (68), Expect = 0.56
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 66 KLLLKKEVTKIN----WEDPKGVVVTCADGTQYSADRILITV 103
L V I + D V V +G +Y+AD ILI
Sbjct: 101 NGLENNGVDLIEGFARFVDAHTVEV---NGERYTADHILIAT 139
>gnl|CDD|172541 PRK14049, PRK14049, ferrioxamine B receptor precursor protein;
Provisional.
Length = 726
Score = 28.7 bits (64), Expect = 1.4
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 7 NQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPI 61
N S + F+T GL+ + L G ++ G G +F L+ K+ P + P+
Sbjct: 139 NLRQPGASSSIFKTEPYGLEGVSILRGPSSALYGASGAGGLFNLITKR-PTEEPL 192
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 28.6 bits (64), Expect = 1.4
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 72 EVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPL 119
EV++I E KGV V +DG AD ++ SN +
Sbjct: 246 EVSQILVEGGKGVGVRTSDGENIEADAVV---------SNADPALLAR 284
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 28.2 bits (64), Expect = 1.4
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 62 DLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRIL 100
D + +EV K+ GV+V G + AD +L
Sbjct: 228 DSGVTIRHNEEVEKVE-GGDDGVIVHLKSGKKIKADCLL 265
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 28.3 bits (64), Expect = 1.5
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 17/92 (18%)
Query: 25 LDSFT--DLEGCF---GVVWKKGGYGNVFKLLMKQMPGQTPID--LSK------KLLLKK 71
L FT D G+ K+ G +F K +D L + + +
Sbjct: 76 LARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDK---ASPIVDALLKELEALGVTIRTRS 132
Query: 72 EVTKINWEDPKGVVVTCADGTQYSADRILITV 103
V+ + +D G + + G D +++
Sbjct: 133 RVSSVE-KDDSGFRLDTSSGETVKCDSLILAT 163
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 28.3 bits (64), Expect = 1.7
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILIT 102
K+ + V + +D V G + AD +++
Sbjct: 124 KIRTRTRVLSVEKDDDGRFRVDTDGGEELEADSLVLA 160
>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted to
lycopene by desaturation at four (two symmetrical pairs
of) sites. This is achieved by two enzymes (crtP and
crtQ) in cyanobacteria (Gloeobacter being an exception)
and plants, but by a single enzyme in most other
bacteria and in fungi. This single enzyme is called the
bacterial-type phytoene desaturase, or CrtI. Most
members of this family, part of the larger Pfam family
pfam01593, which also contains amino oxidases, are CrtI
itself; it is likely that all members act on either
phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 502
Score = 28.0 bits (63), Expect = 1.9
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 20 TSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWE 79
S L S + E +GV + +GG G + + K DL +L L EV +I E
Sbjct: 196 PSIYALISALERE--WGVWFPRGGTGALVAAMAKLAE-----DLGGELRLNAEVIRIETE 248
Query: 80 DPKGVVVTCADGTQYSAD 97
+ V ADG + AD
Sbjct: 249 GGRATAVHLADGERLDAD 266
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 27.9 bits (63), Expect = 2.1
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 67 LLLKKEVTKINWEDPKGVVVTCADGTQYSADRILIT 102
+ L EVT ++ E GVVV G Y A LI
Sbjct: 166 IRLGAEVTALD-EHANGVVVRTTQGE-YEART-LIN 198
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 27.7 bits (62), Expect = 2.2
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILI 101
++LL EV I+ + V+ G + + D+++I
Sbjct: 72 EVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLII 107
>gnl|CDD|132490 TIGR03449, mycothiol_MshA, D-inositol-3-phosphate
glycosyltransferase. Members of this protein family,
found exclusively in the Actinobacteria, are MshA, the
glycosyltransferase of mycothiol biosynthesis. Mycothiol
replaces glutathione in these species.
Length = 405
Score = 27.8 bits (62), Expect = 2.4
Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 99 ILITVSLGVLKSNLITFVPPLPPKKLTAI 127
I + LG+ ++ + F+PP PP++L +
Sbjct: 273 IELAAELGI--ADRVRFLPPRPPEELVHV 299
>gnl|CDD|241144 cd12700, RRM3_hnRPLL, RNA recognition motif 3 in vertebrate
heterogeneous nuclear ribonucleoprotein L-like
(hnRNP-LL). The subgroup corresponds to the RRM3 of
hnRNP-LL which plays a critical and unique role in the
signal-induced regulation of CD45 and acts as a global
regulator of alternative splicing in activated T cells.
It is closely related in domain structure and sequence
to heterogeneous nuclear ribonucleoprotein L (hnRNP-L),
which is an abundant nuclear, multifunctional
RNA-binding protein with three RNA-recognition motifs
(RRMs), also known as RBD (RNA binding domain) or RNP
(ribonucleoprotein domain). .
Length = 71
Score = 26.1 bits (57), Expect = 2.7
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 44 YGNVFKL-LMKQMPGQTPIDLSKKLLLKKEVTKIN 77
YGN+ K+ MK +PG +++ + +++ VT +N
Sbjct: 24 YGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLN 58
>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding.
Length = 153
Score = 26.8 bits (60), Expect = 3.3
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 72 EVTKINWEDPKGVVVTCADGTQYSADRILITV 103
EV + G VT ADG AD +++
Sbjct: 120 EVVDLR-PRGGGYTVTLADGATLRADAVVLAT 150
>gnl|CDD|238600 cd01195, INT_Tn544B_C, Tn544B and related transposases, DNA
breaking-rejoining enzymes, integrase/recombinases,
catalytic domain. This CD includes various bacterial
transposases similar to TnpB from transposon Tn554.
Length = 195
Score = 27.2 bits (60), Expect = 3.3
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 18 FETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKL--LLKKEVTK 75
ET R D T + C + ++ + K + I +SKK+ L+K K
Sbjct: 30 QETGMRISDLLTLKKNCLLEDKDGDFFYKYYQCIWKTKIKEHIIPISKKVALLIKVREDK 89
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase
inhibitor.
Length = 541
Score = 26.8 bits (59), Expect = 4.5
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 14/47 (29%)
Query: 80 DPKGVVVTCADGT--------------QYSADRILITVSLGVLKSNL 112
DP V+V ADGT S DRI+I V GV + N+
Sbjct: 227 DPSEVLVVAADGTGNFSTITDAINFAPNNSNDRIIIYVREGVYEENV 273
>gnl|CDD|215392 PLN02737, PLN02737, inositol monophosphatase family protein.
Length = 363
Score = 26.7 bits (59), Expect = 4.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 83 GVVVTCADGTQYSA-DRILITVSLGVLKSNLITFVPP 118
G VT DG ++S DR ++ VS GVL L+ + P
Sbjct: 303 GGTVTRMDGGKFSVFDRSVL-VSNGVLHPKLLDRIGP 338
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 26.7 bits (59), Expect = 5.1
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQ-YSADRILITV 103
++L+ VT++ D + DGT+ D +++ +
Sbjct: 119 TVVLETRVTEVARTD-NDWTLHTDDGTRHTQFDDVVLAI 156
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 26.8 bits (60), Expect = 5.3
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 73 VTKINWEDPKGVVVTCADGTQYSAD 97
VT I +D GV VT +DGT D
Sbjct: 130 VTAIE-QDDDGVTVTFSDGTTGRYD 153
>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A.
Length = 391
Score = 26.4 bits (59), Expect = 6.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 68 LLKKEVTKINWEDPKGVVVTCADGTQYSADRILIT 102
L++ EVT + E+ K V DG +Y A +++
Sbjct: 113 LIQGEVTDLIPENGKVKGVVTEDGEEYKAKAVVLA 147
>gnl|CDD|132869 cd07231, Pat_SDP1-like, Sugar-Dependent 1 like lipase.
Sugar-Dependent 1 (SDP1) lipase has a patatin-like
acyl-hydrolase domain that initiates the breakdown of
storage oil in germinating Arabidopsis seeds. This
acyl-hydrolase domain is homologus to yeast
triacylglycerol lipase 3 and human adipose triglyceride
lipase. This family includes SDP1 from Arabidopsis
thaliana.
Length = 323
Score = 26.3 bits (58), Expect = 7.3
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 84 VVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQ 142
V +CA + A ++ K VP PP K+++ S++QD Q
Sbjct: 175 VAASCAFPGLFEAQELMA-------KDRFGEIVPYHPPGKVSSPRRWRDGSLEQDLPMQ 226
>gnl|CDD|220518 pfam10008, DUF2251, Uncharacterized protein conserved in bacteria
(DUF2251). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 97
Score = 25.5 bits (56), Expect = 7.4
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 25 LDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPID 62
++S + G VV++ G F L + GQ +D
Sbjct: 2 VESHSTKHGHLAVVFEDDGETGYFYALDMRQEGQPIVD 39
>gnl|CDD|236054 PRK07573, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 640
Score = 25.9 bits (58), Expect = 8.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 37 VVWKKGGYGNVFKL 50
VV GGYGNVF L
Sbjct: 224 VVLATGGYGNVFYL 237
>gnl|CDD|234812 PRK00694, PRK00694, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Validated.
Length = 606
Score = 26.0 bits (57), Expect = 9.9
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 44 YGNVFKLLMKQMPGQ----TPIDLSKKLLLKKEVTKINWEDPKGVVV 86
+GNV+ + +K P +L + L + K ++ P+GVVV
Sbjct: 325 WGNVYGVFIKLTDVHLLTAEPEELLECLGIDPTTGKKDFTTPEGVVV 371
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.407
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,313,054
Number of extensions: 642149
Number of successful extensions: 608
Number of sequences better than 10.0: 1
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 46
Length of query: 147
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 59
Effective length of database: 7,034,450
Effective search space: 415032550
Effective search space used: 415032550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)