Query psy13543
Match_columns 184
No_of_seqs 184 out of 1184
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 21:58:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02676 polyamine oxidase 99.9 1.2E-23 2.7E-28 192.7 10.9 106 53-184 369-474 (487)
2 PLN02268 probable polyamine ox 99.9 6.8E-23 1.5E-27 183.0 11.5 137 13-183 288-434 (435)
3 PLN03000 amine oxidase 99.9 6.4E-23 1.4E-27 198.1 10.4 110 53-183 514-623 (881)
4 PLN02976 amine oxidase 99.9 4E-22 8.6E-27 198.9 11.9 106 54-183 1081-1186(1713)
5 PLN02568 polyamine oxidase 99.9 4.2E-22 9.1E-27 184.9 10.1 122 53-183 396-535 (539)
6 PLN02529 lysine-specific histo 99.8 5.1E-21 1.1E-25 183.1 10.4 108 54-183 491-598 (738)
7 COG1231 Monoamine oxidase [Ami 99.8 4.5E-21 9.7E-26 173.3 9.2 142 12-183 295-447 (450)
8 PLN02328 lysine-specific histo 99.8 3E-20 6.4E-25 179.0 9.8 109 54-183 571-679 (808)
9 KOG0685|consensus 99.8 9.7E-19 2.1E-23 158.8 8.3 112 52-182 377-490 (498)
10 KOG0029|consensus 99.8 2.5E-18 5.3E-23 158.7 9.8 141 12-183 306-459 (501)
11 PF01593 Amino_oxidase: Flavin 99.5 1.7E-14 3.7E-19 123.6 8.9 102 55-180 349-450 (450)
12 TIGR02731 phytoene_desat phyto 99.4 1.2E-12 2.7E-17 117.7 6.7 88 72-180 366-453 (453)
13 TIGR03467 HpnE squalene-associ 99.1 3.2E-10 6.9E-15 99.3 7.7 85 72-181 335-419 (419)
14 PLN02612 phytoene desaturase 99.0 3.7E-10 8.1E-15 105.7 6.5 103 54-183 446-548 (567)
15 PRK07233 hypothetical protein; 98.7 3.8E-08 8.2E-13 86.9 6.1 88 71-183 344-431 (434)
16 PRK12416 protoporphyrinogen ox 98.4 1.1E-06 2.3E-11 79.5 8.2 96 54-183 365-461 (463)
17 PRK11883 protoporphyrinogen ox 98.4 1.6E-06 3.4E-11 77.2 8.5 84 71-181 367-450 (451)
18 TIGR02732 zeta_caro_desat caro 98.2 2.7E-06 5.9E-11 78.1 6.5 87 69-180 388-474 (474)
19 PLN02576 protoporphyrinogen ox 98.2 6.2E-06 1.3E-10 75.1 8.7 100 54-183 388-487 (496)
20 PLN02487 zeta-carotene desatur 98.1 1.2E-05 2.7E-10 75.8 8.1 89 69-182 464-552 (569)
21 TIGR00562 proto_IX_ox protopor 97.7 0.0003 6.6E-09 63.2 9.7 93 55-184 365-461 (462)
22 PRK07208 hypothetical protein; 97.2 0.00053 1.2E-08 62.2 5.8 88 71-182 373-460 (479)
23 COG3349 Uncharacterized conser 95.5 0.022 4.7E-07 53.2 5.2 87 70-182 376-462 (485)
24 COG3380 Predicted NAD/FAD-depe 95.4 0.031 6.8E-07 49.1 5.3 80 72-183 252-331 (331)
25 TIGR02730 carot_isom carotene 93.0 0.3 6.4E-06 44.9 6.8 99 71-184 395-493 (493)
26 TIGR02734 crtI_fam phytoene de 87.6 1.2 2.6E-05 40.8 5.6 33 149-183 460-492 (502)
27 TIGR02733 desat_CrtD C-3',4' d 85.7 2.1 4.5E-05 39.1 6.1 37 138-182 455-491 (492)
28 COG1232 HemY Protoporphyrinoge 81.8 5.9 0.00013 36.8 7.3 86 69-180 358-443 (444)
29 TIGR03862 flavo_PP4765 unchara 70.9 5.3 0.00012 36.2 3.8 37 148-184 337-376 (376)
30 TIGR01292 TRX_reduct thioredox 56.4 14 0.0003 30.5 3.5 37 146-183 264-300 (300)
31 PF03486 HI0933_like: HI0933-l 44.4 23 0.00051 32.3 3.2 30 148-177 376-408 (409)
32 PRK12810 gltD glutamate syntha 42.9 38 0.00082 31.0 4.4 36 146-183 429-464 (471)
33 PRK12831 putative oxidoreducta 40.8 40 0.00086 31.0 4.2 35 147-183 426-460 (464)
34 PRK12769 putative oxidoreducta 39.6 46 0.00099 31.9 4.5 37 146-184 616-652 (654)
35 PRK04176 ribulose-1,5-biphosph 39.3 35 0.00077 28.8 3.4 37 148-184 214-255 (257)
36 PRK05329 anaerobic glycerol-3- 38.2 47 0.001 30.5 4.2 73 104-182 341-419 (422)
37 TIGR00292 thiazole biosynthesi 36.8 44 0.00095 28.3 3.6 37 148-184 213-254 (254)
38 PRK12809 putative oxidoreducta 36.6 46 0.00099 31.9 4.0 37 146-184 599-635 (639)
39 TIGR01316 gltA glutamate synth 35.8 52 0.0011 29.9 4.1 35 147-183 415-449 (449)
40 PRK12771 putative glutamate sy 33.9 58 0.0012 30.6 4.2 35 147-183 409-443 (564)
41 COG1635 THI4 Ribulose 1,5-bisp 33.2 36 0.00078 29.4 2.4 38 147-184 218-260 (262)
42 KOG1276|consensus 31.4 2E+02 0.0042 27.2 7.0 83 72-180 407-490 (491)
43 TIGR01816 sdhA_forward succina 30.8 73 0.0016 30.1 4.3 34 149-182 355-395 (565)
44 PRK09078 sdhA succinate dehydr 30.2 77 0.0017 30.2 4.4 38 139-182 383-427 (598)
45 PRK10157 putative oxidoreducta 30.0 70 0.0015 28.9 3.9 36 148-183 295-335 (428)
46 PRK11749 dihydropyrimidine deh 29.6 77 0.0017 28.8 4.1 35 147-183 417-451 (457)
47 COG1206 Gid NAD(FAD)-utilizing 28.6 52 0.0011 30.2 2.8 35 144-180 331-368 (439)
48 TIGR01317 GOGAT_sm_gam glutama 26.8 85 0.0018 29.0 4.0 36 146-183 443-478 (485)
49 TIGR01318 gltD_gamma_fam gluta 26.5 1E+02 0.0022 28.3 4.3 35 147-183 431-465 (467)
50 PLN02661 Putative thiazole syn 25.9 76 0.0017 28.7 3.4 37 148-184 287-328 (357)
51 PRK12814 putative NADPH-depend 25.7 1E+02 0.0022 29.7 4.4 36 146-183 465-500 (652)
52 PRK12779 putative bifunctional 25.5 87 0.0019 31.8 4.0 36 146-183 591-626 (944)
53 COG2081 Predicted flavoprotein 24.9 79 0.0017 29.2 3.3 74 104-183 327-407 (408)
54 PRK08205 sdhA succinate dehydr 24.6 1.1E+02 0.0025 28.9 4.4 34 149-182 377-417 (583)
55 PRK12778 putative bifunctional 24.5 99 0.0021 30.2 4.1 36 146-183 714-749 (752)
56 PRK10015 oxidoreductase; Provi 24.2 97 0.0021 28.1 3.8 36 148-183 295-335 (429)
57 PF02083 Urotensin_II: Urotens 24.2 29 0.00062 16.2 0.2 6 13-18 4-9 (12)
58 PRK06069 sdhA succinate dehydr 24.0 1.1E+02 0.0024 28.8 4.2 39 138-182 368-413 (577)
59 PRK06452 sdhA succinate dehydr 23.7 1.1E+02 0.0023 29.0 4.0 34 149-182 362-402 (566)
60 TIGR00275 flavoprotein, HI0933 23.2 73 0.0016 28.5 2.8 29 148-176 368-399 (400)
61 PRK05335 tRNA (uracil-5-)-meth 23.0 1.1E+02 0.0023 28.5 3.8 33 147-182 330-362 (436)
62 PRK04965 NADH:flavorubredoxin 22.5 1E+02 0.0023 26.9 3.5 35 147-181 265-301 (377)
63 PRK12775 putative trifunctiona 21.7 1.3E+02 0.0028 30.8 4.4 36 146-183 719-754 (1006)
64 PLN00128 Succinate dehydrogena 21.7 1.4E+02 0.003 28.9 4.4 38 139-182 421-465 (635)
65 PRK12770 putative glutamate sy 21.2 1.6E+02 0.0034 25.6 4.4 35 147-183 315-349 (352)
66 PTZ00139 Succinate dehydrogena 21.0 1.3E+02 0.0029 28.8 4.2 34 149-182 404-444 (617)
67 PF01134 GIDA: Glucose inhibit 21.0 1.2E+02 0.0027 27.7 3.8 33 148-183 356-388 (392)
68 TIGR02023 BchP-ChlP geranylger 20.6 1.6E+02 0.0034 25.9 4.3 36 148-183 264-302 (388)
No 1
>PLN02676 polyamine oxidase
Probab=99.90 E-value=1.2e-23 Score=192.70 Aligned_cols=106 Identities=28% Similarity=0.425 Sum_probs=94.8
Q ss_pred hhcccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCcccccc
Q psy13543 53 NGRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNT 132 (184)
Q Consensus 53 ~a~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~ 132 (184)
.++.+..+++++ +++.++++|+++||+. +++|+.+..++|.+|||++|+|++++||+.+.
T Consensus 369 ~a~~~~~~s~e~-------~~~~vl~~L~~~~g~~-----------~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~-- 428 (487)
T PLN02676 369 ESRRIEQQPDSE-------TKAEIMEVLRKMFGPN-----------IPEATDILVPRWWSNRFFKGSYSNWPIGVSRY-- 428 (487)
T ss_pred HHHHHHhCCHHH-------HHHHHHHHHHHHhCCC-----------CCCcceEEecccCCCCCCCcccCCCCCCCChh--
Confidence 356677777766 8999999999999853 45699999999999999999999999998764
Q ss_pred chHhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhcC
Q psy13543 133 SAADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLKD 184 (184)
Q Consensus 133 ~~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l~ 184 (184)
..+.|++|++ |||||||||+..|+||||||++||+|||++|++.|.
T Consensus 429 ~~~~L~~P~g------ri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~ 474 (487)
T PLN02676 429 EFDQIRAPVG------RVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIK 474 (487)
T ss_pred HHHHHhCCCC------ceEEeccccccccccchHHHHHHHHHHHHHHHHHhc
Confidence 7789999997 999999999999999999999999999999998763
No 2
>PLN02268 probable polyamine oxidase
Probab=99.89 E-value=6.8e-23 Score=183.00 Aligned_cols=137 Identities=29% Similarity=0.453 Sum_probs=107.1
Q ss_pred chhhhhhcccCCCCCCC--C------C-CCCCceeee-eehhhhhhHHhhhhcccccCChhhhhccchHHHHHHHHHHHh
Q psy13543 13 DYVWWKHLMYGGGGGGG--G------D-APEKHKLII-VGAGAIAENRQKNGRNLSKSGQNTAKRSNHLNQTFCVASLSH 82 (184)
Q Consensus 13 ~~~~~~~~~~~~~~~~~--g------~-~~~~~~~~~-~~~g~~a~~~~~~a~~l~~~~~~~~~~~~~~~~~~vl~~L~~ 82 (184)
+..||++.++.|..... + . -+.++.+++ +..| ..++.+.++++++ +++.++++|.+
T Consensus 288 ~~~fw~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g-------~~a~~~~~~~~~e-------~~~~v~~~L~~ 353 (435)
T PLN02268 288 DSVFWPNVEFLGVVAPTSYGCSYFLNLHKATGHPVLVYMPAG-------RLARDIEKLSDEA-------AANFAMSQLKK 353 (435)
T ss_pred CCCCCCCCceeeccCCCCCCceEEEecccCCCCCEEEEEecc-------HHHHHHHhCCHHH-------HHHHHHHHHHH
Confidence 56799998877655431 0 0 112233332 2222 2245566666666 99999999999
Q ss_pred hcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeEEEccccccCcCC
Q psy13543 83 LRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEATSEHQY 162 (184)
Q Consensus 83 lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~ 162 (184)
+||.. ++|+.+.+++|..|||++|+|++..||+.+. .++.|++|++ |||||||||+..++
T Consensus 354 ~~~~~------------~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~--~~~~l~~p~~------~l~FAGe~ts~~~~ 413 (435)
T PLN02268 354 MLPDA------------TEPVQYLVSRWGSDPNSLGCYSYDLVGKPHD--LYERLRAPVD------NLFFAGEATSSDFP 413 (435)
T ss_pred HcCCC------------CCccEEEecccCCCCCCCccCCCCCCCCCHH--HHHHHhCCCC------CeEEeeccCCCccc
Confidence 99742 3599999999999999999999999998664 6788999997 89999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHhc
Q psy13543 163 STVNGAVETGWREADRILTLK 183 (184)
Q Consensus 163 G~veGA~~SG~raA~~Il~~l 183 (184)
||||||++||+|||++|++.|
T Consensus 414 g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 414 GSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred ccHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999876
No 3
>PLN03000 amine oxidase
Probab=99.88 E-value=6.4e-23 Score=198.12 Aligned_cols=110 Identities=25% Similarity=0.379 Sum_probs=96.2
Q ss_pred hhcccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCcccccc
Q psy13543 53 NGRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNT 132 (184)
Q Consensus 53 ~a~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~ 132 (184)
.+..+..+++++ +++.|+.+|+++||+. ...+|+|+.+.+++|.+|||++|+|+++.||+.+.
T Consensus 514 ~A~~le~lSdeE-------~ve~vl~~Lrkifg~~--------~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~-- 576 (881)
T PLN03000 514 AAHKFETMPPTD-------AVTRVLHILRGIYEPQ--------GINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGD-- 576 (881)
T ss_pred hhHHhhcCCHHH-------HHHHHHHHHHHHhCcc--------ccccCCceEEEEccCCCCCCCCccccCCCCCCchH--
Confidence 356677777666 8999999999999853 12467899999999999999999999999998875
Q ss_pred chHhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 133 SAADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 133 ~~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+++.|++|+.+ +|||||||||+..|+||||||++||+|||++|+..+
T Consensus 577 ~~d~LaePv~~----GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l 623 (881)
T PLN03000 577 DYDILAESVGD----GRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSA 623 (881)
T ss_pred HHHHHhCcCCC----CcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHh
Confidence 88999999853 399999999999999999999999999999999765
No 4
>PLN02976 amine oxidase
Probab=99.87 E-value=4e-22 Score=198.87 Aligned_cols=106 Identities=30% Similarity=0.486 Sum_probs=94.2
Q ss_pred hcccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccc
Q psy13543 54 GRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTS 133 (184)
Q Consensus 54 a~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~ 133 (184)
++.+..+++++ +++.++.+|+++||.. .+|+|+.+.+++|.+|||++|+|++.+||+.+. +
T Consensus 1081 AreiEsLSDEE-------~Ve~ALe~LrKlFG~~----------~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~--d 1141 (1713)
T PLN02976 1081 AIDGQSMSSSD-------HVNHALMVLRKLFGEA----------LVPDPVASVVTDWGRDPFSYGAYSYVAIGASGE--D 1141 (1713)
T ss_pred HHHHhhCCHHH-------HHHHHHHHHHHHcCcc----------cccCcceeEEecCCCCCCcCccccCCCCCCCch--H
Confidence 44556666655 8999999999999953 356899999999999999999999999998774 7
Q ss_pred hHhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 134 AADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 134 ~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+..|++|+++ |||||||||+..|+||||||++||+|||++|+..|
T Consensus 1142 ~d~LAePVgg-----RLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L 1186 (1713)
T PLN02976 1142 YDILGRPVEN-----CLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDIL 1186 (1713)
T ss_pred HHHHhCCCCC-----cEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 8899999984 89999999999999999999999999999999875
No 5
>PLN02568 polyamine oxidase
Probab=99.87 E-value=4.2e-22 Score=184.93 Aligned_cols=122 Identities=31% Similarity=0.407 Sum_probs=98.4
Q ss_pred hhcccccCChhhhhccchHHHHHHHHHHHhhcCCcccc--------cCCC---CCCCCCCCeeeccccCCCCCCCCCCCC
Q psy13543 53 NGRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQA--------DNHG---PKVTIPEPTRCLHSSWGTNPHFRGSYS 121 (184)
Q Consensus 53 ~a~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~--------~~~~---~~~~~p~p~~~~~~~W~~Dp~s~Gsys 121 (184)
.|+.+..+++++ +++.++.+|+++||..... .+|+ ++...++|+.+++++|.+|||++|+||
T Consensus 396 ~A~~~e~l~~~~-------~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs 468 (539)
T PLN02568 396 EALELEKLSDEE-------IIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYS 468 (539)
T ss_pred HHHHHHcCCHHH-------HHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccC
Confidence 467777777776 9999999999999854220 0000 112346899999999999999999999
Q ss_pred CCCCCccccccchHhhcCccCC-------CCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 122 CRSLTTERLNTSAADLGAPVSN-------GQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 122 ~~~~g~~~~~~~~~~L~~P~~~-------~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+++||+... +.+.|++|+.+ ....+|||||||||+..|+||||||++||+|||++|+...
T Consensus 469 ~~~~g~~~~--~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~ 535 (539)
T PLN02568 469 YVAVGSSGD--DLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHY 535 (539)
T ss_pred CCcCCCChh--HHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 999999874 78999999962 0122389999999999999999999999999999999864
No 6
>PLN02529 lysine-specific histone demethylase 1
Probab=99.84 E-value=5.1e-21 Score=183.07 Aligned_cols=108 Identities=29% Similarity=0.471 Sum_probs=93.2
Q ss_pred hcccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccc
Q psy13543 54 GRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTS 133 (184)
Q Consensus 54 a~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~ 133 (184)
++.+..+++++ +++.++.+|+++||++ ...+|+|+.+.+++|.+|||++|+|+++.|++... +
T Consensus 491 A~~le~lsdee-------ii~~vl~~L~~ifgp~--------~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~--d 553 (738)
T PLN02529 491 AQRFENTDPST-------LLHRVLSVLRGIYNPK--------GINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGS--D 553 (738)
T ss_pred hHHHhcCCHHH-------HHHHHHHHHHHHhCcc--------ccccCCceEEEEccCCcCCCCCCCcccCCCCCchh--H
Confidence 45566666665 8999999999999853 12467899999999999999999999999887653 6
Q ss_pred hHhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 134 AADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 134 ~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
++.|++|+.+ |||||||||+..|+||||||++||+|||++|++.+
T Consensus 554 ~~~La~pv~g-----rL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l 598 (738)
T PLN02529 554 YDILAESVSG-----RLFFAGEATTRQYPATMHGAFLSGLREASRILHVA 598 (738)
T ss_pred HHHHhCCCCC-----CEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHH
Confidence 7889999763 99999999999999999999999999999999765
No 7
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.84 E-value=4.5e-21 Score=173.29 Aligned_cols=142 Identities=19% Similarity=0.234 Sum_probs=118.1
Q ss_pred cchhhhhhcc-cCCCCCCCCC---------CCCCceeeeeehhhhhhHHhhhhcccccCChhhhhccchHHHHHHHHHHH
Q psy13543 12 VDYVWWKHLM-YGGGGGGGGD---------APEKHKLIIVGAGAIAENRQKNGRNLSKSGQNTAKRSNHLNQTFCVASLS 81 (184)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~g~---------~~~~~~~~~~~~g~~a~~~~~~a~~l~~~~~~~~~~~~~~~~~~vl~~L~ 81 (184)
.+..||++.+ ++|.+.+|=. .....+.+++++ ....+.+..|+.+++++ +++.|+.+|.
T Consensus 295 f~rpFWee~~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~----~~~g~~A~~~~~~~~~~-------r~~~vl~~l~ 363 (450)
T COG1231 295 FSRPFWEEAGILGGESLTDLGLGFISYPSAPFADGPGVLLGS----YAFGDDALVIDALPEAE-------RRQKVLARLA 363 (450)
T ss_pred cCchhhhhcccCCceEeecCCcceEecCccccCCCceEEEee----eeccccceeEecCCHHH-------HHHHHHHhHh
Confidence 4678999999 9999888611 111333344552 23356789999999888 9999999999
Q ss_pred hhcCCcccccCCCCCCCCCCCeee-ccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeEEEccccccCc
Q psy13543 82 HLRTGEAQADNHGPKVTIPEPTRC-LHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEATSEH 160 (184)
Q Consensus 82 ~lFG~~~a~~~~~~~~~~p~p~~~-~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl~FAGE~Ts~~ 160 (184)
++||++ +.+ |.++ ...+|++|||+.|+|..+.+|+.+. .++.|.+|++ ||||||+|+++.
T Consensus 364 ~~~g~~-a~~----------~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~--~~~~l~~p~g------RIh~AgtEhas~ 424 (450)
T COG1231 364 KLFGDE-AAD----------PFDYGASVDWSKDPWTLGGTAAYPPGQRTK--LYPTLPAPHG------RIHFAGTEHASE 424 (450)
T ss_pred hhCChh-hcc----------ccccceeeecccCCcCCccccccCCccccc--ccccccCCCC------ceEEeeeccccc
Confidence 999976 343 5555 9999999999999888999999886 8999999998 999999999999
Q ss_pred CCccHHHHHHHHHHHHHHHHHhc
Q psy13543 161 QYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 161 ~~G~veGA~~SG~raA~~Il~~l 183 (184)
+.|||+||++||+|||.+|.+.+
T Consensus 425 ~~Gw~eGAi~Sg~~AA~ei~~~l 447 (450)
T COG1231 425 FGGWLEGAIRSGQRAAAEIHALL 447 (450)
T ss_pred ccchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 8
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.82 E-value=3e-20 Score=179.02 Aligned_cols=109 Identities=24% Similarity=0.369 Sum_probs=94.0
Q ss_pred hcccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccc
Q psy13543 54 GRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTS 133 (184)
Q Consensus 54 a~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~ 133 (184)
+..+..+++++ +++.++.+|+++||+. . ..+|+|+.+.+++|.+|||++|+|+++.+|+++. +
T Consensus 571 A~~~e~lsdeE-------~v~~vL~~Lr~ifgp~-~-------~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~--~ 633 (808)
T PLN02328 571 AVKFETLSPVE-------SVKRVLQILRGIFHPK-G-------IVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGD--D 633 (808)
T ss_pred hHHHhcCCHHH-------HHHHHHHHHHHHhCcc-c-------ccccCcceEEEecCCCCCCcCCCCCCCCCCCchh--H
Confidence 55566666655 8999999999999853 0 1356899999999999999999999999998764 7
Q ss_pred hHhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 134 AADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 134 ~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
++.|++|+.+ +|||||||||+..++||||||++||+|||++|++.+
T Consensus 634 ~~~LaePv~~----GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~ 679 (808)
T PLN02328 634 YDILAESVGD----GRVFFAGEATNKQYPATMHGAFLSGMREAANILRVA 679 (808)
T ss_pred HHHHhccCCC----CCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHH
Confidence 8899999853 499999999999999999999999999999999864
No 9
>KOG0685|consensus
Probab=99.76 E-value=9.7e-19 Score=158.82 Aligned_cols=112 Identities=38% Similarity=0.646 Sum_probs=96.2
Q ss_pred hhhcccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccc
Q psy13543 52 KNGRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLN 131 (184)
Q Consensus 52 ~~a~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~ 131 (184)
..++.+..+++++ +.+.++..|+++.++. ++|+|+++..++|.+|||+||||||.++++...
T Consensus 377 ~~~~~me~lsdEe-------v~e~~~~~lr~fl~n~----------~iP~p~kilRs~W~snp~frGSYSY~svgs~~~- 438 (498)
T KOG0685|consen 377 REARHMETLSDEE-------VLEGLTKLLRKFLKNP----------EIPKPKKILRSQWISNPFFRGSYSYRSVGSDGS- 438 (498)
T ss_pred CcceehhhCCHHH-------HHHHHHHHHHHhcCCC----------CCCCchhhhhhcccCCCccCceeeEeecccccc-
Confidence 3467777777766 9999999999999853 699999999999999999999999999998765
Q ss_pred cchHhhcCccC--CCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHh
Q psy13543 132 TSAADLGAPVS--NGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTL 182 (184)
Q Consensus 132 ~~~~~L~~P~~--~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~ 182 (184)
+...++.|+. +..++++|.||||||+..++.|+|||++||.|+|++|+..
T Consensus 439 -d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~ 490 (498)
T KOG0685|consen 439 -DTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEH 490 (498)
T ss_pred -ccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHH
Confidence 5555666654 4457889999999999999999999999999999999863
No 10
>KOG0029|consensus
Probab=99.76 E-value=2.5e-18 Score=158.74 Aligned_cols=141 Identities=28% Similarity=0.427 Sum_probs=110.0
Q ss_pred cchhhh-hhcccCCCCCCC----C------CCC-CCc-eeeeeehhhhhhHHhhhhcccccCChhhhhccchHHHHHHHH
Q psy13543 12 VDYVWW-KHLMYGGGGGGG----G------DAP-EKH-KLIIVGAGAIAENRQKNGRNLSKSGQNTAKRSNHLNQTFCVA 78 (184)
Q Consensus 12 ~~~~~~-~~~~~~~~~~~~----g------~~~-~~~-~~~~~~~g~~a~~~~~~a~~l~~~~~~~~~~~~~~~~~~vl~ 78 (184)
-+.+|| ++..|-|-+--. | ..| -.+ .+.++..|.. ++.+...+.++ +++.++.
T Consensus 306 F~~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~-------a~~~~~~~~~~-------~~~~~~~ 371 (501)
T KOG0029|consen 306 FPRVFWDQDIDFFGIVPETSVLRGLFTFYDCKPVAGHPVLMSVVVGEA-------AERVETLSDSE-------IVKKAMK 371 (501)
T ss_pred eccccCCCCcCeEEEccccccccchhhhhhcCccCCCCeEEEEehhhh-------hHHHhcCCHHH-------HHHHHHH
Confidence 478999 788777544332 2 111 111 2333333333 44555555555 9999999
Q ss_pred HHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeEEEcccccc
Q psy13543 79 SLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEATS 158 (184)
Q Consensus 79 ~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl~FAGE~Ts 158 (184)
+|+++|+.. .+|.|+++.+++|+.|+++.|+|++++++.... +++.+++|+.+ |||||||+|+
T Consensus 372 ~l~k~f~~~----------~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~--~y~~l~~pi~~-----~~ffage~t~ 434 (501)
T KOG0029|consen 372 LLRKVFGSE----------EVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGD--DYDRLAEPIKN-----RVFFAGEATS 434 (501)
T ss_pred HHHHHhccC----------cCCCccceeeeeecccccCCccccccCCCCChh--HHHHHhccccC-----cEEecchhhc
Confidence 999999842 467899999999999999999999999998764 78999999994 8999999999
Q ss_pred CcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 159 EHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 159 ~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
..+.||||||+.||.|+|..|+..+
T Consensus 435 ~~~~~tm~GA~~sG~~~a~~i~~~~ 459 (501)
T KOG0029|consen 435 RKYPGTMHGAYLSGLRAASDILDSL 459 (501)
T ss_pred ccCCCchHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999998754
No 11
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.55 E-value=1.7e-14 Score=123.58 Aligned_cols=102 Identities=27% Similarity=0.429 Sum_probs=87.1
Q ss_pred cccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccch
Q psy13543 55 RNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSA 134 (184)
Q Consensus 55 ~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~ 134 (184)
..+...+.++ +++.++++|.++|+.. .+|+|+++.+++|..++|+.++|++..++... ...
T Consensus 349 ~~~~~~~~e~-------~~~~~~~~L~~~~~~~----------~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~ 409 (450)
T PF01593_consen 349 PEWDDLSDEE-------ILERVLDDLRKILPGA----------SIPDPIDITVTRWSRDPYPRGSYSYFPPGQSS--QFR 409 (450)
T ss_dssp HHHTTSCHHH-------HHHHHHHHHHHHHTTG----------GGGEESEEEEEECTTSTTTSSSCECHCTTHHH--HHH
T ss_pred chhcccchhh-------hHHHHHHHhhhccccc----------cccccccccccccccccccccccccccccccc--ccc
Confidence 4555556555 8999999999999852 24468899999999999999999999999873 278
Q ss_pred HhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHH
Q psy13543 135 ADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRIL 180 (184)
Q Consensus 135 ~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il 180 (184)
+.++.|+. ++|||||++|+..+.|+|+||+.||++||++||
T Consensus 410 ~~~~~~~~-----~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 410 PALRTPID-----PGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp HHHHSCBT-----TTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred ccccCCcc-----eEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 88999995 289999999999988999999999999999997
No 12
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.35 E-value=1.2e-12 Score=117.66 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeEE
Q psy13543 72 NQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLL 151 (184)
Q Consensus 72 ~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl~ 151 (184)
+++.++++|.++||.... ..++.++..++|.++||+. | ..+||.. . ..+.+++|++ +||
T Consensus 366 ~~~~v~~~L~~~~~~~~~---------~~~~~~~~~~~~~~~p~a~--~-~~~pg~~-~--~~~~~~~p~~------~l~ 424 (453)
T TIGR02731 366 IIDATMAELAKLFPNHIK---------ADSPAKILKYKVVKTPRSV--Y-KTTPGRQ-Q--YRPHQKTPIP------NFF 424 (453)
T ss_pred HHHHHHHHHHHhCCcccC---------CCCCceEEEEEEEECCCce--e-ccCCCCh-h--hCccccCccC------CEE
Confidence 999999999999985311 1147788889999999994 5 3567743 2 6678899987 899
Q ss_pred EccccccCcCCccHHHHHHHHHHHHHHHH
Q psy13543 152 FAGEATSEHQYSTVNGAVETGWREADRIL 180 (184)
Q Consensus 152 FAGE~Ts~~~~G~veGA~~SG~raA~~Il 180 (184)
|||++|+..|+|+||||++||++||++|.
T Consensus 425 ~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 425 LAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred EeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999873
No 13
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.07 E-value=3.2e-10 Score=99.30 Aligned_cols=85 Identities=21% Similarity=0.221 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeEE
Q psy13543 72 NQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLL 151 (184)
Q Consensus 72 ~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl~ 151 (184)
+++.++++|.++||... .++|+...+.+|.. +.|++ .|+... ..+.+..|++ +||
T Consensus 335 ~~~~~l~~l~~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~-~~g~~~---~~~~~~~~~~------~l~ 389 (419)
T TIGR03467 335 LADRIVAELRRAFPRVA----------GAKPLWARVIKEKR-----ATFAA-TPGLNR---LRPGARTPWP------NLF 389 (419)
T ss_pred HHHHHHHHHHHhcCccc----------cCCccceEEEEccC-----Ccccc-CCcccc---cCCCCCCCcC------CEE
Confidence 99999999999998541 12366666677754 33433 345321 3445667876 899
Q ss_pred EccccccCcCCccHHHHHHHHHHHHHHHHH
Q psy13543 152 FAGEATSEHQYSTVNGAVETGWREADRILT 181 (184)
Q Consensus 152 FAGE~Ts~~~~G~veGA~~SG~raA~~Il~ 181 (184)
|||++|+..++++||||++||.+||++|++
T Consensus 390 ~aGd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 390 LAGDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred EecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 999999998899999999999999999974
No 14
>PLN02612 phytoene desaturase
Probab=99.03 E-value=3.7e-10 Score=105.68 Aligned_cols=103 Identities=18% Similarity=0.185 Sum_probs=70.6
Q ss_pred hcccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccc
Q psy13543 54 GRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTS 133 (184)
Q Consensus 54 a~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~ 133 (184)
+..|..+++++ +++.++++|.++||.....+ +.........+...|++. |.+ .|+... .
T Consensus 446 a~~~~~~sdee-------i~e~vl~~L~~lfp~~~~~~--------~~~~~i~~~~~v~~P~a~--~~~-~pg~~~---~ 504 (567)
T PLN02612 446 AEEWISRSDED-------IIDATMKELAKLFPDEISAD--------QSKAKILKYHVVKTPRSV--YKT-VPNCEP---C 504 (567)
T ss_pred ChhhhcCCHHH-------HHHHHHHHHHHHCCcccccc--------cCCceEEEEEEeccCCce--EEe-CCCCcc---c
Confidence 34566566555 99999999999998642210 001122223344455542 433 344322 3
Q ss_pred hHhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 134 AADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 134 ~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.+.++.|+. +|||||++|+..|+++|+||+.||++||++|++.+
T Consensus 505 rp~~~tPi~------~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~ 548 (567)
T PLN02612 505 RPLQRSPIE------GFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDY 548 (567)
T ss_pred CccccCccC------CEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 455678886 79999999999999999999999999999999765
No 15
>PRK07233 hypothetical protein; Provisional
Probab=98.66 E-value=3.8e-08 Score=86.90 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeE
Q psy13543 71 LNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVL 150 (184)
Q Consensus 71 ~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl 150 (184)
++++.+++.|.++|+.. .+......+|.+.+|+.+.| .||... ..+.+.+|+. +|
T Consensus 344 ~~~~~~~~~L~~~~p~~-------------~~~~~~~~~~~r~~~a~~~~---~~g~~~---~~~~~~~~~~------~l 398 (434)
T PRK07233 344 ELLDRFLSYLRKMFPDF-------------DRDDVRAVRISRAPYAQPIY---EPGYLD---KIPPYDTPIE------GL 398 (434)
T ss_pred HHHHHHHHHHHHhCCCC-------------ChhheeeEEEEEeccccccc---cCchhh---cCCCcccCcC------CE
Confidence 38999999999999843 12233444566667765544 455322 3455677775 89
Q ss_pred EEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 151 LFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 151 ~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
||||+.+...+.++|+||++||.+||++|++.+
T Consensus 399 ~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~ 431 (434)
T PRK07233 399 YLAGMSQIYPEDRSINGSVRAGRRVAREILEDR 431 (434)
T ss_pred EEeCCcccCCccCchhHHHHHHHHHHHHHhhhh
Confidence 999995555566799999999999999999865
No 16
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.39 E-value=1.1e-06 Score=79.48 Aligned_cols=96 Identities=9% Similarity=0.096 Sum_probs=66.9
Q ss_pred hcccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccc-c
Q psy13543 54 GRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLN-T 132 (184)
Q Consensus 54 a~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~-~ 132 (184)
+..+..+++++ +++.++++|+++||-. ++|+.+.+++|.. ++....++..... .
T Consensus 365 ~~~~~~~~dee-------~~~~~~~~L~~~lG~~------------~~p~~~~v~~W~~------a~P~y~~~~~~~~~~ 419 (463)
T PRK12416 365 YETIKNYSEEE-------LVRVALYDIEKSLGIK------------GEPEVVEVTNWKD------LMPKYHLEHNQAVQS 419 (463)
T ss_pred chhhhcCCHHH-------HHHHHHHHHHHHhCCC------------CCceEEEEEEccc------cCCCcCcCHHHHHHH
Confidence 44455566555 9999999999999853 2599999999975 2222233421100 0
Q ss_pred chHhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 133 SAADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 133 ~~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
..+.+..+.. +|||||+.++.. .|+||+.||+++|++|+..+
T Consensus 420 ~~~~l~~~~~------~l~~aG~~~~g~---~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 420 LQEKMMNLYP------NIYLAGASYYGV---GIGACIGNGKNTANEIIATL 461 (463)
T ss_pred HHHHHHhhCC------CeEEeccccccc---cHHHHHHHHHHHHHHHHHHh
Confidence 1123444444 899999998754 49999999999999999765
No 17
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.36 E-value=1.6e-06 Score=77.21 Aligned_cols=84 Identities=20% Similarity=0.246 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeE
Q psy13543 71 LNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVL 150 (184)
Q Consensus 71 ~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl 150 (184)
++++.++++|+++||.. .+|+.+.+++|.. +|+...++... ....+..++.. .++|
T Consensus 367 ~~~~~~~~~L~~~~g~~------------~~~~~~~~~rw~~------a~p~~~~~~~~---~~~~l~~~l~~---~~~l 422 (451)
T PRK11883 367 ELVAFVLADLSKVMGIT------------GDPEFTIVQRWKE------AMPQYGVGHIE---RVAELRAGLPH---YPGL 422 (451)
T ss_pred HHHHHHHHHHHHHhCCC------------CCceEEEEeecCc------cCCCCCccHHH---HHHHHHHhhhh---CCCE
Confidence 39999999999999842 1478899999984 46666777533 34445555431 1279
Q ss_pred EEccccccCcCCccHHHHHHHHHHHHHHHHH
Q psy13543 151 LFAGEATSEHQYSTVNGAVETGWREADRILT 181 (184)
Q Consensus 151 ~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~ 181 (184)
||||+.+. .+.|++|++||+++|++|++
T Consensus 423 ~~aG~~~~---g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 423 YVAGASFE---GVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred EEECcccC---CccHHHHHHHHHHHHHHHHh
Confidence 99999975 34699999999999999986
No 18
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.20 E-value=2.7e-06 Score=78.06 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCC
Q psy13543 69 NHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKP 148 (184)
Q Consensus 69 ~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~ 148 (184)
++++++.++++|.++|+.. .. .+++...+....+-- | ...||... ..+..+.|+.
T Consensus 388 ~~~l~~~~~~~L~~~~p~~-~~---------~~~~~~~v~~~~~a~-----~-~~~pg~~~---~~P~~~t~~~------ 442 (474)
T TIGR02732 388 NEEIAKRVDKQVRALFPSS-KN---------LKLTWSSVVKLAQSL-----Y-REAPGMDP---FRPDQKTPIS------ 442 (474)
T ss_pred HHHHHHHHHHHHHHhCccc-cC---------CceeEEEEEEecCce-----e-ccCCCCcc---cCCCCCCCCC------
Confidence 3449999999999999852 11 134444333332222 2 23455432 2344456655
Q ss_pred eEEEccccccCcCCccHHHHHHHHHHHHHHHH
Q psy13543 149 VLLFAGEATSEHQYSTVNGAVETGWREADRIL 180 (184)
Q Consensus 149 rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il 180 (184)
+||+||..|+..|+.+||||+.||.+||+.|+
T Consensus 443 ~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 443 NFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred CeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 79999999999999999999999999999874
No 19
>PLN02576 protoporphyrinogen oxidase
Probab=98.20 E-value=6.2e-06 Score=75.08 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=68.0
Q ss_pred hcccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccc
Q psy13543 54 GRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTS 133 (184)
Q Consensus 54 a~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~ 133 (184)
+..+...++++ +++.+++.|.+++|.. ..++|..+.+++|.. ++..+.+|... .
T Consensus 388 ~~~~~~~s~ee-------~~~~~~~~L~~~~g~~----------~~~~p~~~~~~~w~~------a~P~~~~g~~~---~ 441 (496)
T PLN02576 388 NTGIASASEEE-------LVEAVDRDLRKLLLKP----------GAPPPKVVGVRVWPK------AIPQYLLGHLD---V 441 (496)
T ss_pred CcccccCCHHH-------HHHHHHHHHHHHhCCC----------CCCCCcEEEEeEcCc------ccCCCCcCHHH---H
Confidence 34555555555 9999999999999853 123577788899973 45555555432 2
Q ss_pred hHhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 134 AADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 134 ~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
...+.+.+.. ...++|+|||+.++. ..|+||++||.++|++|+..+
T Consensus 442 ~~~~~~~l~~-~~~~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~ 487 (496)
T PLN02576 442 LEAAEKMEKD-LGLPGLFLGGNYRGG---VALGKCVESGYEAADLVISYL 487 (496)
T ss_pred HHHHHHHHHh-cCCCCEEEeccccCC---ccHHHHHHHHHHHHHHHHHHH
Confidence 2333332221 000389999999973 499999999999999998653
No 20
>PLN02487 zeta-carotene desaturase
Probab=98.07 E-value=1.2e-05 Score=75.76 Aligned_cols=89 Identities=18% Similarity=0.123 Sum_probs=62.5
Q ss_pred chHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCC
Q psy13543 69 NHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKP 148 (184)
Q Consensus 69 ~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~ 148 (184)
++++++.++++|.++|+... . .+++...+.. +-+..| ...||+.. .++..+.|+.
T Consensus 464 ~~ei~~~~~~~L~~~~p~~~-~---------~~v~~~~vv~-----~~~at~-~~~pg~~~---~RP~~~T~~~------ 518 (569)
T PLN02487 464 NDKIVEKVHKQVLELFPSSR-G---------LEVTWSSVVK-----IGQSLY-REAPGMDP---FRPDQKTPIS------ 518 (569)
T ss_pred HHHHHHHHHHHHHHhCcccc-c---------CceEEEEEEE-----ccCcee-ccCCCccc---cCCCCCCCCC------
Confidence 33499999999999997531 0 1244333333 334444 23455432 2355677776
Q ss_pred eEEEccccccCcCCccHHHHHHHHHHHHHHHHHh
Q psy13543 149 VLLFAGEATSEHQYSTVNGAVETGWREADRILTL 182 (184)
Q Consensus 149 rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~ 182 (184)
+||+||.-|+..|+.+||||+.||.+||+.|++.
T Consensus 519 nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~ 552 (569)
T PLN02487 519 NFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEA 552 (569)
T ss_pred CEEEeCcccccCCcchHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999864
No 21
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.67 E-value=0.0003 Score=63.19 Aligned_cols=93 Identities=12% Similarity=0.192 Sum_probs=67.3
Q ss_pred cccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccch
Q psy13543 55 RNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSA 134 (184)
Q Consensus 55 ~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~ 134 (184)
..+...++++ +++.+++.|.++||-. . +|+.+.+++|.. +|....+|... ..
T Consensus 365 ~~~~~~~~ee-------~~~~v~~~L~~~~gi~--~----------~p~~~~v~rw~~------a~P~~~~g~~~---~~ 416 (462)
T TIGR00562 365 ESIVDLSENE-------IINIVLRDLKKVLNIN--N----------EPEMLCVTRWHR------AIPQYHVGHDQ---RL 416 (462)
T ss_pred ccccCCCHHH-------HHHHHHHHHHHHhCCC--C----------CCcEEEEeEccc------cCCCCCCChHH---HH
Confidence 4444455544 9999999999999842 1 388899999973 56665666533 23
Q ss_pred Hh----hcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhcC
Q psy13543 135 AD----LGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLKD 184 (184)
Q Consensus 135 ~~----L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l~ 184 (184)
.. +..+.. +|++||..+. ...|++++.||.++|++|++.|+
T Consensus 417 ~~i~~~l~~~~~------~l~l~G~~~~---g~~i~~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 417 KEARELLESAYP------GVFLTGNSFE---GVGIPDCIDQGKAAASDVLTFLF 461 (462)
T ss_pred HHHHHHHHhhCC------CEEEeccccC---CCcHHHHHHHHHHHHHHHHHhhc
Confidence 33 223333 7999998865 34899999999999999998774
No 22
>PRK07208 hypothetical protein; Provisional
Probab=97.24 E-value=0.00053 Score=62.16 Aligned_cols=88 Identities=14% Similarity=0.050 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeE
Q psy13543 71 LNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVL 150 (184)
Q Consensus 71 ~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl 150 (184)
++++.+++.|.+++... . .+|+...+++|. .+|..+.++..........+.++.. +|
T Consensus 373 el~~~~~~~L~~l~~~~--~---------~~~~~~~v~r~~------~a~P~y~~~~~~~~~~~~~~~~~~~------~l 429 (479)
T PRK07208 373 DLIALAIQELARLGLIR--P---------ADVEDGFVVRVP------KAYPVYDGTYERNVEIIRDLLDHFP------NL 429 (479)
T ss_pred HHHHHHHHHHHHcCCCC--h---------hheeEEEEEEec------CcccCCCchHHHHHHHHHHHHHhcC------Cc
Confidence 38999999999984211 1 147777777763 4455445554332011122335554 79
Q ss_pred EEccccccCcCCccHHHHHHHHHHHHHHHHHh
Q psy13543 151 LFAGEATSEHQYSTVNGAVETGWREADRILTL 182 (184)
Q Consensus 151 ~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~ 182 (184)
+|||++....+ -.|++|+.||.++|++|+..
T Consensus 430 ~laGr~~~~~~-~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 430 HLVGRNGMHRY-NNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred eeecccccccc-CChhHHHHHHHHHHHHHhcC
Confidence 99998876554 69999999999999999753
No 23
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.022 Score=53.16 Aligned_cols=87 Identities=20% Similarity=0.125 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCe
Q psy13543 70 HLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPV 149 (184)
Q Consensus 70 ~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~r 149 (184)
+.+...++.++..+|++.... . -|++.--+.-+-....||... .++.-..|+. +
T Consensus 376 ~~~~a~~e~~~~~~vP~~~~a-----------~------~~~~~i~~~q~~~~~~pgs~~---~rP~~~Tpv~------N 429 (485)
T COG3349 376 EAIVATFEKELYELVPSLAEA-----------K------LKSSVLVNQQSLYGLAPGSYH---YRPEQKTPIP------N 429 (485)
T ss_pred hhHHHHHHHHhhhcCCchhcc-----------c------ccccceeccccccccCCCccc---cCCCCCCCcc------c
Confidence 348888999999888765221 1 333333333344455666544 5666777777 7
Q ss_pred EEEccccccCcCCccHHHHHHHHHHHHHHHHHh
Q psy13543 150 LLFAGEATSEHQYSTVNGAVETGWREADRILTL 182 (184)
Q Consensus 150 l~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~ 182 (184)
+++||+-+-..+.++||||..||.+||+.|+..
T Consensus 430 ~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~ 462 (485)
T COG3349 430 LLLAGDYTKQPYLGSMEGATLSGLLAANAILDN 462 (485)
T ss_pred hhhccceeecCCcCccchhhhhHHHHHHHHHHh
Confidence 999999999999999999999999999999854
No 24
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.38 E-value=0.031 Score=49.05 Aligned_cols=80 Identities=23% Similarity=0.215 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeEE
Q psy13543 72 NQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLL 151 (184)
Q Consensus 72 ~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl~ 151 (184)
.+.........++++ -+|+|.-...+.|. |+. |...-. .....+.+.. +|+
T Consensus 252 ~i~~l~aA~~~~~~~-----------~~~~p~~s~~H~Wr--------YA~--P~~~~~--~~~L~ad~~~------~l~ 302 (331)
T COG3380 252 VIVALRAAAQELDGD-----------RLPEPDWSDAHRWR--------YAI--PNDAVA--GPPLDADREL------PLY 302 (331)
T ss_pred HHHHHHHhhhhccCC-----------CCCcchHHHhhccc--------ccc--cccccc--CCccccCCCC------cee
Confidence 444444445556653 35678888888883 332 222110 1111224443 799
Q ss_pred EccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 152 FAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 152 FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
|+|.-++. |-+|||++||..+|++|+..|
T Consensus 303 ~cGDwc~G---grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 303 ACGDWCAG---GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred eecccccC---cchhHHHhccHHHHHHHHhcC
Confidence 99999886 999999999999999999865
No 25
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=93.03 E-value=0.3 Score=44.86 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeE
Q psy13543 71 LNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVL 150 (184)
Q Consensus 71 ~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl 150 (184)
...+.++++|.++|++-...-. ...+-.|..+. ++. -...|+|-...-.........+..+.|+. +|
T Consensus 395 ~~~~~il~~l~~~~p~l~~~I~---~~~~~TP~t~~--r~~--~~~~G~~G~~~~~~~~~~~~~~~~~t~i~------gL 461 (493)
T TIGR02730 395 ADAERIIDRLEKIFPGLDSAID---YKEVGTPRTHR--RFL--GRDSGTYGPIPRRTLPGLLPMPFNRTAIP------GL 461 (493)
T ss_pred HHHHHHHHHHHHHCCChhhcEE---EEEeeCchhHH--HHh--CCCCcccCCcccccccccccCCCCCCCCC------Ce
Confidence 3788899999999875311100 00112233322 111 12245552111110000000012356666 79
Q ss_pred EEccccccCcCCccHHHHHHHHHHHHHHHHHhcC
Q psy13543 151 LFAGEATSEHQYSTVNGAVETGWREADRILTLKD 184 (184)
Q Consensus 151 ~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l~ 184 (184)
|+||..|.+ .+-+.|++.||+.+|+.|++.++
T Consensus 462 yl~G~~~~p--G~Gv~g~~~sG~~~a~~i~~~~~ 493 (493)
T TIGR02730 462 YCVGDSCFP--GQGLNAVAFSGFACAHRVAADLG 493 (493)
T ss_pred EEecCcCCC--CCCHHHHHHHHHHHHHHHHhhcC
Confidence 999988854 35889999999999999998653
No 26
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=87.61 E-value=1.2 Score=40.77 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=28.3
Q ss_pred eEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 149 VLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 149 rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+|||+|..|.+ .+-|.|++.||..+|++|++.+
T Consensus 460 gLyl~G~~~~p--G~Gv~g~~~sg~~~a~~il~~~ 492 (502)
T TIGR02734 460 NLYLVGAGTHP--GAGVPGVLGSAKATAKLMLGDL 492 (502)
T ss_pred CEEEeCCCCCC--CCCHHHHHHHHHHHHHHHHhhc
Confidence 79999998854 2578999999999999998754
No 27
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=85.74 E-value=2.1 Score=39.11 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=30.5
Q ss_pred cCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHh
Q psy13543 138 GAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTL 182 (184)
Q Consensus 138 ~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~ 182 (184)
+.|+. +|||+|..|.+. +-+-|++.||+.+|++|++.
T Consensus 455 ~t~i~------gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 455 RTPVK------GLWLCGDSIHPG--EGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred CCCCC------CeEEecCccCCC--CcHHHHHHHHHHHHHHHhhc
Confidence 45665 799999998652 47889999999999999864
No 28
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=81.79 E-value=5.9 Score=36.78 Aligned_cols=86 Identities=12% Similarity=0.119 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCC
Q psy13543 69 NHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKP 148 (184)
Q Consensus 69 ~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~ 148 (184)
|+++++.+++.|.++|+-. .+|+.+.+++|. .++..+.+|... ....++..+.. .- +
T Consensus 358 dee~~~~~l~~L~~~~~~~------------~~~~~~~v~r~~------~~~PqY~vG~~~---~~~~ir~~l~~-~y-~ 414 (444)
T COG1232 358 DEELVAAVLDDLKKLGGIN------------GDPVFVEVTRWK------YAMPQYEVGHLD---RLEPIRAALKG-AY-P 414 (444)
T ss_pred HHHHHHHHHHHHHHHcCcC------------cchhheeeeecc------ccCCccchhHHH---HHHHHHHhhcc-cc-C
Confidence 3449999999999999853 147788888884 456666777543 34445555541 00 2
Q ss_pred eEEEccccccCcCCccHHHHHHHHHHHHHHHH
Q psy13543 149 VLLFAGEATSEHQYSTVNGAVETGWREADRIL 180 (184)
Q Consensus 149 rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il 180 (184)
+|+.+|..-.. =.+...+.+|..||++|+
T Consensus 415 gi~~~G~~~~g---~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 415 GIKSVGRYGEG---VGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred CeEEeccCCCC---CCchHHHHHHHHHHHHhh
Confidence 67777754332 267888889999998886
No 29
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=70.93 E-value=5.3 Score=36.15 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=31.2
Q ss_pred CeEEEccccccCcC--Cc-cHHHHHHHHHHHHHHHHHhcC
Q psy13543 148 PVLLFAGEATSEHQ--YS-TVNGAVETGWREADRILTLKD 184 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~--~G-~veGA~~SG~raA~~Il~~l~ 184 (184)
+.||||||-..-.. .| -++-||.||..|+..|...|.
T Consensus 337 pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~~ 376 (376)
T TIGR03862 337 PGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWLE 376 (376)
T ss_pred CCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 48999999988763 35 699999999999999987763
No 30
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=56.42 E-value=14 Score=30.54 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=30.0
Q ss_pred CCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 146 GKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 146 ~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+.++||.+|..++. .+..+.-|+..|+.||..|.+.|
T Consensus 264 ~~~~vya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 264 SVPGVFAAGDVRDK-GYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred CCCCEEEeecccCc-chhhhhhhhhhHHHHHHHHHhhC
Confidence 34589999998874 34667889999999999998765
No 31
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=44.38 E-value=23 Score=32.28 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=24.0
Q ss_pred CeEEEccccccCcC--Cc-cHHHHHHHHHHHHH
Q psy13543 148 PVLLFAGEATSEHQ--YS-TVNGAVETGWREAD 177 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~--~G-~veGA~~SG~raA~ 177 (184)
+.|||+||-..-.. .| -++-||.||..|++
T Consensus 376 ~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 376 PGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp TTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 37999999988763 35 49999999999986
No 32
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=42.94 E-value=38 Score=31.03 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=29.5
Q ss_pred CCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 146 GKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 146 ~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+.+.||-+|+.+.. ...+..|+..|.+||..|.+.|
T Consensus 429 s~~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L 464 (471)
T PRK12810 429 SNPKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYL 464 (471)
T ss_pred CCCCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHH
Confidence 34579999998763 3478899999999999998876
No 33
>PRK12831 putative oxidoreductase; Provisional
Probab=40.83 E-value=40 Score=30.98 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=29.7
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.+.||-+|..+.. +..+.-|+..|.+||..|.+.|
T Consensus 426 ~pgVfAaGD~~~g--~~~v~~Ai~~G~~AA~~I~~~L 460 (464)
T PRK12831 426 KEGVFAGGDAVTG--AATVILAMGAGKKAAKAIDEYL 460 (464)
T ss_pred CCCEEEeCCCCCC--chHHHHHHHHHHHHHHHHHHHh
Confidence 4589999998753 5688999999999999998876
No 34
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=39.59 E-value=46 Score=31.94 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=30.3
Q ss_pred CCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhcC
Q psy13543 146 GKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLKD 184 (184)
Q Consensus 146 ~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l~ 184 (184)
+.+.||-+|.-+. .+..+.-|+..|++||..|.+.|.
T Consensus 616 s~~gVfAaGD~~~--g~~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 616 SNPKIFAGGDAVR--GADLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred CCCCEEEcCCcCC--CCcHHHHHHHHHHHHHHHHHHHhC
Confidence 3457999999864 356889999999999999998873
No 35
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=39.25 E-value=35 Score=28.84 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=28.0
Q ss_pred CeEEEccccccCcCC----c-cHHHHHHHHHHHHHHHHHhcC
Q psy13543 148 PVLLFAGEATSEHQY----S-TVNGAVETGWREADRILTLKD 184 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~~----G-~veGA~~SG~raA~~Il~~l~ 184 (184)
|.|+.+|=+.+..+. | +.-|=+.||++||+.|++.|+
T Consensus 214 ~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 214 PGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred CCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhh
Confidence 579999977776542 4 445567799999999998874
No 36
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=38.23 E-value=47 Score=30.49 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=45.9
Q ss_pred eeccccCCCCCCCCCCCCCCCCCccccccchH--hhcCccCCCCCCCeEEEccccccCcC---CccHHH-HHHHHHHHHH
Q psy13543 104 RCLHSSWGTNPHFRGSYSCRSLTTERLNTSAA--DLGAPVSNGQGKPVLLFAGEATSEHQ---YSTVNG-AVETGWREAD 177 (184)
Q Consensus 104 ~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~--~L~~P~~~~~~~~rl~FAGE~Ts~~~---~G~veG-A~~SG~raA~ 177 (184)
.-...+|....|.. .-.+..-|..++..-++ .-.+++. ++||.+|.-..... .|+=.| |+.||..||+
T Consensus 341 ~~~r~~w~~~~~~~-~~p~~~~GV~~d~~~~p~~~~g~~~~-----~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~ 414 (422)
T PRK05329 341 PADRADWYQRDFFA-PHPFLQFGVATDATLRPLDSQGGPVI-----ENLYAAGAVLGGYDPIREGCGSGVALATALHAAE 414 (422)
T ss_pred CCchhhhhhhhhcc-CCchhhcCceECCCcCcccCCCCeec-----cceEEeeehhcCCchHHhCCCchhHHHHHHHHHH
Confidence 34447899999883 45677777665311111 1122322 38999999887643 244444 8899999999
Q ss_pred HHHHh
Q psy13543 178 RILTL 182 (184)
Q Consensus 178 ~Il~~ 182 (184)
.|+..
T Consensus 415 ~~~~~ 419 (422)
T PRK05329 415 QIAEE 419 (422)
T ss_pred HHHHh
Confidence 98764
No 37
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=36.75 E-value=44 Score=28.29 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=28.1
Q ss_pred CeEEEccccccCcC----Cc-cHHHHHHHHHHHHHHHHHhcC
Q psy13543 148 PVLLFAGEATSEHQ----YS-TVNGAVETGWREADRILTLKD 184 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~----~G-~veGA~~SG~raA~~Il~~l~ 184 (184)
|.|+.+|=+.+..+ .| +.-|=+.||++||+.|++.|.
T Consensus 213 ~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 213 PNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred CCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 57999997777654 24 444557799999999999874
No 38
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=36.63 E-value=46 Score=31.90 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=30.1
Q ss_pred CCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhcC
Q psy13543 146 GKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLKD 184 (184)
Q Consensus 146 ~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l~ 184 (184)
+.+.||-+|.-+.. ...+.-|+..|++||..|...|.
T Consensus 599 s~~gVfA~GD~~~g--~~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 599 HLKKVFAGGDAVHG--ADLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred CCCCEEEcCCCCCC--chHHHHHHHHHHHHHHHHHHHHh
Confidence 34579999997753 56789999999999999998763
No 39
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=35.75 E-value=52 Score=29.94 Aligned_cols=35 Identities=26% Similarity=0.216 Sum_probs=29.2
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.+.||-+|.-+. .+..+.=|+..|.+||..|.+.|
T Consensus 415 ~~~VfA~GD~~~--g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 415 IPGVFAGGDIIL--GAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CCCEEEecCCCC--CcHHHHHHHHHHHHHHHHHHhhC
Confidence 458999999875 34688899999999999998765
No 40
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=33.95 E-value=58 Score=30.57 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=29.4
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.+.||-+|..+. .+.++.-|+..|.+||..|.+.|
T Consensus 409 ~~~Vfa~GD~~~--g~~~v~~Av~~G~~aA~~i~~~L 443 (564)
T PRK12771 409 RPGVFAGGDMVP--GPRTVTTAIGHGKKAARNIDAFL 443 (564)
T ss_pred CCCEEeccCcCC--CchHHHHHHHHHHHHHHHHHHHH
Confidence 457999999765 35789999999999999998766
No 41
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=33.21 E-value=36 Score=29.42 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=29.4
Q ss_pred CCeEEEccccccCcC----Cc-cHHHHHHHHHHHHHHHHHhcC
Q psy13543 147 KPVLLFAGEATSEHQ----YS-TVNGAVETGWREADRILTLKD 184 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~----~G-~veGA~~SG~raA~~Il~~l~ 184 (184)
-+.|++||=+++..+ .| +.-|=+.||+++|+.|++.|+
T Consensus 218 ~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 218 YPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred cCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 357999998887754 24 445567899999999998874
No 42
>KOG1276|consensus
Probab=31.44 E-value=2e+02 Score=27.24 Aligned_cols=83 Identities=13% Similarity=0.191 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHh-hcCccCCCCCCCeE
Q psy13543 72 NQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAAD-LGAPVSNGQGKPVL 150 (184)
Q Consensus 72 ~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~-L~~P~~~~~~~~rl 150 (184)
.++.+.+.|.+|.|-. . +|+...++-|. -|...+.+|.....+..+. +..--+ .+|
T Consensus 407 ~~~~v~~alq~~Lgi~--~----------~P~~~~v~l~~------~ciPqy~vGh~~~le~a~~~l~~~~g-----~~l 463 (491)
T KOG1276|consen 407 LVNAVTSALQKMLGIS--N----------KPVSVNVHLWK------NCIPQYTVGHDDVLEAAKSMLTDSPG-----LGL 463 (491)
T ss_pred HHHHHHHHHHHHhCCC--C----------Ccccccceehh------hcccceecchHHHHHHHHHHHHhCCC-----Cce
Confidence 8999999999999864 1 37666666553 2444445553321011111 222222 279
Q ss_pred EEccccccCcCCccHHHHHHHHHHHHHHHH
Q psy13543 151 LFAGEATSEHQYSTVNGAVETGWREADRIL 180 (184)
Q Consensus 151 ~FAGE~Ts~~~~G~veGA~~SG~raA~~Il 180 (184)
+.+|.+...- .|.=-++||.++|.+++
T Consensus 464 ~l~G~~y~Gv---~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 464 FLGGNHYGGV---SVGDCIESGRKTAVEVI 490 (491)
T ss_pred EeeccccCCC---ChhHHHHhhHHHHHhhc
Confidence 9999987763 45556777888887765
No 43
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=30.81 E-value=73 Score=30.07 Aligned_cols=34 Identities=21% Similarity=0.059 Sum_probs=26.1
Q ss_pred eEEEccccccCcCCc-------cHHHHHHHHHHHHHHHHHh
Q psy13543 149 VLLFAGEATSEHQYS-------TVNGAVETGWREADRILTL 182 (184)
Q Consensus 149 rl~FAGE~Ts~~~~G-------~veGA~~SG~raA~~Il~~ 182 (184)
.||-|||.+.....| .+-+|+-+|++|++.+.+.
T Consensus 355 GLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~ 395 (565)
T TIGR01816 355 GLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEY 395 (565)
T ss_pred CeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 799999987543333 6778899999999887653
No 44
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=30.24 E-value=77 Score=30.18 Aligned_cols=38 Identities=26% Similarity=0.173 Sum_probs=29.1
Q ss_pred CccCCCCCCCeEEEccccccCcCCc-------cHHHHHHHHHHHHHHHHHh
Q psy13543 139 APVSNGQGKPVLLFAGEATSEHQYS-------TVNGAVETGWREADRILTL 182 (184)
Q Consensus 139 ~P~~~~~~~~rl~FAGE~Ts~~~~G-------~veGA~~SG~raA~~Il~~ 182 (184)
+++. .||-|||.+.....| .+-.|+-.|++|++.+.+.
T Consensus 383 t~I~------GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~ 427 (598)
T PRK09078 383 AVVP------GLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEV 427 (598)
T ss_pred CccC------ceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHh
Confidence 4676 799999987643333 7888999999999887654
No 45
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=30.02 E-value=70 Score=28.88 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=29.5
Q ss_pred CeEEEccccccCcCC-----ccHHHHHHHHHHHHHHHHHhc
Q psy13543 148 PVLLFAGEATSEHQY-----STVNGAVETGWREADRILTLK 183 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~~-----G~veGA~~SG~raA~~Il~~l 183 (184)
++++++|++-..-.+ .=|.-|+.||..||+.|++.+
T Consensus 295 ~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~ 335 (428)
T PRK10157 295 DGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAM 335 (428)
T ss_pred CCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 589999999876543 457779999999999998765
No 46
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=29.55 E-value=77 Score=28.76 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=28.7
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.+.||-+|..+.. ...+.-|+..|..||..|.+.|
T Consensus 417 ~~~VfA~GD~~~~--~~~~~~A~~~G~~aA~~I~~~l 451 (457)
T PRK11749 417 LPGVFAGGDIVTG--AATVVWAVGDGKDAAEAIHEYL 451 (457)
T ss_pred CCCEEEeCCcCCC--chHHHHHHHHHHHHHHHHHHHH
Confidence 4579999998742 4578889999999999998876
No 47
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=28.61 E-value=52 Score=30.16 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=25.8
Q ss_pred CCCCCeEEEccccccCcCCccHHHH---HHHHHHHHHHHH
Q psy13543 144 GQGKPVLLFAGEATSEHQYSTVNGA---VETGWREADRIL 180 (184)
Q Consensus 144 ~~~~~rl~FAGE~Ts~~~~G~veGA---~~SG~raA~~Il 180 (184)
.+.+++|||||--|-.+ |||+-| +..|+-||+..+
T Consensus 331 lk~~p~l~fAGQitG~E--GYveSaA~Gllag~naa~~~~ 368 (439)
T COG1206 331 LKKRPNLFFAGQITGVE--GYVESAASGLLAGINAARLAL 368 (439)
T ss_pred cccCCCcEEeeeeecch--hhhHHhhhhHHHhhHHHHHhc
Confidence 45678999999998876 677654 667777777654
No 48
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=26.85 E-value=85 Score=28.99 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=28.7
Q ss_pred CCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 146 GKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 146 ~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+.+.||-+|.-+.. ...+.-|+..|++||..|.+.|
T Consensus 443 s~~gVfAaGD~~~g--~~~~~~Av~~G~~AA~~i~~~L 478 (485)
T TIGR01317 443 SIPGVFAAGDCRRG--QSLIVWAINEGRKAAAAVDRYL 478 (485)
T ss_pred CCCCEEEeeccCCC--cHHHHHHHHHHHHHHHHHHHHH
Confidence 34579999987643 4567789999999999998876
No 49
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=26.45 E-value=1e+02 Score=28.34 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=28.9
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.+.||-+|.-+.. ...+.-|+..|.+||..|.+.|
T Consensus 431 ~~gVfa~GD~~~~--~~~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 431 NPKIFAGGDAVRG--ADLVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred CCCEEEECCcCCC--ccHHHHHHHHHHHHHHHHHHHh
Confidence 3579999998753 3467899999999999999876
No 50
>PLN02661 Putative thiazole synthesis
Probab=25.91 E-value=76 Score=28.72 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=28.5
Q ss_pred CeEEEccccccCcC----Cc-cHHHHHHHHHHHHHHHHHhcC
Q psy13543 148 PVLLFAGEATSEHQ----YS-TVNGAVETGWREADRILTLKD 184 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~----~G-~veGA~~SG~raA~~Il~~l~ 184 (184)
|.|+.+|=+.+..+ .| +.-|=+.||+++|+.|++.|+
T Consensus 287 pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 287 PGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALG 328 (357)
T ss_pred CCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHc
Confidence 57999997777654 24 445557899999999998874
No 51
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=25.74 E-value=1e+02 Score=29.74 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=29.5
Q ss_pred CCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 146 GKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 146 ~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+.+.||-+|.-+.. +..+.-|+..|..||..|.+.|
T Consensus 465 s~pgVfA~GDv~~g--~~~v~~Ai~~G~~AA~~I~~~L 500 (652)
T PRK12814 465 SVAGVFAGGDCVTG--ADIAINAVEQGKRAAHAIDLFL 500 (652)
T ss_pred CCCCEEEcCCcCCC--chHHHHHHHHHHHHHHHHHHHH
Confidence 34589999998753 5678899999999999998776
No 52
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=25.46 E-value=87 Score=31.82 Aligned_cols=36 Identities=22% Similarity=0.098 Sum_probs=29.9
Q ss_pred CCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 146 GKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 146 ~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+.+.||-+|..+.. ..++.=|+..|++||..|.+.|
T Consensus 591 s~pgVFAaGD~~~G--~~~vv~Ai~eGr~AA~~I~~~L 626 (944)
T PRK12779 591 SIKGVYSGGDAARG--GSTAIRAAGDGQAAAKEIVGEI 626 (944)
T ss_pred CCCCEEEEEcCCCC--hHHHHHHHHHHHHHHHHHHHHh
Confidence 44689999998753 4588999999999999998876
No 53
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=24.91 E-value=79 Score=29.21 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=45.8
Q ss_pred eeccccCCCCCCCCCCCC--CCCCCcc-ccccchH-hhcCccCCCCCCCeEEEccccccCcC--Cc-cHHHHHHHHHHHH
Q psy13543 104 RCLHSSWGTNPHFRGSYS--CRSLTTE-RLNTSAA-DLGAPVSNGQGKPVLLFAGEATSEHQ--YS-TVNGAVETGWREA 176 (184)
Q Consensus 104 ~~~~~~W~~Dp~s~Gsys--~~~~g~~-~~~~~~~-~L~~P~~~~~~~~rl~FAGE~Ts~~~--~G-~veGA~~SG~raA 176 (184)
.-.+++|.=-+-=..+|. .++-|.- ....+.. -.++-+. .||||||=..-+. .| -++=|+.||..|+
T Consensus 327 ~~~ik~~~i~~~Gt~~~~~A~VT~GGV~~~eid~kTmesk~vP------GLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag 400 (408)
T COG2081 327 AAALKAWPITPNGTEPYREAEVTAGGVDTKEIDSKTMESKKVP------GLYFAGEVLDVTGWTGGYNFQWAWASGWAAG 400 (408)
T ss_pred HHHHhcCeeeccCCcccceeEEecCceehhhcCHHHHHhhcCC------CcEEEEEEEEeccCCCcHHHHHHHHHHHHHH
Confidence 445677765555445553 4444431 1111222 2344454 7999999887662 24 5788999999999
Q ss_pred HHHHHhc
Q psy13543 177 DRILTLK 183 (184)
Q Consensus 177 ~~Il~~l 183 (184)
+-+++.+
T Consensus 401 ~~~~~~~ 407 (408)
T COG2081 401 QGAAAWL 407 (408)
T ss_pred Hhhhhhc
Confidence 9887764
No 54
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.64 E-value=1.1e+02 Score=28.88 Aligned_cols=34 Identities=18% Similarity=0.040 Sum_probs=26.0
Q ss_pred eEEEccccccCcCCc-------cHHHHHHHHHHHHHHHHHh
Q psy13543 149 VLLFAGEATSEHQYS-------TVNGAVETGWREADRILTL 182 (184)
Q Consensus 149 rl~FAGE~Ts~~~~G-------~veGA~~SG~raA~~Il~~ 182 (184)
.||-|||.++....| .+-+|+-.|++|++.+...
T Consensus 377 GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~ 417 (583)
T PRK08205 377 GLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEY 417 (583)
T ss_pred CeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHH
Confidence 799999988644334 6777888999998887643
No 55
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=24.53 E-value=99 Score=30.20 Aligned_cols=36 Identities=25% Similarity=0.161 Sum_probs=29.9
Q ss_pred CCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 146 GKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 146 ~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+.+.||-+|.-+.. +..+.-|+..|.+||..|.+.|
T Consensus 714 s~~gVfA~GD~~~g--~~~vv~Av~~G~~AA~~I~~~L 749 (752)
T PRK12778 714 SIPGIYAGGDIVRG--GATVILAMGDGKRAAAAIDEYL 749 (752)
T ss_pred CCCCEEEeCCccCC--cHHHHHHHHHHHHHHHHHHHHh
Confidence 44589999988753 4688999999999999998876
No 56
>PRK10015 oxidoreductase; Provisional
Probab=24.24 E-value=97 Score=28.05 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=29.1
Q ss_pred CeEEEccccccCcC-----CccHHHHHHHHHHHHHHHHHhc
Q psy13543 148 PVLLFAGEATSEHQ-----YSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~-----~G~veGA~~SG~raA~~Il~~l 183 (184)
+++..+|++-..-. ..=|.-|+.||+.||+.|++.+
T Consensus 295 ~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~ 335 (429)
T PRK10015 295 DGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAK 335 (429)
T ss_pred CCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHH
Confidence 38999999987753 2456779999999999998764
No 57
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=24.16 E-value=29 Score=16.20 Aligned_cols=6 Identities=33% Similarity=1.044 Sum_probs=4.8
Q ss_pred chhhhh
Q psy13543 13 DYVWWK 18 (184)
Q Consensus 13 ~~~~~~ 18 (184)
..||||
T Consensus 4 ~~CFWK 9 (12)
T PF02083_consen 4 SECFWK 9 (12)
T ss_pred cchhhh
Confidence 469997
No 58
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.01 E-value=1.1e+02 Score=28.83 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=28.1
Q ss_pred cCccCCCCCCCeEEEccccccCcCC-------ccHHHHHHHHHHHHHHHHHh
Q psy13543 138 GAPVSNGQGKPVLLFAGEATSEHQY-------STVNGAVETGWREADRILTL 182 (184)
Q Consensus 138 ~~P~~~~~~~~rl~FAGE~Ts~~~~-------G~veGA~~SG~raA~~Il~~ 182 (184)
.+|+. .||-|||.+....+ ..+-+|+-+|++|++.+.+.
T Consensus 368 g~~I~------GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~ 413 (577)
T PRK06069 368 GEWVR------GLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEY 413 (577)
T ss_pred CCEeC------CeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 35676 79999998763322 24677888999998887653
No 59
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.69 E-value=1.1e+02 Score=29.00 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=26.9
Q ss_pred eEEEccccccCcCCc-------cHHHHHHHHHHHHHHHHHh
Q psy13543 149 VLLFAGEATSEHQYS-------TVNGAVETGWREADRILTL 182 (184)
Q Consensus 149 rl~FAGE~Ts~~~~G-------~veGA~~SG~raA~~Il~~ 182 (184)
.||=|||.++....| .+-+++-.|++|++.+.+.
T Consensus 362 GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~ 402 (566)
T PRK06452 362 GLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQF 402 (566)
T ss_pred CeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 799999987644334 7888999999999887654
No 60
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=23.20 E-value=73 Score=28.50 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=23.9
Q ss_pred CeEEEccccccCcC--Cc-cHHHHHHHHHHHH
Q psy13543 148 PVLLFAGEATSEHQ--YS-TVNGAVETGWREA 176 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~--~G-~veGA~~SG~raA 176 (184)
+.||||||-+.-.. .| -++-|+.||..|+
T Consensus 368 ~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 368 PGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 37999999988763 34 6999999999886
No 61
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=22.98 E-value=1.1e+02 Score=28.53 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=23.2
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHh
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTL 182 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~ 182 (184)
.++|||||+-+-.+ ||. =|..+|..|+..+...
T Consensus 330 ~~~l~~AGqi~g~~--Gy~-ea~a~G~~Ag~n~~~~ 362 (436)
T PRK05335 330 RPNLFFAGQITGVE--GYV-ESAASGLLAGINAARL 362 (436)
T ss_pred CCCEEeeeeecCch--HHH-HHHHHHHHHHHHHHHH
Confidence 35899999998653 777 4666777776665543
No 62
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=22.47 E-value=1e+02 Score=26.93 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=27.8
Q ss_pred CCeEEEccccccCc--CCccHHHHHHHHHHHHHHHHH
Q psy13543 147 KPVLLFAGEATSEH--QYSTVNGAVETGWREADRILT 181 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~--~~G~veGA~~SG~raA~~Il~ 181 (184)
.++||.+|+-+... ..+++..|+++|+.+|+.|+.
T Consensus 265 ~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g 301 (377)
T PRK04965 265 APDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLG 301 (377)
T ss_pred CCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcC
Confidence 45899999987653 236788899999999998863
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=21.72 E-value=1.3e+02 Score=30.81 Aligned_cols=36 Identities=28% Similarity=0.261 Sum_probs=29.6
Q ss_pred CCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 146 GKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 146 ~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+.+.||-+|.-+. .+.++.-|+..|++||..|.+.|
T Consensus 719 s~pgVFAaGDv~~--G~~~vv~Ai~~Gr~AA~~I~~~L 754 (1006)
T PRK12775 719 NLPGVFAGGDIVT--GGATVILAMGAGRRAARSIATYL 754 (1006)
T ss_pred CCCCEEEecCcCC--CccHHHHHHHHHHHHHHHHHHHH
Confidence 3457999999874 35688999999999999998776
No 64
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=21.66 E-value=1.4e+02 Score=28.89 Aligned_cols=38 Identities=29% Similarity=0.282 Sum_probs=28.9
Q ss_pred CccCCCCCCCeEEEccccccCcCCc-------cHHHHHHHHHHHHHHHHHh
Q psy13543 139 APVSNGQGKPVLLFAGEATSEHQYS-------TVNGAVETGWREADRILTL 182 (184)
Q Consensus 139 ~P~~~~~~~~rl~FAGE~Ts~~~~G-------~veGA~~SG~raA~~Il~~ 182 (184)
.++. .||=|||.+.....| .+-.|+-.|++|++.+.+.
T Consensus 421 t~Ip------GLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~ 465 (635)
T PLN00128 421 AVVP------GLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEI 465 (635)
T ss_pred CccC------ceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 4676 799999987543333 7888999999999987653
No 65
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=21.23 E-value=1.6e+02 Score=25.64 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=29.1
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.++||-+|.-+.. +..+.-|+..|..+|..|...|
T Consensus 315 ~~~vyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 315 REGVFAAGDVVTG--PSKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred CCCEEEEcccccC--cchHHHHHHHHHHHHHHHHHHH
Confidence 3589999997753 4678899999999999998765
No 66
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=21.02 E-value=1.3e+02 Score=28.77 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=26.0
Q ss_pred eEEEccccccCcCCc-------cHHHHHHHHHHHHHHHHHh
Q psy13543 149 VLLFAGEATSEHQYS-------TVNGAVETGWREADRILTL 182 (184)
Q Consensus 149 rl~FAGE~Ts~~~~G-------~veGA~~SG~raA~~Il~~ 182 (184)
.||-|||.+....+| .+-+++-.|++|++.+.+.
T Consensus 404 GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~ 444 (617)
T PTZ00139 404 GLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEI 444 (617)
T ss_pred CceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 799999987543233 7788899999999887653
No 67
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=21.00 E-value=1.2e+02 Score=27.70 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=23.9
Q ss_pred CeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 148 PVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+.|||||.=+-. -||.|.|. +|.-|+..++..+
T Consensus 356 ~~lf~AGqi~G~--~Gy~eaaa-~G~~ag~na~~~~ 388 (392)
T PF01134_consen 356 PGLFFAGQINGT--EGYEEAAA-QGLIAGINAARRL 388 (392)
T ss_dssp BTEEE-GGGGTB---SHHHHHH-HHHHHHHHHHHHH
T ss_pred CCceECCCCcch--hHHHHHHH-HHHHHHHHHHHHH
Confidence 479999998877 58888776 7888877776543
No 68
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=20.63 E-value=1.6e+02 Score=25.89 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=29.4
Q ss_pred CeEEEccccccCcCC---ccHHHHHHHHHHHHHHHHHhc
Q psy13543 148 PVLLFAGEATSEHQY---STVNGAVETGWREADRILTLK 183 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~~---G~veGA~~SG~raA~~Il~~l 183 (184)
++++++|++...-.+ +=|.=|+.||..+|+.|.+.+
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l 302 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYL 302 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 479999998776544 578889999999999988765
Done!