RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13542
(147 letters)
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 56.7 bits (135), Expect = 7e-11
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 39 WKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADR 98
GG F Q+ + L ++ L++ V I+ + V+V + Y A
Sbjct: 196 TTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTR-ENVLVETLNHEMYEAKY 254
Query: 99 ILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
++ + + I F PPLP + I
Sbjct: 255 VISAIPPTLGMK--IHFNPPLPMMRNQMIT 282
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 55.0 bits (130), Expect = 2e-10
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 75 KINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
+ P GV V D + YSAD ++++ SLGVL+S+LI F P LP K+ AI
Sbjct: 234 REIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIY 287
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 52.8 bits (125), Expect = 2e-09
Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 11 YDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLK 70
+ ++ + L G + + + + +
Sbjct: 204 LNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKV--------HFN 255
Query: 71 KEVTKINWEDPKGVVVT---CADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAI 127
+V KI D K VV + +AD +++ + ++ LI F PPL PKK A+
Sbjct: 256 AQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVR--LIKFNPPLLPKKAHAL 313
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 37.8 bits (86), Expect = 2e-04
Identities = 11/87 (12%), Positives = 22/87 (25%), Gaps = 10/87 (11%)
Query: 36 GVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGT--Q 93
+ GG + L L + V + ED ++ G +
Sbjct: 213 ALSTFDGGLQVLIDALAAS--------LGDAAHVGARVEGLAREDGGWRLIIEEHGRRAE 264
Query: 94 YSADRILITVSLGVLKSNLITFVPPLP 120
S ++++ L L
Sbjct: 265 LSVAQVVLAAPAHATAKLLRPLDDALA 291
>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma
cruzi [TaxId: 5693]}
Length = 117
Score = 33.2 bits (75), Expect = 0.004
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV 103
++L K+ K+ VT G + D +++ +
Sbjct: 80 QILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI 117
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 33.6 bits (75), Expect = 0.005
Identities = 5/72 (6%), Positives = 20/72 (27%), Gaps = 6/72 (8%)
Query: 34 CFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG-VVVTCADGT 92
++ G G + + + +L + ++ ++ G
Sbjct: 225 KSPYLYPMYGLGELPQGFARLS-----AIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLG 279
Query: 93 QYSADRILITVS 104
+ A ++ +
Sbjct: 280 TFKAPLVIADPT 291
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli
[TaxId: 562]}
Length = 116
Score = 31.7 bits (71), Expect = 0.011
Identities = 4/38 (10%), Positives = 12/38 (31%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV 103
+L + + + DG + D ++ +
Sbjct: 78 QLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAI 115
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 137
Score = 32.1 bits (72), Expect = 0.012
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGV 107
K++ V + +++ DG + D I+ V G+
Sbjct: 99 KVMPNAIVQSVG-VSSGKLLIKLKDGRKVETDHIVAAV--GL 137
>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia
fasciculata [TaxId: 5656]}
Length = 117
Score = 30.9 bits (69), Expect = 0.019
Identities = 4/37 (10%), Positives = 12/37 (32%)
Query: 67 LLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV 103
+ + K+ V G + D +++ +
Sbjct: 79 VRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAI 115
>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas
putida [TaxId: 303]}
Length = 133
Score = 28.0 bits (61), Expect = 0.32
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 52 MKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVV--VTCADGTQYSADRILITV 103
+ + + +V + V V C DGT+ AD ++ +
Sbjct: 79 VSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGI 132
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase,
BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 121
Score = 26.6 bits (58), Expect = 0.82
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV 103
L ++ VT VV DGT+ +AD +++ +
Sbjct: 88 DLRFERSVTGS-----VDGVVLLDDGTRIAADMVVVGI 120
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis
[TaxId: 1351]}
Length = 123
Score = 26.0 bits (56), Expect = 1.2
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV 103
+ + V + + V D Y AD +++ V
Sbjct: 88 TIATGETVERYEGDG--RVQKVVTDKNAYDADLVVVAV 123
>d1v7wa2 b.30.5.3 (A:1-270) Chitobiose phosphorylase ChbP {Vibrio
proteolyticus [TaxId: 671]}
Length = 270
Score = 24.8 bits (54), Expect = 5.2
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 4/72 (5%)
Query: 67 LLLKKEVTKINWEDPKGVVVTCADGTQYSA----DRILITVSLGVLKSNLITFVPPLPPK 122
+ L+ + + W V D QY + + FVP
Sbjct: 71 VYLRDDDSGDYWSISWQPVAKSLDEAQYQIRHGLSYSKFQCDYNGIHARKTLFVPKGEDA 130
Query: 123 KLTAIELTNLTS 134
++ + + N +
Sbjct: 131 EIWDVVIKNTSD 142
>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 209
Score = 23.8 bits (51), Expect = 9.2
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 40 KKGGYG-NVFKLLMKQMPGQTPI------DLSKKLLLK 70
++G G V++ L+++ + D +++L L
Sbjct: 167 ERGKSGFLVWRYLLRRDDTEPEPWTREGKDRTRQLGLT 204
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.407
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 553,683
Number of extensions: 24565
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 17
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.0 bits)