RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13542
(147 letters)
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 116 bits (291), Expect = 1e-31
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 1 MDYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTP 60
+DY + + + L +F+D V + GY V L Q
Sbjct: 162 VDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDD 221
Query: 61 I---DLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVP 117
+ +L L K V +I + P GV V D + YSAD ++++ SLGVL+S+LI F P
Sbjct: 222 KSGKIVDPRLQLNKVVREIKY-SPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKP 280
Query: 118 PLPPKKLTAIE 128
LP K+ AI
Sbjct: 281 KLPTWKVRAIY 291
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 99.1 bits (246), Expect = 3e-25
Identities = 36/123 (29%), Positives = 48/123 (39%), Gaps = 16/123 (13%)
Query: 15 ENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVT 74
E W + L + G G Y +V + + + P L L EV
Sbjct: 172 ELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSFPQN-------WLKLSCEVK 224
Query: 75 KINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNL---------ITFVPPLPPKKLT 125
I E K V V C DGT Y+AD ++ITV VL ++ I F PPL P
Sbjct: 225 SITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQD 284
Query: 126 AIE 128
A +
Sbjct: 285 AFD 287
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 94.9 bits (236), Expect = 7e-24
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 11/112 (9%)
Query: 17 WFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKI 76
W+ G GG G V + +M + ++ L++ V I
Sbjct: 187 WYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGD--------RVKLERPVIYI 238
Query: 77 NWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
+ + V+V + Y A ++ + + I F PPLP + I
Sbjct: 239 DQ-TRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMIT 287
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 91.5 bits (227), Expect = 1e-22
Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 22 ARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDP 81
A ++ C K G + ++ G + + V + +
Sbjct: 232 AMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAAGTGRLGY----VFGCPVRSVVN-ER 286
Query: 82 KGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
VT DG ++ A R++ T+ L VL + I F P L ++++A++
Sbjct: 287 DAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQ 331
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 90.6 bits (225), Expect = 2e-22
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 12/115 (10%)
Query: 14 SENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEV 73
SA D E GG V + + + + L V
Sbjct: 185 QAVLMAASAGSFSHLVD-EDFILDKRVIGGMQQVSIRMAEALGD--------DVFLNAPV 235
Query: 74 TKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
+ W + G V + A R+++ V + I++ PPLP ++ +
Sbjct: 236 RTVKW-NESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQ 287
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 89.9 bits (222), Expect = 5e-22
Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 17/126 (13%)
Query: 10 TYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLL 69
+ + S + D D E + + GY V L + + + L
Sbjct: 366 EFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLD----------IKL 415
Query: 70 KKEVTKINWEDPKGVVVT-----CADGTQYSADRILITVSLGVLKSN--LITFVPPLPPK 122
V ++ + V+ + Y D +L T+ LGVLK + FVPPLP
Sbjct: 416 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 475
Query: 123 KLTAIE 128
K +A++
Sbjct: 476 KTSAVQ 481
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 88.5 bits (218), Expect = 2e-21
Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 17/125 (13%)
Query: 11 YDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLK 70
+ + S + D D E + + GY V L + + + L
Sbjct: 538 FANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLD----------IKLN 587
Query: 71 KEVTKINWEDPKGVVVT-----CADGTQYSADRILITVSLGVLKSN--LITFVPPLPPKK 123
V ++ + V+ + Y D +L T+ LGVLK + FVPPLP K
Sbjct: 588 TAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWK 647
Query: 124 LTAIE 128
+A++
Sbjct: 648 TSAVQ 652
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 86.0 bits (213), Expect = 9e-21
Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 13/105 (12%)
Query: 25 LDSFTDLEGCFGVVWK-KGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG 83
++ L + G ++ + +++P ++ L+ VT I+
Sbjct: 186 AHHYSILGVVLSLDEVFSNGSADLVDAMSQEIP---------EIRLQTVVTGIDQ-SGDV 235
Query: 84 VVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
V VT DG + A +++ + + I F P LP ++ + IE
Sbjct: 236 VNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSVIE 278
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 71.1 bits (174), Expect = 2e-15
Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 18/131 (13%)
Query: 2 DYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPI 61
D +G N G F S + D F + +V G + + + +
Sbjct: 201 DMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIV---DGMDKLPTAMYRDIQD---- 253
Query: 62 DLSKKLLLKKEVTKINWEDPKGVVVTC----ADGTQYSADRILITVSLGVLKSNLITFVP 117
K+ +V KI + + V V + +AD +++ + ++ I F P
Sbjct: 254 ----KVHFNAQVIKIQQ-NDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRL--IKFNP 306
Query: 118 PLPPKKLTAIE 128
PL PKK A+
Sbjct: 307 PLLPKKAHALR 317
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 62.2 bits (151), Expect = 2e-12
Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 15/127 (11%)
Query: 5 GKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLS 64
G + + E R + + GG ++ ++ +
Sbjct: 199 GTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMMFTPVGGMDRIYYAFQDRIG-------T 251
Query: 65 KKLLLKKEVTKINWEDPKGVVVTCADG---TQYSADRILITVSLGVLKSNLITFVPPLPP 121
++ EVT + +GV V G +AD + T+ ++ LP
Sbjct: 252 DNIVFGAEVTSMKN-VSEGVTVEYTAGGSKKSITADYAICTIPPHLVG----RLQNNLPG 306
Query: 122 KKLTAIE 128
LTA++
Sbjct: 307 DVLTALK 313
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 130
Score = 44.6 bits (105), Expect = 8e-07
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 89 ADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
A ++ D ++T+ L+ + PP KK A+
Sbjct: 1 AATQTWTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAVI 38
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 36.5 bits (83), Expect = 0.001
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 13/106 (12%)
Query: 2 DYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPI 61
+ +G +N F S G + + GG + + L K
Sbjct: 280 EAIGTIENMTSRLHLAFFHSFLGRSDIDPRATYWEIE---GGSRMLPETLAKD------- 329
Query: 62 DLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILI-TVSLG 106
L ++++ + + ++ + DP G + T + I TV G
Sbjct: 330 -LRDQIVMGQRMVRLEYYDP-GRDGHHGELTGPGGPAVAIQTVPEG 373
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 36.4 bits (84), Expect = 0.002
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 14/87 (16%)
Query: 24 GLDSFTDLEGCFGVVWKKG-GYGNVFKLLMKQMPGQTPIDLSKKL-------LLKKEVTK 75
D G G + G G+ + L+ ++++ + V
Sbjct: 136 EGVLQGDFPGWKGYFARSGAGWAHARNALVAA------AREAQRMGVKFVTGTPQGRVVT 189
Query: 76 INWEDPKGVVVTCADGTQYSADRILIT 102
+ +E+ ADG + A+R +
Sbjct: 190 LIFENNDVKGAVTADGKIWRAERTFLC 216
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 35.8 bits (83), Expect = 0.002
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILI 101
+ K + ++ +D + V + +DGT+ A+ +I
Sbjct: 113 RYHTSKCLVGLS-QDSETVQMRFSDGTKAEAN-WVI 146
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 34.9 bits (81), Expect = 0.005
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 69 LKKEVTKINWEDPKGVVVTCADGTQYSADRILI 101
K VT+ ED GV V DG+ S D +LI
Sbjct: 144 FGKRVTRCE-EDADGVTVWFTDGSSASGD-LLI 174
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.008
Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 47/152 (30%)
Query: 3 YVGKNQNTYDGSENWFETSARGL----DSFTDLEGCFG-------------VVWKKGGY- 44
G + Y S+ +A+ + D+ + +G + GG
Sbjct: 1628 EQGMGMDLYKTSK-----AAQDVWNRADNH--FKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 45 GNVFKLLMKQMPGQTPID---LSKKLL--LKKEVTKINWEDPKGVVVTCADGTQYS--AD 97
G + M +T +D ++K+ + + T + KG++ TQ++ A
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL----SATQFTQPA- 1735
Query: 98 RILITVSLG---VLKSNLITFVPPLPPKKLTA 126
L + LKS + +P A
Sbjct: 1736 --LTLMEKAAFEDLKSKGL-----IPADATFA 1760
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 34.6 bits (80), Expect = 0.008
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLT 125
K+L +KEV +IN E+ K V D +YS D + V + + L
Sbjct: 205 KILTRKEVVEINIEEKK---VYTRDNEEYSFDVAISNVGVRETVKLIGR--DYFDRDYLK 259
Query: 126 AIE 128
++
Sbjct: 260 QVD 262
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 33.7 bits (77), Expect = 0.014
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 19/98 (19%)
Query: 13 GSENWFETSAR------GLDSFTDLEGCFGVVWK-KGGYGNVFKLLMKQMPGQTPIDLSK 65
G ++ A + G +W G +F+ L L
Sbjct: 169 GYGHFDNVPAAYVLKYLDFVTMMSFAK--GDLWTWADGTQAMFEHLNAT--------LEH 218
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV 103
++T+I ED V + D + +D +++TV
Sbjct: 219 PAERNVDITRITRED-GKVHIHTTDWDR-ESDVLVLTV 254
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 32.8 bits (75), Expect = 0.034
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 67 LLLKKEVTKINWEDPKGVVVTCADGTQYSADRILIT 102
+L K+V ++ D + +V DG+Q + ++ LI
Sbjct: 107 VLTGKKVVQL---DVRDNMVKLNDGSQITYEKCLIA 139
Score = 28.9 bits (65), Expect = 0.58
Identities = 7/42 (16%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGV 107
K++ V + +++ DG + D I+ ++G+
Sbjct: 242 KVMPNAIVQSVGVSS-GKLLIKLKDGRKVETDHIV--AAVGL 280
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 32.3 bits (74), Expect = 0.038
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 28 FTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVT 87
++ G +GG + L + K+ +EV+KI E+ K +
Sbjct: 179 IENMYRFGGTGIPEGGCKGIIDALETVI-----SANGGKIHTGQEVSKILIENGKAAGII 233
Query: 88 CADGTQYSADRI 99
AD + AD +
Sbjct: 234 -ADDRIHDADLV 244
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 32.2 bits (74), Expect = 0.051
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 67 LLLKKEVTKINWEDPKGVVVTCADGTQYSADRILIT 102
LL +VT I + V +DG DR+++
Sbjct: 77 LLGGTQVTAI---NRDRQQVILSDGRALDYDRLVLA 109
Score = 27.6 bits (62), Expect = 1.5
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 67 LLLKKEVTKINWEDPKGVV--VTCADGTQYSADRILITVSLGVL 108
+ +V + V V C DGT+ AD ++ +G++
Sbjct: 208 IRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVI--AGIGLI 249
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 31.7 bits (73), Expect = 0.070
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 65 KKLLLKKEVTKIN----WEDPKGVVVTCADGTQYSADRILITV 103
+ L K + I + + G +Y+A ILI
Sbjct: 115 QNNLTKSHIEIIRGHAAFTSDPKPTIE-VSGKKYTAPHILIAT 156
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 31.7 bits (73), Expect = 0.076
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILIT 102
K+ V I +E+ + V G + ++I
Sbjct: 150 KIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIA 186
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 31.4 bits (72), Expect = 0.085
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 67 LLLKKEVTKINWEDPKGVVVTCADGTQYSADRILIT 102
+ L EV + DP V DG+ +++
Sbjct: 82 MKLGAEVVSL---DPAAHTVKLGDGSAIEYGKLIWA 114
Score = 29.1 bits (66), Expect = 0.55
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 67 LLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVL 108
L + I + K V DG+ AD ++ V +G++
Sbjct: 211 LRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVI--VGIGIV 250
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 31.3 bits (72), Expect = 0.087
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 65 KKLLLKKEVTKIN----WEDPKGVVVTCADGTQYSADRILITV 103
+K L ++ P V + A G +A+RI+I V
Sbjct: 100 RKGLANAGAEILDTRAELAGPNTVKLL-ASGKTVTAERIVIAV 141
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 31.4 bits (72), Expect = 0.092
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 68 LLKKEVTKINWEDPKGVVVTCADGTQYSADRILIT 102
L+ + I D +G + A GT +++
Sbjct: 74 LISDRMVSI---DREGRKLLLASGTAIEYGHLVLA 105
Score = 28.3 bits (64), Expect = 0.81
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 67 LLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVL 108
+ T+I E + V +DG D ++ V +GV+
Sbjct: 201 MHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVV--VGVGVI 240
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 31.4 bits (72), Expect = 0.095
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 67 LLLKKEVTKINWEDPKGVVVTCADGTQYSADRILIT 102
LL DP+ V +DG +++
Sbjct: 76 WLLGVTAQSF---DPQAHTVALSDGRTLPYGTLVLA 108
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 31.0 bits (71), Expect = 0.10
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILI-TVSLGVLKSNLITFVPPLP 120
K++ + T I DP +VT G + ++++I + S+ +P
Sbjct: 78 KVITSEFATSI---DPNNKLVTLKSGEKIKYEKLIIASGSI--------ANKIKVP 122
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 31.0 bits (71), Expect = 0.10
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 67 LLLKKEVTKINWEDPKGVVVTCADGTQYSADRILIT 102
+L EVT + D + ++ DGT SAD I+I
Sbjct: 74 MLTGPEVTAL---DVQTRTISLDDGTTLSADAIVIA 106
Score = 28.3 bits (64), Expect = 0.98
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 67 LLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGV 107
+ L V + + + V +DG + AD L + +G
Sbjct: 202 VELGTGVVGFS-GEGQLEQVMASDGRSFVADSAL--ICVGA 239
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 31.0 bits (71), Expect = 0.11
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 65 KKLLLKKEVTKIN----WEDPKGVVVTCADGTQ-YSADRILITV 103
+ L K+V IN + D ++ G + +A +I V
Sbjct: 115 RVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAV 158
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 30.9 bits (70), Expect = 0.12
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 11/49 (22%)
Query: 62 DLSKKLL---------LKKEVTKINWEDPKGVVVTCADGTQYSADRILI 101
DL LL +++ + K +T + +AD ++I
Sbjct: 129 DLRAILLNSLENDTVIWDRKLVMLE-PGKKKWTLTFENKPSETAD-LVI 175
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 31.0 bits (71), Expect = 0.13
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV 103
+L + GV+VT DG L+T+
Sbjct: 239 RLFKNARAASVT-RTGAGVLVTMTDGRTVEGSHALMTI 275
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 30.6 bits (70), Expect = 0.17
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 65 KKLLLKKEVTKIN----WEDPKGVVVTCADGTQYSADRILITV 103
++ L V + D + ++ G + SA++ILI
Sbjct: 121 REGLQNSNVHIYESRAVFVDEHTLELS-VTGERISAEKILIAT 162
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle
structural genomics center for infectious disease, S
tuberculosis; 1.82A {Mycobacterium smegmatis str}
Length = 381
Score = 30.3 bits (69), Expect = 0.20
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 24/71 (33%)
Query: 37 VVWKKG----GYGNVFKLLMKQMPGQTPIDLSK----------KLLLKKEVTKINWEDP- 81
+ G N +P P S+ LLL + ++ D
Sbjct: 317 TIVHHGVTITSPLN--------LPATMPEHASELYAKNVTALLDLLLTDDGVAPDFTDEI 368
Query: 82 -KGVVVTCADG 91
+T +G
Sbjct: 369 VAASCITRTEG 379
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 30.2 bits (69), Expect = 0.21
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 65 KKLLLKKEVTKIN----WEDPKGVVVTCADG--TQYSADRILITV 103
+K L K++V + + V V D YSA+ IL+
Sbjct: 112 QKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVAT 156
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 30.2 bits (69), Expect = 0.21
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 65 KKLLLKKEVTKIN----WEDPKGVVVTCADG--TQYSADRILITV 103
+ L ++V N + D V G T SA+ I+I
Sbjct: 111 RVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIAT 155
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 30.2 bits (69), Expect = 0.23
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 65 KKLLLKKEVTKIN----WEDPKGVVVTCADGTQYSADRILITV 103
+ +L K V I + D K + V +G +AD ILI
Sbjct: 100 ENVLGKNNVDVIKGFARFVDAKTLEV---NGETITADHILIAT 139
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 29.8 bits (68), Expect = 0.26
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 65 KKLLLKKEVTKIN----WEDPKGVVVTCADGTQYSADRILITV 103
+ + +T+++ + D + V +G + SAD I+I
Sbjct: 99 DGYVERLGITRVDGHARFVDAHTIEV---EGQRLSADHIVIAT 138
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 29.8 bits (68), Expect = 0.28
Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 14/76 (18%)
Query: 41 KGGYGNVFKLLMKQMPGQ---TPIDLSKKL-----------LLKKEVTKINWEDPKGVVV 86
N + P + + +K V I + +
Sbjct: 37 NNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGLFEI 96
Query: 87 TCADGTQYSADRILIT 102
D T+Y A+R+L+
Sbjct: 97 VTKDHTKYLAERVLLA 112
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 29.5 bits (67), Expect = 0.38
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV 103
+ L + + + +G+ +DG D ++ V
Sbjct: 203 RFHLGPVLASLK-KAGEGLEAHLSDGEVIPCDLVVSAV 239
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 29.5 bits (67), Expect = 0.43
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 65 KKLLLKKEVTKIN----WEDPKGVVVTCADG--TQYSADRILITV 103
+ L +K+V N + P + T G YSA+R LI
Sbjct: 137 RVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIAT 181
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 29.2 bits (66), Expect = 0.44
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILI 101
+ + E DP G + T G AD +++
Sbjct: 123 DISVNSEAVAA---DPVGRL-TLQTGEVLEAD-LIV 153
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 29.4 bits (67), Expect = 0.45
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGV 107
+ ++V ++ + V D AD L+ ++ GV
Sbjct: 218 VVHTGEKVVRLE-GENGKVARVITDKRTLDAD--LVILAAGV 256
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.46
Identities = 15/141 (10%), Positives = 37/141 (26%), Gaps = 49/141 (34%)
Query: 35 FGVVWKKGGYGNVFKLLMKQM---------PGQTPIDLSKKLLLKKEVTKIN-------- 77
F + W N + +++ + + D S + L+ +
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 78 ------------WEDPKGVV----VTCADGTQYSADRILITVSLGVLKSNLITFVPPLPP 121
+ K ++C +IL+T + F+
Sbjct: 242 PYENCLLVLLNVQ-NAK-AWNAFNLSC---------KILLTTR----FKQVTDFLSAATT 286
Query: 122 KKLTAIELT-NLTSIQQDTLF 141
++ + LT + +L
Sbjct: 287 THISLDHHSMTLTPDEVKSLL 307
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 29.0 bits (66), Expect = 0.54
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGV 107
L+L +V E ++ DG + +D + + +G
Sbjct: 207 NLVLGSKVAAFE-EVDDEIITKTLDGKEIKSD--IAILCIGF 245
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 28.0 bits (63), Expect = 1.0
Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 22/84 (26%)
Query: 56 PGQTPIDLSKKLL-----------LKKEVTKINWEDPKGVVVTCADGTQYSADRILITVS 104
P IDL + L L + VTK D G Y + +LI
Sbjct: 69 PEVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAG 128
Query: 105 LGVLKSNLITFVPPLPPKKLTAIE 128
LG + P+KL +
Sbjct: 129 LGAFE-----------PRKLPQLG 141
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 28.1 bits (63), Expect = 1.1
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 65 KKLLLKKEVTKIN----WEDPKGVVVTCADG--TQYSADRILITV 103
K L +VT +N P V +T + + + ++I++
Sbjct: 213 KVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILAT 257
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 27.9 bits (63), Expect = 1.3
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 23/92 (25%)
Query: 56 PGQTPI---DLSKKLL-----------LKKEVTKINWEDPKGVVVTCADGTQYSADRILI 101
G + DL K L+ L + + E VT + G Y+A ++I
Sbjct: 57 AGFPKVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREG-DLFKVTTSQGNAYTAKAVII 115
Query: 102 TVSLGVLKSNLITFVP-PLPPKKLTAIELTNL 132
+G F P + E +
Sbjct: 116 AAGVG-------AFEPRRIGAPGEREFEGRGV 140
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 27.9 bits (63), Expect = 1.3
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 12/57 (21%)
Query: 56 PGQTPIDLSKKL-----------LLKKEVTKINWEDPKGVVVTCADGTQYSADRILI 101
G+ P ++ + ++ VT +V G + +A R+++
Sbjct: 51 DGKAPGEIIAEARRQIERYPTIHWVEGRVTDAKGSFG-EFIVEIDGGRRETAGRLIL 106
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 27.6 bits (62), Expect = 1.5
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGV 107
+L+ + V + + G VV G+ D ++ +++GV
Sbjct: 244 ELVFEDGVDAL---EENGAVVRLKSGSVIQTD--MLILAIGV 280
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 27.5 bits (62), Expect = 1.8
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV 103
++L + +++ D V+T G AD++L+
Sbjct: 232 EVLEHTQASQVAHMD-GEFVLTTTHGEL-RADKLLVAT 267
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 27.1 bits (61), Expect = 2.2
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV 103
+ VT + + KG V G ADR+L+ V
Sbjct: 224 TIRTGVRVTAVV-PEAKGARVELEGGEVLEADRVLVAV 260
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 27.0 bits (60), Expect = 2.6
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 68 LLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGV 107
++ T I DP +V A G ++ DR + V+ G+
Sbjct: 72 VVHDSATGI---DPDKKLVKTAGGAEFGYDR-CV-VAPGI 106
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 27.0 bits (60), Expect = 2.8
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 68 LLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGV 107
+ ++ I DP VT G + D L+ ++ G
Sbjct: 73 FINEKAESI---DPDANTVTTQSGKKIEYD-YLV-IATGP 107
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 26.5 bits (59), Expect = 3.1
Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 108 LKSNLITFVPPLPPKKLTAIELTN--LTSIQQDTL 140
+ +T +P P+ L + L + + +I+ + L
Sbjct: 179 ISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDL 213
Score = 25.7 bits (57), Expect = 6.0
Identities = 5/39 (12%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 108 LKSNLITFVPPLPPKKLTAIELTN--LTSIQQDTLFQIP 144
+ N + +PP P L + + + + + + +
Sbjct: 109 ISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLR 147
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 146
Score = 26.3 bits (58), Expect = 3.1
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 108 LKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLF 141
L+ + VPPLP K L + F
Sbjct: 63 LERDSKIVVPPLPGKALKRQLPFRGDEGIFEESF 96
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 26.1 bits (58), Expect = 4.2
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 108 LKSNLITFVPPLPPKKLTAIELTN--LTSIQQDTL 140
+ IT +P P LT + L +T + +L
Sbjct: 178 IADTNITTIPQGLPPSLTELHLDGNKITKVDAASL 212
Score = 25.3 bits (56), Expect = 9.6
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 108 LKSNLITFVPPLPPKKLTAIELTN--LTSIQQDTLFQIP 144
L N + +P PK L + + +T +++ +
Sbjct: 107 LSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN 145
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 26.0 bits (58), Expect = 5.0
Identities = 5/38 (13%), Positives = 15/38 (39%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV 103
+++ + K++ VT G D +++ +
Sbjct: 251 EIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAI 288
Score = 25.6 bits (57), Expect = 8.4
Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 10/47 (21%)
Query: 67 LLLKKEVTKIN----WEDPKGVVVTC------ADGTQYSADRILITV 103
+ + E VVV A + AD IL+
Sbjct: 117 FNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLAT 163
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 5.4
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 104 SLGVLKSNLITFVPPLPPKKLTAIELT 130
+L L+++L + P L AI+ T
Sbjct: 21 ALKKLQASLKLYADDSAP-AL-AIKAT 45
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 25.5 bits (56), Expect = 8.2
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 68 LLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLG 106
+ + +I D + +T ADG D L+ ++ G
Sbjct: 76 FIAQSAEQI---DAEAQNITLADGNTVHYD-YLM-IATG 109
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully
methylated CG, SUVH5, 5MC binding protein, fully
methylated CG duplex DNA; HET: DNA 5CM; 2.20A
{Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X*
Length = 167
Score = 25.1 bits (54), Expect = 8.3
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 32 EGCFGVV---WKKGGYG-NVFKLLMKQMPGQTPIDLSK 65
+G + V + G +G VFK ++++PGQ + +
Sbjct: 128 DGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPELPWKE 165
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase;
1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Length = 154
Score = 24.9 bits (54), Expect = 9.9
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 108 LKSNLITFVPPLPPKKLT 125
LK +P K++
Sbjct: 55 LKKQFPAMALKIPAKRIF 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.407
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,231,991
Number of extensions: 123568
Number of successful extensions: 465
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 81
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.0 bits)