BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13543
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NWM0|SMOX_HUMAN Spermine oxidase OS=Homo sapiens GN=SMOX PE=1 SV=1
Length = 555
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 12/91 (13%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAAD---LGAPV---SNGQGKPV-LL 151
IP+P R L S+WG+NP+FRGSYS ++ +S AD L P+ + + P+ +L
Sbjct: 461 IPKPRRILRSAWGSNPYFRGSYS-----YTQVGSSGADVEKLAKPLPYTESSKTAPMQVL 515
Query: 152 FAGEATSEHQYSTVNGAVETGWREADRILTL 182
F+GEAT YST +GA+ +G REA R++ +
Sbjct: 516 FSGEATHRKYYSTTHGALLSGQREAARLIEM 546
>sp|Q99K82|SMOX_MOUSE Spermine oxidase OS=Mus musculus GN=Smox PE=1 SV=1
Length = 555
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 12/91 (13%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAAD---LGAPV---SNGQGKPV-LL 151
IP+P R L S+WG+NP+FRGSYS ++ +S AD L P+ + + P+ +L
Sbjct: 461 IPKPRRILRSAWGSNPYFRGSYS-----YTQVGSSGADVEKLAKPLPYTESSKTAPMQVL 515
Query: 152 FAGEATSEHQYSTVNGAVETGWREADRILTL 182
F+GEAT YST +GA+ +G REA R++ +
Sbjct: 516 FSGEATHRKYYSTTHGALLSGQREAARLIEM 546
>sp|Q865R1|PAOX_BOVIN Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Bos taurus
GN=PAOX PE=1 SV=3
Length = 512
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPV-SNGQGKPV-LLFAGEA 156
+P P L S W + P+ RGSYS ++ + L P+ S+G+G + +LFAGEA
Sbjct: 417 LPAPRSMLRSCWHSAPYTRGSYSYVAVGSS--GDDMDRLAQPLPSDGKGAQLQVLFAGEA 474
Query: 157 TSEHQYSTVNGAVETGWREADRILTLKD 184
T YST +GA+ +GWREADR++TL D
Sbjct: 475 THRTFYSTTHGALLSGWREADRLMTLWD 502
>sp|Q6QHF9|PAOX_HUMAN Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Homo sapiens
GN=PAOX PE=1 SV=3
Length = 649
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRSL--TTERLNTSAADLGAPVSNGQGKPVLLFAGEA 156
+P P L S W + P+ RGSYS ++ T L+ A L A + Q + +LFAGEA
Sbjct: 554 LPAPKSVLRSRWHSAPYTRGSYSYVAVGSTGGDLDLLAQPLPADGAGAQLQ--ILFAGEA 611
Query: 157 TSEHQYSTVNGAVETGWREADRILTL 182
T YST +GA+ +GWREADR+L+L
Sbjct: 612 THRTFYSTTHGALLSGWREADRLLSL 637
>sp|Q8C0L6|PAOX_MOUSE Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Mus musculus
GN=Paox PE=1 SV=3
Length = 504
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 6/89 (6%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRSL--TTERLNTSAADLGAPVSNGQGKPV-LLFAGE 155
+P S W + P+ RGSYS ++ T + L+ A L +G G + +LFAGE
Sbjct: 409 LPAAKSVRRSQWHSAPYTRGSYSYVAVGSTGDDLDLMAQPLP---EDGTGTQLQVLFAGE 465
Query: 156 ATSEHQYSTVNGAVETGWREADRILTLKD 184
AT YST +GA+ +GWREADR+++L D
Sbjct: 466 ATHRTFYSTTHGALLSGWREADRLVSLWD 494
>sp|Q9LID0|LDL2_ARATH Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis
thaliana GN=LDL2 PE=2 SV=1
Length = 746
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 14/92 (15%)
Query: 93 HGPK-VTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAAD---LGAPVSNGQGKP 148
+GPK V +P+P + + + WG++P GSYS R+ +S D L VSN
Sbjct: 513 YGPKGVVVPDPIQTVCTRWGSDPLSYGSYS-----HVRVGSSGVDYDILAESVSNR---- 563
Query: 149 VLLFAGEATSEHQYSTVNGAVETGWREADRIL 180
L FAGEAT+ +T++GA +G REA +IL
Sbjct: 564 -LFFAGEATTRQHPATMHGAYLSGLREASKIL 594
>sp|Q9SU79|PAO5_ARATH Probable polyamine oxidase 5 OS=Arabidopsis thaliana GN=PAO5 PE=2
SV=1
Length = 533
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 17/110 (15%)
Query: 83 LRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVS 142
L G D+ K+T + L S WG++P FRGSYS ++ + + A P
Sbjct: 422 LTNGSLNDDDEAMKIT-----KVLKSKWGSDPLFRGSYSYVAVGSSGDDLDAMAEPLPKI 476
Query: 143 NGQGKPV------------LLFAGEATSEHQYSTVNGAVETGWREADRIL 180
N + V ++FAGEAT YST +GA +G REA+R+L
Sbjct: 477 NKKVGQVNGHDQAKVHELQVMFAGEATHRTHYSTTHGAYYSGLREANRLL 526
>sp|Q6YYZ1|LDL2_ORYSJ Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa
subsp. japonica GN=Os08g0143400 PE=2 SV=1
Length = 763
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 8/89 (8%)
Query: 93 HGPK-VTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLL 151
+GPK VT+P+P + + WG++P GSYS R+ +S D + + L
Sbjct: 515 YGPKGVTVPDPIQSCCTRWGSDPLCSGSYS-----HIRVGSSGTDYDILAESVNDR--LF 567
Query: 152 FAGEATSEHQYSTVNGAVETGWREADRIL 180
FAGEAT+ +T++GA+ +G REA +IL
Sbjct: 568 FAGEATNRAYPATMHGALLSGLREASKIL 596
>sp|P18487|A37C_DROME Protein anon-37Cs OS=Drosophila melanogaster GN=anon-37Cs PE=2 SV=3
Length = 504
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAAD---LGAPVSNGQGKPVLLFAGE 155
+P P L S+W T+ + G S N+SA D L AP+ G+ P LLFAG+
Sbjct: 417 VPYPQELLRSNWSTSACYLGGRPYFST-----NSSARDVQRLAAPL--GEKSPGLLFAGD 469
Query: 156 ATSEHQYSTVNGAVETGWREADRIL 180
ATS + T++ A +G REA RI+
Sbjct: 470 ATSLRGFGTIDAARSSGIREAQRII 494
>sp|P31225|CBP1_CANAL Corticosteroid-binding protein OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=CBP1 PE=1 SV=2
Length = 489
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSN-----GQGKPVLLFA 153
IP+P + + W TNP+ RGSYS T N +DL +S G +P + FA
Sbjct: 393 IPDPINTIVTDWTTNPYIRGSYS-----TMYTNDDPSDLIISLSGDFEDLGISEPYIKFA 447
Query: 154 GEATSEHQYSTVNGAVETGWREADRIL 180
GE T+ V+GA +G AD IL
Sbjct: 448 GEHTTSEGTGCVHGAYMSGIYAADCIL 474
>sp|O96570|A37C_DROLE Protein anon-37Cs OS=Drosophila lebanonensis GN=anon-37Cs PE=3 SV=1
Length = 544
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 18/89 (20%)
Query: 99 IPEPTRCLHSSWGTN-------PHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLL 151
+P P L S+W T+ P+F + S R + +RL D+ P LL
Sbjct: 458 VPYPQALLRSNWSTSACYLGGRPYFSTTSSARDV--QRLAEPLGDIA---------PTLL 506
Query: 152 FAGEATSEHQYSTVNGAVETGWREADRIL 180
FAG+AT+ + T++GA +G REA RI+
Sbjct: 507 FAGDATALKGFGTIDGARTSGIREAQRII 535
>sp|O96566|A37C_DROSI Protein anon-37Cs (Fragment) OS=Drosophila simulans GN=anon-37Cs
PE=3 SV=1
Length = 501
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 18/91 (19%)
Query: 99 IPEPTRCLHSSWGTN-------PHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLL 151
+P P L S+W T+ P+F S R + L AP+ G+ P LL
Sbjct: 414 VPYPQELLRSNWSTSACYLGGRPYFSTINSARDVQR---------LAAPL--GEKSPGLL 462
Query: 152 FAGEATSEHQYSTVNGAVETGWREADRILTL 182
FAG+ATS + + T++ A +G REA RI+
Sbjct: 463 FAGDATSLNGFGTIDAARSSGIREAQRIIDF 493
>sp|Q6ZQ88|KDM1A_MOUSE Lysine-specific histone demethylase 1A OS=Mus musculus GN=Kdm1a
PE=1 SV=2
Length = 853
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRS---------LTTERLNTSAADLGAPVSNGQGKPV 149
+P+P + S W +P RGSYS + L + + + GAP Q P
Sbjct: 741 VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAP----QPIPR 796
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRI 179
L FAGE T + +TV+GA+ +G REA RI
Sbjct: 797 LFFAGEHTIRNYPATVHGALLSGLREAGRI 826
>sp|O60341|KDM1A_HUMAN Lysine-specific histone demethylase 1A OS=Homo sapiens GN=KDM1A
PE=1 SV=2
Length = 852
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRS---------LTTERLNTSAADLGAPVSNGQGKPV 149
+P+P + S W +P RGSYS + L + + + GAP Q P
Sbjct: 740 VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAP----QPIPR 795
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRI 179
L FAGE T + +TV+GA+ +G REA RI
Sbjct: 796 LFFAGEHTIRNYPATVHGALLSGLREAGRI 825
>sp|Q8VXV7|LDL1_ARATH Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis
thaliana GN=LDL1 PE=1 SV=1
Length = 844
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Query: 63 NTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSC 122
+ A+R L+ T V + + G H + +P+P + L S WG + GSYS
Sbjct: 597 DAAERFETLSPTDSVKRVLQILRGIY----HPKGIVVPDPVQALCSRWGQDKFSYGSYSY 652
Query: 123 RSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRIL 180
++ S+ D ++ G + FAGEAT+ +T++GA +G REA IL
Sbjct: 653 VAVG------SSGDDYDILAESVGDGRVFFAGEATNRQYPATMHGAFLSGMREAANIL 704
>sp|Q8CIG3|KDM1B_MOUSE Lysine-specific histone demethylase 1B OS=Mus musculus GN=Kdm1b
PE=1 SV=1
Length = 826
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEATS 158
IPEPT+ + W T P + +YS + A D+ A G + FAGEAT+
Sbjct: 750 IPEPTKYFVTRWSTEPWIQMAYS---FVKTFGSGEAYDIIAEEIQG----TVFFAGEATN 802
Query: 159 EHQYSTVNGAVETGWREADRI 179
H TV GA +G REA +I
Sbjct: 803 RHFPQTVTGAYLSGVREASKI 823
>sp|Q8NB78|KDM1B_HUMAN Lysine-specific histone demethylase 1B OS=Homo sapiens GN=KDM1B
PE=1 SV=3
Length = 822
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 99 IPEPTRCLHSSWGTNPHFRGSYSCRSL--TTERLNTSAADLGAPVSNGQGKPVLLFAGEA 156
+P+PT+ + W T+P + +YS + E + A D+ QG + FAGEA
Sbjct: 746 VPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDI-------QG--TVFFAGEA 796
Query: 157 TSEHQYSTVNGAVETGWREADRI 179
T+ H TV GA +G REA +I
Sbjct: 797 TNRHFPQTVTGAYLSGVREASKI 819
>sp|Q9CAE3|LDL3_ARATH Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis
thaliana GN=FLD PE=1 SV=1
Length = 789
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 97 VTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEA 156
+ +P+P + + + WG +P GSYS ++ ++ D ++ G L FAGEA
Sbjct: 543 INVPDPLQTVCTRWGGDPFSLGSYSNVAVG------ASGDDYDILAESVGDGRLFFAGEA 596
Query: 157 TSEHQYSTVNGAVETGWREA 176
T+ +T++GA TG REA
Sbjct: 597 TTRRYPATMHGAFVTGLREA 616
>sp|Q7XUR2|LDL3_ORYSJ Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa
subsp. japonica GN=Os04g0560300 PE=2 SV=2
Length = 811
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 97 VTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAAD---LGAPVSNGQGKPVLLFA 153
+ +P+P + + + WGT+ GSYS ++ S D L V +G+ L FA
Sbjct: 557 IEVPDPLQSVCTRWGTDSFSLGSYSHVAV-----GASGDDYDILAESVGDGR----LFFA 607
Query: 154 GEATSEHQYSTVNGAVETGWREADRI 179
GEAT+ +T++GA +G REA I
Sbjct: 608 GEATTRRYPATMHGAFISGLREAANI 633
>sp|Q01H90|LDL3_ORYSI Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa
subsp. indica GN=B0103C08-B0602B01.13 PE=2 SV=1
Length = 811
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 97 VTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAAD---LGAPVSNGQGKPVLLFA 153
+ +P+P + + + WGT+ GSYS ++ S D L V +G+ L FA
Sbjct: 557 IEVPDPLQSVCTRWGTDSFSLGSYSHVAV-----GASGDDYDILAESVGDGR----LFFA 607
Query: 154 GEATSEHQYSTVNGAVETGWREADRI 179
GEAT+ +T++GA +G REA I
Sbjct: 608 GEATTRRYPATMHGAFISGLREAANI 633
>sp|Q6Z690|LDL1_ORYSJ Lysine-specific histone demethylase 1 homolog 1 OS=Oryza sativa
subsp. japonica GN=Os02g0755200 PE=2 SV=1
Length = 849
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 18/92 (19%)
Query: 95 PK-VTIPEPTRCLHSSWGTNPHFRGSYSCRSLTT-----ERLNTSAADLGAPVSNGQGKP 148
PK + +P+P + + + WGT+ GSYS ++ + + L S D
Sbjct: 634 PKGIEVPKPLQAICTRWGTDKFTYGSYSYVAIGSSGDDYDILAESVCDR----------- 682
Query: 149 VLLFAGEATSEHQYSTVNGAVETGWREADRIL 180
+ FAGEAT+ +T++GA+ +G+REA I+
Sbjct: 683 -VFFAGEATNRRYPATMHGALLSGYREAANIV 713
>sp|Q9VW97|LSDA_DROME Possible lysine-specific histone demethylase 1 OS=Drosophila
melanogaster GN=Su(var)3-3 PE=1 SV=1
Length = 890
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 98 TIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPV-----SNGQGKPVLLF 152
++P+P + + W ++P RGSYS S+ + + L APV + +G P L F
Sbjct: 740 SVPQPKETVVTRWRSDPWARGSYSYVSVGSSGSDYDL--LAAPVIPPSSKDAEGLPRLFF 797
Query: 153 AGEATSEHQYSTVNGAVETGWREADRI 179
AGE T + +TV+GA +G REA RI
Sbjct: 798 AGEHTIRNYPATVHGAYLSGLREAGRI 824
>sp|Q9SKX5|PAO2_ARATH Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2
SV=1
Length = 490
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 18/81 (22%)
Query: 102 PTRCLHSSWGTNPHFRGSYSCRSL-----TTERLNTSAADLGAPVSNGQGKPVLLFAGEA 156
P + L S WG++ + GSYS + ERL PV N L FAGEA
Sbjct: 388 PVQYLVSRWGSDVNSMGSYSYDIVGKPHDLYERLRV-------PVDN------LFFAGEA 434
Query: 157 TSEHQYSTVNGAVETGWREAD 177
TS +V+GA TG A+
Sbjct: 435 TSSSFPGSVHGAYSTGLMAAE 455
>sp|P50264|FMS1_YEAST Polyamine oxidase FMS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=FMS1 PE=1 SV=1
Length = 508
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 100 PEPTRCLHSSWGTNPHFRGSYS-CRSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEATS 158
P + S+W +P+ RG+YS C D+ +SNGQ + FAGE T
Sbjct: 430 PVLRNIIVSNWTRDPYSRGAYSACFP------GDDPVDMVVAMSNGQDSRIR-FAGEHTI 482
Query: 159 EHQYSTVNGAVETGWREADRILTL 182
GA E+G REA RI L
Sbjct: 483 MDGAGCAYGAWESGRREATRISDL 506
>sp|O64411|PAO_MAIZE Polyamine oxidase OS=Zea mays GN=PAO PE=1 SV=1
Length = 500
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 95 PKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFAG 154
P +P+ T L W ++ ++G++S + R L APV + F G
Sbjct: 406 PGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQ--LRAPVGR------VYFTG 457
Query: 155 EATSEHQYSTVNGAVETGWREADRIL 180
E TSEH V+GA +G A+ ++
Sbjct: 458 EHTSEHYNGYVHGAYLSGIDSAEILI 483
>sp|Q9LYT1|PAO3_ARATH Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1
Length = 488
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 102 PTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEATSEHQ 161
P L S WG++ + GSYS + + L P+ N L FAGEATS
Sbjct: 389 PINYLVSRWGSDINSLGSYSYD--IVNKPHDLYERLRVPLDN------LFFAGEATSSSY 440
Query: 162 YSTVNGAVETGWREAD 177
+V+GA TG A+
Sbjct: 441 PGSVHGAYSTGVLAAE 456
>sp|Q8H191|PAO4_ARATH Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1
SV=1
Length = 497
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 100 PEPTRCLHSSWGTNPHFRGSYSCRSL-TTERLNTSAADLGAPVSNGQGKPVLLFAGEATS 158
P+P + L + WGT+P+ G Y+ + E L LG PV N + F GEA +
Sbjct: 388 PDPAQYLVTRWGTDPNTLGCYAYDVVGMPEDLYPR---LGEPVDN------IFFGGEAVN 438
Query: 159 EHQYSTVNGAVETG 172
+ +GA G
Sbjct: 439 VEHQGSAHGAFLAG 452
>sp|Q9XWP6|LSD1_CAEEL Probable lysine-specific histone demethylase 1 OS=Caenorhabditis
elegans GN=spr-5 PE=1 SV=1
Length = 770
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 108 SSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNG 167
+ W + GS + SL TE TS D+ P+ G + FAGE T ST+ G
Sbjct: 607 TRWHDDELAFGSGAFMSLRTE--TTSFDDVMEPLKTSDGMSRVYFAGEHTCSSYTSTIQG 664
Query: 168 AVETGWREADRI 179
A +G R A I
Sbjct: 665 AWMSGARAAADI 676
>sp|Q9FNA2|PAO1_ARATH Polyamine oxidase 1 OS=Arabidopsis thaliana GN=PAO1 PE=1 SV=1
Length = 472
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 19/105 (18%)
Query: 87 EAQADNHGPK-----------VTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAA 135
EAQ+D K TIP T L W N RGSYS + ++ N
Sbjct: 334 EAQSDQETMKEAMSVLRDMFGATIPYATDILVPRWWNNRFQRGSYSNYPMISD--NQLLQ 391
Query: 136 DLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRIL 180
++ APV + F GE TSE V+G G + +L
Sbjct: 392 NIKAPVGR------IFFTGEHTSEKFSGYVHGGYLAGIDTSKSLL 430
>sp|B8NDZ1|RRF2M_ASPFN Ribosome-releasing factor 2, mitochondrial OS=Aspergillus flavus
(strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722
/ SRRC 167) GN=mef2 PE=3 SV=1
Length = 909
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 76 CVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPH--FRGSYSCRSLTTE-RLNT 132
VA L H RTG+ G K T PEP L T P F S SL+ E RL
Sbjct: 492 VVAGLKHTRTGDTLVTYSGNKATPPEPLNTLQLRPITVPPPVFFASVEPHSLSEEKRLQE 551
Query: 133 SAADL 137
S A L
Sbjct: 552 SLAML 556
>sp|A2R994|RRF2M_ASPNC Ribosome-releasing factor 2, mitochondrial OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=mef2 PE=3 SV=1
Length = 861
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 19/119 (15%)
Query: 76 CVASLSHLRTGEAQADNHGPKVTIPEP--TRCLHSSWGTNPHFRGSYSCRSLTTER---- 129
VA L H RTG+ G K+T PEP T L P F S SL+ E+
Sbjct: 444 VVAGLKHARTGDTLVSYAGNKLTPPEPLDTLQLRPIQVPPPVFFASIEPHSLSEEKKIHE 503
Query: 130 ----LNTSAADLGAPVSNGQGKPVLLFAGE---------ATSEHQYSTVNGAVETGWRE 175
L L V G+ +L GE ++ + G +E G+RE
Sbjct: 504 CLALLLREDPSLHVTVDEDSGQTLLSGMGELHLEIARDRLINDLKAKATMGRIEIGYRE 562
>sp|Q6PCP7|GP156_MOUSE Probable G-protein coupled receptor 156 OS=Mus musculus GN=Gpr156
PE=2 SV=2
Length = 798
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 86 GEAQADNHGPKVTIPEPTRCLHSSWGTNP--HFRGSYSCRS-LTTERLNTSAADLGAPVS 142
GE Q H K P++ HS + +P H R SC L TE+ N L VS
Sbjct: 320 GENQTMRHMAKY-FSTPSKSFHSQFDEDPSCHLRDEKSCMERLLTEK-NAVIESLQEQVS 377
Query: 143 NGQGKPVLLFAGEAT 157
N + K V L + E T
Sbjct: 378 NAKEKLVKLMSAECT 392
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,804,379
Number of Sequences: 539616
Number of extensions: 3392919
Number of successful extensions: 14356
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 14211
Number of HSP's gapped (non-prelim): 110
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)