BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13543
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRS---------LTTERLNTSAADLGAPVSNGQGKPV 149
+P+P + S W +P RGSYS + L + + + GAP Q P
Sbjct: 622 VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAP----QPIPR 677
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRI 179
L FAGE T + +TV+GA+ +G REA RI
Sbjct: 678 LFFAGEHTIRNYPATVHGALLSGLREAGRI 707
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRS---------LTTERLNTSAADLGAPVSNGQGKPV 149
+P+P + S W +P RGSYS + L + + + GAP Q P
Sbjct: 618 VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAP----QPIPR 673
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRI 179
L FAGE T + +TV+GA+ +G REA RI
Sbjct: 674 LFFAGEHTIRNYPATVHGALLSGLREAGRI 703
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRS---------LTTERLNTSAADLGAPVSNGQGKPV 149
+P+P + S W +P RGSYS + L + + + GAP Q P
Sbjct: 570 VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAP----QPIPR 625
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRI 179
L FAGE T + +TV+GA+ +G REA RI
Sbjct: 626 LFFAGEHTIRNYPATVHGALLSGLREAGRI 655
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRS---------LTTERLNTSAADLGAPVSNGQGKPV 149
+P+P + S W +P RGSYS + L + + + GAP Q P
Sbjct: 569 VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAP----QPIPR 624
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRI 179
L FAGE T + +TV+GA+ +G REA RI
Sbjct: 625 LFFAGEHTIRNYPATVHGALLSGLREAGRI 654
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRS---------LTTERLNTSAADLGAPVSNGQGKPV 149
+P+P + S W +P RGSYS + L + + + GAP Q P
Sbjct: 569 VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAP----QPIPR 624
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRI 179
L FAGE T + +TV+GA+ +G REA RI
Sbjct: 625 LFFAGEHTIRNYPATVHGALLSGLREAGRI 654
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRS---------LTTERLNTSAADLGAPVSNGQGKPV 149
+P+P + S W +P RGSYS + L + + + GAP Q P
Sbjct: 740 VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAP----QPIPR 795
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRI 179
L FAGE T + +TV+GA+ +G REA RI
Sbjct: 796 LFFAGEHTIRNYPATVHGALLSGLREAGRI 825
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRS---------LTTERLNTSAADLGAPVSNGQGKPV 149
+P+P + S W +P RGSYS + L + + + GAP Q P
Sbjct: 569 VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAP----QPIPR 624
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRI 179
L FAGE T + +TV+GA+ +G REA RI
Sbjct: 625 LFFAGEHTIRNYPATVHGALLSGLREAGRI 654
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRS---------LTTERLNTSAADLGAPVSNGQGKPV 149
+P+P + S W +P RGSYS + L + + + GAP Q P
Sbjct: 569 VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAP----QPIPR 624
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRI 179
L FAGE T + +TV+GA+ +G REA RI
Sbjct: 625 LFFAGEHTIRNYPATVHGALLSGLREAGRI 654
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRSL--TTERLNTSAADLGAPVSNGQGKPVLLFAGEA 156
+P+PT+ + W T+P + +YS + E + A D+ QG + FAGEA
Sbjct: 720 VPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDI-------QG--TVFFAGEA 770
Query: 157 TSEHQYSTVNGAVETGWREADRI 179
T+ H TV GA +G REA +I
Sbjct: 771 TNRHFPQTVTGAYLSGVREASKI 793
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRSL--TTERLNTSAADLGAPVSNGQGKPVLLFAGEA 156
+P+PT+ + W T+P + +YS + E + A D+ QG + FAGEA
Sbjct: 700 VPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDI-------QG--TVFFAGEA 750
Query: 157 TSEHQYSTVNGAVETGWREADRI 179
T+ H TV GA +G REA +I
Sbjct: 751 TNRHFPQTVTGAYLSGVREASKI 773
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRSL--TTERLNTSAADLGAPVSNGQGKPVLLFAGEA 156
+P+PT+ + W T+P + +YS + E + A D+ QG + FAGEA
Sbjct: 708 VPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDI-------QG--TVFFAGEA 758
Query: 157 TSEHQYSTVNGAVETGWREADRI 179
T+ H TV GA +G REA +I
Sbjct: 759 TNRHFPQTVTGAYLSGVREASKI 781
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 100 PEPTRCLHSSWGTNPHFRGSYS-CRSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEATS 158
P + S+W +P+ RG+YS C D+ +SNGQ + FAGE T
Sbjct: 430 PVLRNIIVSNWTRDPYSRGAYSACFP------GDDPVDMVVAMSNGQDSRIR-FAGEHTI 482
Query: 159 EHQYSTVNGAVETGWREADRILTL 182
GA E+G REA RI L
Sbjct: 483 MDGAGCAYGAWESGRREATRISDL 506
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 100 PEPTRCLHSSWGTNPHFRGSYS-CRSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEATS 158
P + S+W +P+ RG+YS C D+ +SNGQ + FAGE T
Sbjct: 430 PVLRNIIVSNWTRDPYSRGAYSACFP------GDDPVDMVVAMSNGQDSRIR-FAGEHTI 482
Query: 159 EHQYSTVNGAVETGWREADRILTL 182
GA E+G REA RI L
Sbjct: 483 MDGAGCAYGAWESGRREATRISDL 506
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 100 PEPTRCLHSSWGTNPHFRGSYS-CRSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEATS 158
P + S+W +P+ RG+YS C D+ +SNGQ + FAGE T
Sbjct: 430 PVLRNIIVSNWTRDPYSRGAYSACFP------GDDPVDMVVAMSNGQDSRIR-FAGEHTI 482
Query: 159 EHQYSTVNGAVETGWREADRILTL 182
GA E+G REA RI L
Sbjct: 483 MDGAGCAYGAWESGRREATRISDL 506
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 100 PEPTRCLHSSWGTNPHFRGSYS-CRSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEATS 158
P + S+W +P+ RG+YS C D+ +SNGQ + FAGE T
Sbjct: 430 PVLRNIIVSNWTRDPYSRGAYSACFP------GDDPVDMVVAMSNGQDSRIR-FAGEHTI 482
Query: 159 EHQYSTVNGAVETGWREADRILTL 182
GA E+G REA RI L
Sbjct: 483 MDGAGCAYGAWESGRREATRISDL 506
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 95 PKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFAG 154
P +P+ T L W ++ ++G++S + R L APV + F G
Sbjct: 378 PGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQ--LRAPVGR------VYFTG 429
Query: 155 EATSEHQYSTVNGAVETGWREADRIL 180
E TSEH V+GA +G A+ ++
Sbjct: 430 EHTSEHYNGYVHGAYLSGIDSAEILI 455
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 95 PKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFAG 154
P +P+ T L W ++ ++G++S + R L APV + F G
Sbjct: 378 PGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQ--LRAPVGR------VYFTG 429
Query: 155 EATSEHQYSTVNGAVETGWREADRIL 180
E TSEH V+GA +G A+ ++
Sbjct: 430 EHTSEHYNGYVHGAYLSGIDSAEILI 455
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 100 PEPTRCLHSSWGTNPHFRGSYS-CRSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEATS 158
P + S+W +P+ RG+YS C D SNGQ + FAGE T
Sbjct: 430 PVLRNIIVSNWTRDPYSRGAYSACFP------GDDPVDXVVAXSNGQDSRIR-FAGEHTI 482
Query: 159 EHQYSTVNGAVETGWREADRILTL 182
GA E+G REA RI L
Sbjct: 483 XDGAGCAYGAWESGRREATRISDL 506
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 94 GPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFA 153
GPK EP S WG+ RG+Y+ S L+ AD PV P+
Sbjct: 371 GPKAE--EPVVYYESDWGSEEWTRGAYAA-SFDLGGLHRYGADSRTPVG-----PIHFSC 422
Query: 154 GEATSEHQYSTVNGAVETGWREADRIL 180
+ +E Y V+GAV G R A I+
Sbjct: 423 SDIAAEG-YQHVDGAVRMGQRTAADII 448
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 94 GPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFA 153
GPK EP S WG+ RG Y+ S L+ AD PV P+
Sbjct: 371 GPKAE--EPVVYYESDWGSEEWTRGCYAA-SFDLGGLHRYGADSRTPVG-----PIHFSC 422
Query: 154 GEATSEHQYSTVNGAVETGWREADRIL 180
+ +E Y V+GAV G R A I+
Sbjct: 423 SDIAAEG-YQHVDGAVRMGQRTAADII 448
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 94 GPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFA 153
GPK EP S WG+ RG Y+ S L+ AD PV P+
Sbjct: 371 GPKAE--EPVVYYESDWGSEEWTRGCYTA-SFDLGGLHRYGADSRTPVG-----PIHFSC 422
Query: 154 GEATSEHQYSTVNGAVETGWREADRIL 180
+ +E Y V+GAV G R A I+
Sbjct: 423 SDIAAEG-YGHVDGAVRMGQRTAADII 448
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 94 GPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFA 153
GPK EP S WG+ RG Y+ S L+ AD PV P+
Sbjct: 371 GPKAE--EPVVYYESDWGSEEWTRGCYAA-SFDLGGLHRYGADSRTPVG-----PIHFSC 422
Query: 154 GEATSEHQYSTVNGAVETGWREADRIL 180
+ +E Y V+GAV G R A I+
Sbjct: 423 SDIAAEG-YQHVDGAVRMGQRTAADII 448
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRIL 180
+ FAG T+ H + GAVE G R A IL
Sbjct: 421 IYFAGTETATHWSGLMEGAVEAGERAAREIL 451
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRIL 180
+ FAG T+ H + GAVE G R A IL
Sbjct: 421 IYFAGTETATHWSGYMEGAVEAGERAAREIL 451
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRIL 180
+ FAG T+ H + GAVE G R A IL
Sbjct: 420 IYFAGTETATHWSGYMEGAVEAGERAAREIL 450
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRIL 180
+ FAG T+ H + GAVE G R A IL
Sbjct: 421 IYFAGTETATHWSGFMEGAVEAGERAAREIL 451
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRIL 180
+ FAG T+ H + GAVE G R A IL
Sbjct: 420 IYFAGTETATHWSGYMEGAVEAGERAAREIL 450
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRIL 180
+ FAG T+ H + GAVE G R A IL
Sbjct: 421 IYFAGTETATHWSGYMEGAVEAGERAAREIL 451
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRIL 180
+ FAG T+ H + GAVE G R A IL
Sbjct: 421 IYFAGTETATHWSGYMEGAVEAGERAAREIL 451
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRIL 180
+ FAG T+ H + GAVE G R A IL
Sbjct: 421 IYFAGTETATHWSGHMEGAVEAGERAAREIL 451
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRIL 180
+ FAG T+ H + GAVE G R A IL
Sbjct: 421 IYFAGTETATHWSGWMEGAVEAGERAAREIL 451
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 130 LNTSAADLGAPVSNGQGKPVLLFAGEATSEHQ---------YSTVNGAVETGWREADRIL 180
L+ S AD V +G G+P LLF +A +E Y ++ + RE D +L
Sbjct: 386 LHLSVADKAMRVISGLGRPSLLFKLKAVAESMKKIKELYLNYPRSPSSLGSWRREVDNVL 445
Query: 181 T 181
T
Sbjct: 446 T 446
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,534,849
Number of Sequences: 62578
Number of extensions: 214314
Number of successful extensions: 502
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 37
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)