Query psy13543
Match_columns 184
No_of_seqs 184 out of 1184
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 21:59:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13543.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13543hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e1m_C L-glutamate oxidase; L- 99.9 1.9E-23 6.5E-28 167.7 8.5 104 53-183 47-152 (181)
2 2z3y_A Lysine-specific histone 99.8 1.6E-20 5.4E-25 175.4 11.0 111 54-183 541-658 (662)
3 2xag_A Lysine-specific histone 99.8 3.1E-20 1E-24 178.9 12.5 111 54-183 712-829 (852)
4 3k7m_X 6-hydroxy-L-nicotine ox 99.8 2.7E-20 9.1E-25 162.2 9.7 87 75-182 339-425 (431)
5 4gut_A Lysine-specific histone 99.8 1.2E-20 4E-25 180.2 7.4 103 55-181 673-775 (776)
6 1rsg_A FMS1 protein; FAD bindi 99.8 7.5E-19 2.6E-23 158.2 8.5 103 74-183 399-507 (516)
7 2yg5_A Putrescine oxidase; oxi 99.7 4.4E-18 1.5E-22 149.3 8.8 103 55-183 348-451 (453)
8 1b37_A Protein (polyamine oxid 99.7 1.1E-17 3.9E-22 148.6 11.4 104 55-183 355-458 (472)
9 1s3e_A Amine oxidase [flavin-c 99.7 7E-18 2.4E-22 151.6 8.3 104 55-183 350-454 (520)
10 2iid_A L-amino-acid oxidase; f 99.7 8.4E-18 2.9E-22 149.7 7.8 106 54-183 378-484 (498)
11 2vvm_A Monoamine oxidase N; FA 99.7 2.4E-17 8.1E-22 146.7 8.6 92 72-183 394-485 (495)
12 2jae_A L-amino acid oxidase; o 99.5 1.8E-14 6.1E-19 127.9 8.4 103 55-183 377-485 (489)
13 3ayj_A Pro-enzyme of L-phenyla 99.2 2.7E-12 9.2E-17 121.9 4.1 101 72-183 566-679 (721)
14 1sez_A Protoporphyrinogen oxid 98.8 5.8E-09 2E-13 92.5 5.4 86 71-183 408-493 (504)
15 3lov_A Protoporphyrinogen oxid 98.6 4.6E-08 1.6E-12 86.0 5.4 95 55-183 370-465 (475)
16 3i6d_A Protoporphyrinogen oxid 98.6 2.7E-08 9.3E-13 86.5 3.4 95 55-183 373-468 (470)
17 3qj4_A Renalase; FAD/NAD(P)-bi 98.5 3E-07 1E-11 77.6 8.3 81 71-183 261-342 (342)
18 2ivd_A PPO, PPOX, protoporphyr 98.5 2E-07 7E-12 81.8 7.2 86 71-183 388-473 (478)
19 1yvv_A Amine oxidase, flavin-c 98.0 7.5E-06 2.6E-10 68.0 6.8 91 54-184 238-328 (336)
20 3ka7_A Oxidoreductase; structu 97.4 0.00021 7.1E-09 61.3 6.4 80 72-180 345-424 (425)
21 3nks_A Protoporphyrinogen oxid 97.3 0.00045 1.5E-08 60.2 6.9 87 70-182 387-473 (477)
22 3kkj_A Amine oxidase, flavin-c 97.2 0.00095 3.2E-08 50.4 6.9 80 72-184 249-328 (336)
23 2b9w_A Putative aminooxidase; 97.2 0.00023 8E-09 61.2 3.6 30 148-180 394-423 (424)
24 3nrn_A Uncharacterized protein 97.1 0.0013 4.3E-08 56.7 8.1 73 72-179 329-403 (421)
25 4gde_A UDP-galactopyranose mut 96.6 0.0015 5.1E-08 57.2 3.9 88 71-181 389-477 (513)
26 4dgk_A Phytoene dehydrogenase; 96.1 0.0046 1.6E-07 54.3 4.5 38 138-183 454-491 (501)
27 1v0j_A UDP-galactopyranose mut 93.0 0.021 7.1E-07 49.5 0.5 33 149-182 354-386 (399)
28 4dsg_A UDP-galactopyranose mut 89.4 0.18 6.2E-06 44.7 2.8 87 70-180 364-452 (484)
29 3fpz_A Thiazole biosynthetic e 84.5 0.35 1.2E-05 40.1 1.6 37 147-183 283-324 (326)
30 2cul_A Glucose-inhibited divis 78.3 2.5 8.4E-05 33.2 4.5 35 146-183 197-231 (232)
31 4a9w_A Monooxygenase; baeyer-v 75.5 2.4 8.1E-05 34.3 3.8 37 147-184 314-352 (357)
32 3fbs_A Oxidoreductase; structu 72.5 4.6 0.00016 31.7 4.7 35 147-183 257-291 (297)
33 2bi7_A UDP-galactopyranose mut 72.3 2.9 9.9E-05 35.7 3.7 35 148-183 336-370 (384)
34 2i0z_A NAD(FAD)-utilizing dehy 65.4 4.4 0.00015 35.1 3.4 39 138-182 401-442 (447)
35 3itj_A Thioredoxin reductase 1 64.7 9.3 0.00032 30.5 5.1 35 148-183 300-334 (338)
36 3f8d_A Thioredoxin reductase ( 64.4 8.9 0.0003 30.4 4.9 37 147-183 279-316 (323)
37 1i8t_A UDP-galactopyranose mut 63.1 6.5 0.00022 33.2 4.0 33 148-181 333-365 (367)
38 3r9u_A Thioredoxin reductase; 62.2 11 0.00036 29.9 4.9 36 147-183 276-311 (315)
39 1trb_A Thioredoxin reductase; 56.7 15 0.00051 29.2 5.0 36 147-183 278-313 (320)
40 1vdc_A NTR, NADPH dependent th 56.5 15 0.00051 29.5 4.9 37 146-183 286-322 (333)
41 3lzw_A Ferredoxin--NADP reduct 56.1 15 0.00051 29.2 4.9 37 147-183 277-314 (332)
42 3cty_A Thioredoxin reductase; 55.7 15 0.00052 29.4 4.9 36 147-183 280-315 (319)
43 2q0l_A TRXR, thioredoxin reduc 55.7 15 0.00051 29.2 4.8 36 147-183 273-308 (311)
44 2zbw_A Thioredoxin reductase; 55.0 15 0.00051 29.5 4.7 37 147-183 279-316 (335)
45 4gcm_A TRXR, thioredoxin reduc 54.7 13 0.00043 29.9 4.2 36 147-183 270-305 (312)
46 2q7v_A Thioredoxin reductase; 51.6 18 0.00063 29.0 4.7 36 147-183 276-311 (325)
47 1fl2_A Alkyl hydroperoxide red 51.4 19 0.00066 28.5 4.8 36 147-183 269-304 (310)
48 2a87_A TRXR, TR, thioredoxin r 48.9 23 0.00077 28.7 4.9 36 147-183 280-315 (335)
49 2gqf_A Hypothetical protein HI 47.2 17 0.00058 31.1 4.0 34 148-181 364-400 (401)
50 3h8l_A NADH oxidase; membrane 45.9 27 0.00093 29.3 5.1 37 147-183 299-335 (409)
51 2gjc_A Thiazole biosynthetic e 45.1 12 0.00043 31.7 2.8 37 148-184 284-325 (326)
52 3ab1_A Ferredoxin--NADP reduct 45.1 24 0.00083 28.7 4.6 37 147-183 290-327 (360)
53 1rp0_A ARA6, thiazole biosynth 43.9 9.2 0.00031 30.9 1.7 37 148-184 234-275 (284)
54 4fk1_A Putative thioredoxin re 42.1 21 0.0007 28.6 3.6 37 146-183 263-299 (304)
55 4a5l_A Thioredoxin reductase; 41.1 31 0.0011 27.2 4.5 36 147-183 276-311 (314)
56 2vdc_G Glutamate synthase [NAD 39.4 34 0.0012 29.8 4.8 36 146-183 408-443 (456)
57 3h28_A Sulfide-quinone reducta 38.4 39 0.0013 28.6 5.0 36 148-183 287-332 (430)
58 3oz2_A Digeranylgeranylglycero 37.8 18 0.00062 29.3 2.6 36 148-183 277-315 (397)
59 3sx6_A Sulfide-quinone reducta 37.5 45 0.0015 28.4 5.2 37 147-183 297-343 (437)
60 2ywl_A Thioredoxin reductase r 37.4 52 0.0018 23.8 4.9 36 147-183 135-170 (180)
61 3v76_A Flavoprotein; structura 35.8 21 0.00073 30.8 2.9 31 148-178 383-416 (417)
62 2e1m_B L-glutamate oxidase; L- 34.4 2.8 9.5E-05 31.3 -2.7 57 12-86 52-110 (130)
63 1hyu_A AHPF, alkyl hydroperoxi 23.5 90 0.0031 27.4 4.8 36 147-183 480-515 (521)
64 1jnr_A Adenylylsulfate reducta 23.2 93 0.0032 28.3 4.9 38 138-181 428-465 (643)
65 3cp8_A TRNA uridine 5-carboxym 22.9 68 0.0023 29.8 4.0 31 148-181 379-409 (641)
66 3ces_A MNMG, tRNA uridine 5-ca 22.1 78 0.0027 29.5 4.2 31 148-181 385-415 (651)
67 3vrd_B FCCB subunit, flavocyto 21.5 1.2E+02 0.0041 24.9 5.0 36 148-183 287-323 (401)
68 3klj_A NAD(FAD)-dependent dehy 21.4 80 0.0027 26.6 3.9 34 148-181 258-293 (385)
69 1gte_A Dihydropyrimidine dehyd 21.2 96 0.0033 30.0 4.8 36 146-183 472-507 (1025)
70 4dna_A Probable glutathione re 20.2 1.1E+02 0.0038 26.0 4.6 33 147-181 298-330 (463)
No 1
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=99.89 E-value=1.9e-23 Score=167.72 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=90.4
Q ss_pred hhcccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeee--ccccCCCCCCCCCCCCCCCCCcccc
Q psy13543 53 NGRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRC--LHSSWGTNPHFRGSYSCRSLTTERL 130 (184)
Q Consensus 53 ~a~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~--~~~~W~~Dp~s~Gsys~~~~g~~~~ 130 (184)
.++.+..+++++ +++.++++|+++||+.+ . .++.+ +.++|.+|||++|+|++++||++..
T Consensus 47 ~A~~~~~l~~~e-------~~~~~l~~L~~~~g~~~-~----------~~~~~~~~~~~W~~dp~~~Ga~s~~~pg~~~~ 108 (181)
T 2e1m_C 47 DAARWDSFDDAE-------RYGYALENLQSVHGRRI-E----------VFYTGAGQTQSWLRDPYACGEAAVYTPHQMTA 108 (181)
T ss_dssp HHHHHTTSCTTT-------THHHHHHHHHHHHCGGG-G----------GTEEEEEEEEESSSCTTTSSSEECCCTTHHHH
T ss_pred HHHHHHcCCHHH-------HHHHHHHHHHHHhCCCc-H----------hhccCcceecccCCCCCCCCcccCcCCCchHH
Confidence 456677777666 89999999999998752 2 24477 9999999999999999999998864
Q ss_pred ccchHhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 131 NTSAADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 131 ~~~~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.++.|++|++ |||||||||+. ++||||||++||+|||++|+..+
T Consensus 109 --~~~~l~~p~g------rl~FAGe~ts~-~~g~~eGAl~SG~raA~~i~~~l 152 (181)
T 2e1m_C 109 --FHLDVVRPEG------PVYFAGEHVSL-KHAWIEGAVETAVRAAIAVNEAP 152 (181)
T ss_dssp --HHHHHHSCBT------TEEECSGGGTT-STTSHHHHHHHHHHHHHHHHTCC
T ss_pred --HHHHHhCCCC------cEEEEEHHHcC-CccCHHHHHHHHHHHHHHHHHHh
Confidence 6789999987 89999999996 99999999999999999999765
No 2
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=99.83 E-value=1.6e-20 Score=175.41 Aligned_cols=111 Identities=29% Similarity=0.423 Sum_probs=93.7
Q ss_pred hcccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccc
Q psy13543 54 GRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTS 133 (184)
Q Consensus 54 a~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~ 133 (184)
++.+..+++++ +++.++++|+++||.. ..|+|+.+.+++|.+|||++|+|++++||+... +
T Consensus 541 a~~~~~lsdee-------~~~~~l~~L~~~~g~~----------~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~--~ 601 (662)
T 2z3y_A 541 AGIMENISDDV-------IVGRCLAILKGIFGSS----------AVPQPKETVVSRWRADPWARGSYSYVAAGSSGN--D 601 (662)
T ss_dssp HHHHTTSCHHH-------HHHHHHHHHHHHHCTT----------SSCCCSEEEECCTTTCTTTSSSCEECBTTCCTH--H
T ss_pred HHHHHhCCHHH-------HHHHHHHHHHHHhCCc----------ccCCCceeEEEEECCCCCCCcccccCCCCCchh--h
Confidence 34455666655 8999999999999864 245799999999999999999999999998774 7
Q ss_pred hHhhcCccCC-------CCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 134 AADLGAPVSN-------GQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 134 ~~~L~~P~~~-------~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
++.|++|+.+ ....+|||||||||+..++||||||++||+|||++|++.+
T Consensus 602 ~~~l~~p~~~~~~~~~~~~~~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~~~ 658 (662)
T 2z3y_A 602 YDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF 658 (662)
T ss_dssp HHHHHCCBCC---------CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcCccccccccccCCCCcEEEEeccccCCCCcCHHHHHHHHHHHHHHHHHHc
Confidence 7889999852 1122499999999999999999999999999999999875
No 3
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=99.82 E-value=3.1e-20 Score=178.92 Aligned_cols=111 Identities=29% Similarity=0.423 Sum_probs=94.3
Q ss_pred hcccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccc
Q psy13543 54 GRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTS 133 (184)
Q Consensus 54 a~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~ 133 (184)
++.+..+++++ +++.++++|+++||.. ..|+|+.+.+++|.+|||++|+|++++||+... +
T Consensus 712 a~~l~~lsdee-------l~~~~l~~L~~ifG~~----------~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~--~ 772 (852)
T 2xag_A 712 AGIMENISDDV-------IVGRCLAILKGIFGSS----------AVPQPKETVVSRWRADPWARGSYSYVAAGSSGN--D 772 (852)
T ss_dssp HHHGGGSCHHH-------HHHHHHHHHHHHHCTT----------TCCCCSEEEECCTTTCTTTSSSCEECBTTCCTT--H
T ss_pred HHHHhcCCHHH-------HHHHHHHHHHHHhCcc----------ccCCceEEEEEecCCCCCcCccccccCCCcchh--h
Confidence 44566666665 9999999999999864 245799999999999999999999999998774 7
Q ss_pred hHhhcCccCC-------CCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 134 AADLGAPVSN-------GQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 134 ~~~L~~P~~~-------~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
++.|++|+.+ ....+|||||||||+..++||||||++||+|||.+|+..+
T Consensus 773 ~~~L~~P~~~~~~~p~~~~~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~~l 829 (852)
T 2xag_A 773 YDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF 829 (852)
T ss_dssp HHHTTSCBCCCCSSTTCCCCCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCccccccccccccCCCCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 8889999852 1223599999999999999999999999999999999764
No 4
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=99.82 E-value=2.7e-20 Score=162.24 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=78.6
Q ss_pred HHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeEEEcc
Q psy13543 75 FCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFAG 154 (184)
Q Consensus 75 ~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl~FAG 154 (184)
.++.+|+++|+.. .|+++..++|++|||++|+|++++||+.+. .++.|++|++ ||||||
T Consensus 339 ~~~~~l~~~~~~~-------------~~~~~~~~~W~~d~~~~G~~~~~~~g~~~~--~~~~l~~p~g------~~~fAG 397 (431)
T 3k7m_X 339 AVKDAVLYYLPEV-------------EVLGIDYHDWIADPLFEGPWVAPRVGQFSR--VHKELGEPAG------RIHFVG 397 (431)
T ss_dssp HHHHHHHHHCTTC-------------EEEEEECCCTTTCTTTSSSSCCCCTTTTTT--SSGGGGSCBT------TEEECS
T ss_pred HHHHHHHHhcCCC-------------CccEeEecccCCCCCCCCCCCCcCCCCCcc--cHHHHhCCCC------cEEEEe
Confidence 4667888998642 289999999999999999999999998764 7899999987 999999
Q ss_pred ccccCcCCccHHHHHHHHHHHHHHHHHh
Q psy13543 155 EATSEHQYSTVNGAVETGWREADRILTL 182 (184)
Q Consensus 155 E~Ts~~~~G~veGA~~SG~raA~~Il~~ 182 (184)
|||+..++||||||++||+|||++|+..
T Consensus 398 e~t~~~~~g~~~GA~~sg~raa~~i~~~ 425 (431)
T 3k7m_X 398 SDVSLEFPGYIEGALETAECAVNAILHS 425 (431)
T ss_dssp GGGCSSSTTSHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccCCeEehHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999964
No 5
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=99.81 E-value=1.2e-20 Score=180.17 Aligned_cols=103 Identities=27% Similarity=0.445 Sum_probs=90.6
Q ss_pred cccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccch
Q psy13543 55 RNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSA 134 (184)
Q Consensus 55 ~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~ 134 (184)
+.+..+++++ +++.++++|+++||.. .+|+|+.+.+++|.+|||++|+|+++.||+... .+
T Consensus 673 ~~l~~lsdee-------l~~~~l~~L~~ifg~~----------~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~--~~ 733 (776)
T 4gut_A 673 ASVRTLDDKQ-------VLQQCMATLRELFKEQ----------EVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGE--AY 733 (776)
T ss_dssp HHHHTSCHHH-------HHHHHHHHHHHHTTTS----------CCCCCSEEEECCGGGCTTTCCSEEEEBTTCCTH--HH
T ss_pred HHHHcCCHHH-------HHHHHHHHHHHHhCcc----------cccCcceEEEecCCCCCccCCCCCccCCCCchh--HH
Confidence 4455666665 9999999999999964 356799999999999999999999999987653 78
Q ss_pred HhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHH
Q psy13543 135 ADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILT 181 (184)
Q Consensus 135 ~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~ 181 (184)
+.|++|+.+ |||||||||+..++||||||++||+|||++|++
T Consensus 734 ~~L~~p~~g-----rL~FAGE~Ts~~~~gtveGAi~SG~RaA~~Ila 775 (776)
T 4gut_A 734 DIIAEDIQG-----TVFFAGEATNRHFPQTVTGAYLSGVREASKIAA 775 (776)
T ss_dssp HHHHCCBTT-----TEEECSGGGCSSSCSSHHHHHHHHHHHHHHHHC
T ss_pred HHHhCcCCC-----cEEEEehhhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence 899999853 999999999999999999999999999999986
No 6
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=99.76 E-value=7.5e-19 Score=158.19 Aligned_cols=103 Identities=24% Similarity=0.268 Sum_probs=72.8
Q ss_pred HHHHHHHHhhcCCccc-ccCCCCC----CCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcC-ccCCCCCC
Q psy13543 74 TFCVASLSHLRTGEAQ-ADNHGPK----VTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGA-PVSNGQGK 147 (184)
Q Consensus 74 ~~vl~~L~~lFG~~~a-~~~~~~~----~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~-P~~~~~~~ 147 (184)
..+|++|.++||.... .....|. ...|.+.++.+++|.+|||++|+|+++.||+... .....|++ |.+
T Consensus 399 ~~~l~~l~~~~g~~~~~~~~~~~~~~~~a~~p~~~~~~~~~W~~dp~~~Gsys~~~~g~~~~-~~~~~l~~~~~~----- 472 (516)
T 1rsg_A 399 QPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPV-DMVVAMSNGQDS----- 472 (516)
T ss_dssp HHHHHHHHHHTTCCCCEECCC-------CCSCEEEEEEECCTTTCTTTTTCCCCCBC----C-HHHHHHHHCSSS-----
T ss_pred HHHHHHHHhhccccccccCCCCcccccccCCCccceEEEecCCCCCCCCccCCCcCCCCCHH-HHHHHhccCCCC-----
Confidence 4577888888873100 0000000 0113334999999999999999999999998542 13566765 444
Q ss_pred CeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 148 PVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
|||||||||+..++||||||++||+|||++|++.+
T Consensus 473 -rl~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~~~ 507 (516)
T 1rsg_A 473 -RIRFAGEHTIMDGAGCAYGAWESGRREATRISDLL 507 (516)
T ss_dssp -SEEECSTTSCSTTBTSHHHHHHHHHHHHHHHHHHH
T ss_pred -cEEEeccccccCCCccchhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999865
No 7
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=99.73 E-value=4.4e-18 Score=149.34 Aligned_cols=103 Identities=25% Similarity=0.367 Sum_probs=86.7
Q ss_pred cccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCC-CCCCCccccccc
Q psy13543 55 RNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYS-CRSLTTERLNTS 133 (184)
Q Consensus 55 ~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys-~~~~g~~~~~~~ 133 (184)
+.|..+++++ +++.++++|.++||.. +++|+.+.+++|.+|||++|+|+ +.+||.... .
T Consensus 348 ~~~~~~~~~~-------~~~~~l~~L~~~~~~~-----------~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~--~ 407 (453)
T 2yg5_A 348 DAMFELSAEE-------RKATILASLARYLGPK-----------AEEPVVYYESDWGSEEWTRGCYAASFDLGGLHR--Y 407 (453)
T ss_dssp HHHHHSCHHH-------HHHHHHHHHHHHHCGG-----------GGCCSEEEECCTTTCTTTCSSSCEEECTTHHHH--H
T ss_pred HHHhcCCHHH-------HHHHHHHHHHHHhCcc-----------CCCccEEEEeecCCCCCCCCCCcCcCCCCcccc--c
Confidence 4455555555 8999999999999863 23599999999999999999997 678886543 3
Q ss_pred hHhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 134 AADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 134 ~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.+.+++|+. +|||||++|+..++|+|+||++||+|||++|++.|
T Consensus 408 ~~~~~~p~~------~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l 451 (453)
T 2yg5_A 408 GADSRTPVG------PIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIARS 451 (453)
T ss_dssp GGGTTCCBT------TEEECCGGGCSTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHhCCcC------ceEEeecccccccccchHHHHHHHHHHHHHHHHHh
Confidence 456889987 89999999999999999999999999999999876
No 8
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=99.73 E-value=1.1e-17 Score=148.56 Aligned_cols=104 Identities=25% Similarity=0.459 Sum_probs=89.0
Q ss_pred cccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccch
Q psy13543 55 RNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSA 134 (184)
Q Consensus 55 ~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~ 134 (184)
+.|..++.++ +++.++++|+++|++. .+++|+.+.+++|.+|||++|+|++.+||.... ..
T Consensus 355 ~~~~~~~~~e-------~~~~~l~~L~~~~Pg~----------~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~--~~ 415 (472)
T 1b37_A 355 RRIEQQSDEQ-------TKAEIMQVLRKMFPGK----------DVPDATDILVPRWWSDRFYKGTFSNWPVGVNRY--EY 415 (472)
T ss_dssp HHHHTSCHHH-------HHHHHHHHHHHHCTTS----------CCCCCSEEECCCTTTCTTTSSSEEECBTTCCHH--HH
T ss_pred HHHHhCCHHH-------HHHHHHHHHHHHcCCC----------CCCCCceEEecccCCCCCCCcccCCCCCCCChh--HH
Confidence 3455555555 9999999999999532 245689999999999999999999888997653 57
Q ss_pred HhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 135 ADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 135 ~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+.+++|++ +||||||+|++.+.|+||||++||+|||++|++.+
T Consensus 416 ~~l~~p~~------~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i~~~l 458 (472)
T 1b37_A 416 DQLRAPVG------RVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCA 458 (472)
T ss_dssp HHHHCCBT------TEEECSGGGCTTTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCC------cEEEeecccCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 88999997 89999999999999999999999999999999765
No 9
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=99.72 E-value=7e-18 Score=151.59 Aligned_cols=104 Identities=23% Similarity=0.267 Sum_probs=88.4
Q ss_pred cccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCC-CCCCCccccccc
Q psy13543 55 RNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYS-CRSLTTERLNTS 133 (184)
Q Consensus 55 ~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys-~~~~g~~~~~~~ 133 (184)
..|..+++++ +++.++++|+++||.. .++.|+.+..++|.+|||++|+|+ +.+||+... .
T Consensus 350 ~~~~~~~~~e-------~~~~vl~~L~~~~~~~----------~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~--~ 410 (520)
T 1s3e_A 350 RKLARLTKEE-------RLKKLCELYAKVLGSL----------EALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQ--Y 410 (520)
T ss_dssp HHHTTSCHHH-------HHHHHHHHHHHHHTCG----------GGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHH--H
T ss_pred hhhhcCCHHH-------HHHHHHHHHHHHhCcc----------ccCCccEEEEEeeCCCCCCCCCCccccCCCcccc--c
Confidence 4455566555 8999999999999863 123599999999999999999997 888987653 4
Q ss_pred hHhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 134 AADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 134 ~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.+.+++|++ +||||||+|+..++|+|+||++||+|||++|++.+
T Consensus 411 ~~~l~~p~~------~L~fAG~~t~~~~~g~v~GAi~SG~~aA~~i~~~l 454 (520)
T 1s3e_A 411 GRVLRQPVD------RIYFAGTETATHWSGYMEGAVEAGERAAREILHAM 454 (520)
T ss_dssp GGGTTCCBT------TEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHhCCCC------CEEEeehhhcCcCcEEhHHHHHHHHHHHHHHHHHH
Confidence 457899987 89999999999999999999999999999999865
No 10
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=99.71 E-value=8.4e-18 Score=149.67 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=84.7
Q ss_pred hcccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCC-CCeeeccccCCCCCCCCCCCCCCCCCcccccc
Q psy13543 54 GRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIP-EPTRCLHSSWGTNPHFRGSYSCRSLTTERLNT 132 (184)
Q Consensus 54 a~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p-~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~ 132 (184)
++.+..+++++ +++.++++|.++||..... +. .+..+.+++|.+|||++|+|++.+|++...
T Consensus 378 a~~~~~~~~~~-------~~~~~l~~L~~~~g~~~~~--------~~~~~~~~~~~~W~~~p~~~G~~~~~~~~~~~~-- 440 (498)
T 2iid_A 378 ANFFQALDFKD-------CADIVFNDLSLIHQLPKKD--------IQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQH-- 440 (498)
T ss_dssp HHTTTTSCHHH-------HHHHHHHHHHHHHTCCHHH--------HHHHEEEEEEEEGGGCTTTCSSEECCCTTHHHH--
T ss_pred HhhhhcCCHHH-------HHHHHHHHHHHHcCCChhh--------hhhhcCccEEEecCCCCCCCceeeecCCcchHH--
Confidence 35566666655 8999999999999832000 00 123478899999999999999999997753
Q ss_pred chHhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 133 SAADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 133 ~~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
..+.+++|++ +||||||+|+.. +|+|+||++||+|+|++|+..+
T Consensus 441 ~~~~l~~p~~------~l~fAGe~t~~~-~g~~~GAi~SG~raA~~i~~~l 484 (498)
T 2iid_A 441 FSDPLTASQG------RIYFAGEYTAQA-HGWIDSTIKSGLRAARDVNLAS 484 (498)
T ss_dssp HHHHHHCCBT------TEEECSGGGSSS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCC------cEEEEEcccccC-CcCHHHHHHHHHHHHHHHHHHh
Confidence 5678899987 899999999875 4999999999999999998765
No 11
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=99.70 E-value=2.4e-17 Score=146.66 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeEE
Q psy13543 72 NQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLL 151 (184)
Q Consensus 72 ~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl~ 151 (184)
+++.++++|+++|+. .++|..+.+++|.+|||++|+|++++||+... ..+.|++|++ |||
T Consensus 394 ~~~~~~~~L~~~~~~------------~~~~~~~~~~~W~~dp~~~g~y~~~~~g~~~~--~~~~l~~p~~------~l~ 453 (495)
T 2vvm_A 394 DVRETLKAVGQLAPG------------TFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSE--CLQGLREKHG------GVV 453 (495)
T ss_dssp CHHHHHHHHHTTSTT------------SCCEEEEEECCTTTCTTTSSSSCCCCTTHHHH--HHHHHHCCBT------TEE
T ss_pred HHHHHHHHHHHhcCC------------CCCceEEEEeEcCCCCCCCCCccCcCCCcchh--hHHHHhCcCC------CEE
Confidence 577899999999864 12589999999999999999999999998753 6788999987 899
Q ss_pred EccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 152 FAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 152 FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
||||+|+..++||||||++||+|||++|+..+
T Consensus 454 fAGe~t~~~~~g~veGAi~SG~raA~~i~~~l 485 (495)
T 2vvm_A 454 FANSDWALGWRSFIDGAIEEGTRAARVVLEEL 485 (495)
T ss_dssp ECCGGGCSSSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred EechhhhcCCceEEEhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999875
No 12
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=99.52 E-value=1.8e-14 Score=127.88 Aligned_cols=103 Identities=14% Similarity=0.153 Sum_probs=82.9
Q ss_pred cccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCC------CCcc
Q psy13543 55 RNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRS------LTTE 128 (184)
Q Consensus 55 ~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~------~g~~ 128 (184)
+.|..+++++ +++.++++|.++||..... +|+.+..++|.++||++|+|+... |+..
T Consensus 377 ~~~~~~~~~~-------~~~~~l~~L~~~~~~~~~~----------~~~~~~~~~W~~~~~~~G~~~~~~~~~~~~~~~~ 439 (489)
T 2jae_A 377 EAFESLTHRQ-------RLAKAIAEGSEIHGEKYTR----------DISSSFSGSWRRTKYSESAWANWAGSGGSHGGAA 439 (489)
T ss_dssp HHHHTSCHHH-------HHHHHHHHHHHHHCGGGGS----------SEEEEEEEEGGGSTTTSCSSCEETTC-------C
T ss_pred hhhhcCCHHH-------HHHHHHHHHHHHcCcchhh----------hccccEEEEcCCCCCCCCcchhcccccCCCcccc
Confidence 4455556555 8999999999999852111 488888999999999999998776 7765
Q ss_pred ccccchHhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 129 RLNTSAADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 129 ~~~~~~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.. ..+.+++|++ +|||||++|+. +.++|+||++||+|+|++|++.|
T Consensus 440 ~~--~~~~l~~~~~------~l~faG~~~~~-~~~~v~gAi~sg~~aA~~i~~~l 485 (489)
T 2jae_A 440 TP--EYEKLLEPVD------KIYFAGDHLSN-AIAWQHGALTSARDVVTHIHERV 485 (489)
T ss_dssp CH--HHHHHTSCBT------TEEECSGGGBS-STTSHHHHHHHHHHHHHHHHHHH
T ss_pred hh--hHHHHhCCCC------cEEEeEHHhcc-CccHHHHHHHHHHHHHHHHHHHH
Confidence 43 5778899986 89999999985 78999999999999999999865
No 13
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=99.24 E-value=2.7e-12 Score=121.89 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=73.5
Q ss_pred HHHHHHHHHH--hhcCCcccccCCCCCC-----CCCCCeeeccccCCCCCCCCCCCCCCCCCcccccc----ch--Hhhc
Q psy13543 72 NQTFCVASLS--HLRTGEAQADNHGPKV-----TIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNT----SA--ADLG 138 (184)
Q Consensus 72 ~~~~vl~~L~--~lFG~~~a~~~~~~~~-----~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~----~~--~~L~ 138 (184)
+++.++++|. ++|++..+. .|.. .-..+.+++.++|.+|| +.|+|....||+..... .. ..+.
T Consensus 566 ~~~~~l~~la~~~~~p~~~~~---~~~~~~~l~~~~~~~~~~~~dW~~dp-s~Gaf~~~~pgq~~~~~l~~~~~~~~~~~ 641 (721)
T 3ayj_A 566 MYRTMVNRAYRYVKYAGASNA---QPWWFYQLLAEARTADRFVFDWTTNK-TAGGFKLDMTGDHHQSNLCFRYHTHALAA 641 (721)
T ss_dssp HHHHHHHHTCCEECCTTCSSC---EECHHHHHHHTSCSTTCEEEEGGGST-TSSSEECCBTTTHHHHHHHHHGGGGGGCT
T ss_pred HHHHHHHHHhhhccCcccccc---ccchhhhhhhhcccCceEEEeCCCCC-CCCccccCCCccchhhhhhhhhhhhcccc
Confidence 4999999999 899753100 0000 00124678999999999 99999999999832000 11 2234
Q ss_pred CccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 139 APVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 139 ~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+|.+ |||||||+|| .+.|+|+||++||++||.+|+..+
T Consensus 642 ~~~g------ri~fAGe~~S-~~~GWieGAl~Sa~~Aa~~i~~~~ 679 (721)
T 3ayj_A 642 SLDN------RFFIASDSYS-HLGGWLEGAFMSALNAVAGLIVRA 679 (721)
T ss_dssp TTCC------CEEECSGGGS-SCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC------CEEEeehhhc-cCCceehHHHHHHHHHHHHHHHHh
Confidence 5555 9999999998 578999999999999999998764
No 14
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=98.76 E-value=5.8e-09 Score=92.48 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeE
Q psy13543 71 LNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVL 150 (184)
Q Consensus 71 ~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl 150 (184)
++++.++++|+++||.. . +|+.+.+++|... |..+.+|..........+.+|+. +|
T Consensus 408 e~~~~v~~~L~~~~g~~--~----------~p~~~~~~~w~~~------~p~~~~g~~~~~~~~~~~~~~~~------~l 463 (504)
T 1sez_A 408 ELKEIVTSDLKQLLGAE--G----------EPTYVNHLYWSKA------FPLYGHNYDSVLDAIDKMEKNLP------GL 463 (504)
T ss_dssp HHHHHHHHHHHHHHCBC--S----------CCSSEEEEEEEEE------EECCCTTHHHHHHHHHHHHHHST------TE
T ss_pred HHHHHHHHHHHHHhCCC--C----------CCeEEEEeECCCC------CCccCcCHHHHHHHHHHHHHhCC------CE
Confidence 39999999999999863 1 4888999999753 33334443211012234556776 79
Q ss_pred EEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 151 LFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 151 ~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
||||++|+ .++|+||+.||.+||++|++.|
T Consensus 464 ~~aG~~~~---g~~v~gai~sG~~aA~~il~~l 493 (504)
T 1sez_A 464 FYAGNHRG---GLSVGKALSSGCNAADLVISYL 493 (504)
T ss_dssp EECCSSSS---CSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCC---CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999986 3689999999999999999865
No 15
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=98.57 E-value=4.6e-08 Score=86.04 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=68.3
Q ss_pred cccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccc-cc
Q psy13543 55 RNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLN-TS 133 (184)
Q Consensus 55 ~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~-~~ 133 (184)
+.+...++++ +++.++++|.++||.. ++|+.+.+++|... +..+.+|..... ..
T Consensus 370 ~~~~~~~~e~-------~~~~~~~~L~~~~g~~------------~~p~~~~v~~w~~a------~p~~~~g~~~~~~~~ 424 (475)
T 3lov_A 370 DHLVHESDEV-------LQQAVLQDLEKICGRT------------LEPKQVIISRLMDG------LPAYTVGHADRIQRV 424 (475)
T ss_dssp CGGGGSCHHH-------HHHHHHHHHHHHHSSC------------CCCSEEEEEEEEEE------EECCCTTHHHHHHHH
T ss_pred CcccCCCHHH-------HHHHHHHHHHHHhCCC------------CCCeEEEEEEcccC------CCCCCCChHHHHHHH
Confidence 4455555555 9999999999999853 15889999999875 222244432110 02
Q ss_pred hHhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 134 AADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 134 ~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.+.+.+|+. +|||||+++.. ..|+||+.||+++|++|+..|
T Consensus 425 ~~~l~~~~~------~l~~aG~~~~g---~g~~~a~~sG~~aA~~i~~~l 465 (475)
T 3lov_A 425 REEVLAQYP------GIYLAGLAYDG---VGLPDCVASAKTMIESIELEQ 465 (475)
T ss_dssp HHHHHHHST------TEEECSTTTSC---SSHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhCC------CEEEEccCCCC---CCHHHHHHHHHHHHHHHHHHh
Confidence 344667776 79999998863 359999999999999999865
No 16
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=98.55 E-value=2.7e-08 Score=86.46 Aligned_cols=95 Identities=11% Similarity=0.144 Sum_probs=67.7
Q ss_pred cccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccc-cc
Q psy13543 55 RNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLN-TS 133 (184)
Q Consensus 55 ~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~-~~ 133 (184)
+.+...++++ +++.++++|.++||.. ++|+.+.+++|... +..+++|..... ..
T Consensus 373 ~~~~~~~~~~-------~~~~~~~~l~~~~g~~------------~~p~~~~~~~w~~a------~p~~~~g~~~~~~~~ 427 (470)
T 3i6d_A 373 ESIVDLSDND-------IINIVLEDLKKVMNIN------------GEPEMTCVTRWHES------MPQYHVGHKQRIKEL 427 (470)
T ss_dssp CGGGTSCHHH-------HHHHHHHHHGGGSCCC------------SCCSEEEEEEEEEE------EEECBTTHHHHHHHH
T ss_pred ccccCCCHHH-------HHHHHHHHHHHHhCCC------------CCceEEEEEEcCCc------cCCCCCCHHHHHHHH
Confidence 3445555554 9999999999999853 25889999999642 333355532210 02
Q ss_pred hHhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 134 AADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 134 ~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.+.|.+|.. +|||||+++. +. .|+||+.||+++|++|++.|
T Consensus 428 ~~~l~~~~~------~l~~aG~~~~--g~-gv~~a~~sG~~aA~~i~~~l 468 (470)
T 3i6d_A 428 REALASAYP------GVYMTGASFE--GV-GIPDCIDQGKAAVSDALTYL 468 (470)
T ss_dssp HHHHHHHST------TEEECSTTTS--CC-SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCC------CEEEEeecCC--CC-CHHHHHHHHHHHHHHHHHHh
Confidence 344667776 8999999875 33 49999999999999999865
No 17
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=98.50 E-value=3e-07 Score=77.59 Aligned_cols=81 Identities=15% Similarity=0.268 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhc-CccCCCCCCCe
Q psy13543 71 LNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLG-APVSNGQGKPV 149 (184)
Q Consensus 71 ~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~-~P~~~~~~~~r 149 (184)
++++.+++.|.++||. .++|+.+.+++|. |+.+..+... ....+. .+. ++
T Consensus 261 ~~~~~~~~~l~~~~g~------------~~~p~~~~v~rW~--------~a~p~~~~~~---~~~~~~~~~~------~~ 311 (342)
T 3qj4_A 261 DVQELVFQQLENILPG------------LPQPIATKCQKWR--------HSQVTNAAAN---CPGQMTLHHK------PF 311 (342)
T ss_dssp HHHHHHHHHHHHHSCS------------CCCCSEEEEEEET--------TCSBSSCCSS---SCSCEEEETT------TE
T ss_pred HHHHHHHHHHHHhccC------------CCCCceeeecccc--------ccccccccCC---CcceeEecCC------cc
Confidence 3999999999999983 2359999999996 2222211100 011122 222 38
Q ss_pred EEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 150 LLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 150 l~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
|++||..+. .++|+||+.||.++|++|+..|
T Consensus 312 l~laGd~~~---g~~v~~ai~sg~~aa~~i~~~l 342 (342)
T 3qj4_A 312 LACGGDGFT---QSNFDGCITSALCVLEALKNYI 342 (342)
T ss_dssp EEECSGGGS---CSSHHHHHHHHHHHHHHHTTC-
T ss_pred EEEEccccC---CCCccHHHHHHHHHHHHHHhhC
Confidence 999999985 4799999999999999998765
No 18
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=98.48 E-value=2e-07 Score=81.83 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeE
Q psy13543 71 LNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVL 150 (184)
Q Consensus 71 ~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl 150 (184)
++.+.+++.|.++||.. .+|+.+.+++|.. ++..+.++... ....+..++.. .++|
T Consensus 388 ~~~~~~~~~l~~~~~~~------------~~p~~~~~~~w~~------~~p~~~~g~~~---~~~~~~~~~~~---~~~l 443 (478)
T 2ivd_A 388 ALAALAREELKALAGVT------------ARPSFTRVFRWPL------GIPQYNLGHLE---RVAAIDAALQR---LPGL 443 (478)
T ss_dssp HHHHHHHHHHHHHHCCC------------SCCSEEEEEEESS------CCBCCBTTHHH---HHHHHHHHHHT---STTE
T ss_pred HHHHHHHHHHHHHhCCC------------CCCcEEEEEECCC------cccCCCcCHHH---HHHHHHHHHhh---CCCE
Confidence 38999999999999853 1477788899964 35445666532 22223222210 0289
Q ss_pred EEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 151 LFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 151 ~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
||||+++. . ..|+||+.||+++|++|+..+
T Consensus 444 ~~aG~~~~--g-~gv~gA~~SG~~aA~~i~~~l 473 (478)
T 2ivd_A 444 HLIGNAYK--G-VGLNDCIRNAAQLADALVAGN 473 (478)
T ss_dssp EECSTTTS--C-CSHHHHHHHHHHHHHHHCC--
T ss_pred EEEccCCC--C-CCHHHHHHHHHHHHHHHHHhh
Confidence 99999983 2 349999999999999998765
No 19
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=98.04 E-value=7.5e-06 Score=68.00 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=63.9
Q ss_pred hcccccCChhhhhccchHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccc
Q psy13543 54 GRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTS 133 (184)
Q Consensus 54 a~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~ 133 (184)
++.+..+++++ +.+.+++.|.++||.. +++|.....++|. |....|.. +.
T Consensus 238 ~~~~~~~~~~~-------~~~~l~~~l~~~lg~~-----------~~~p~~~~~~rw~---~a~~~~~~---~~------ 287 (336)
T 1yvv_A 238 SRQNLDASREQ-------VIEHLHGAFAELIDCT-----------MPAPVFSLAHRWL---YARPAGAH---EW------ 287 (336)
T ss_dssp HHHTTTSCHHH-------HHHHHHHHHHTTCSSC-----------CCCCSEEEEEEEE---EEEESSCC---CC------
T ss_pred HHHHHhCCHHH-------HHHHHHHHHHHHhCCC-----------CCCCcEEEccccC---ccCCCCCC---CC------
Confidence 34455555555 8999999999999853 3457778899997 22222211 10
Q ss_pred hHhhcCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhcC
Q psy13543 134 AADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLKD 184 (184)
Q Consensus 134 ~~~L~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l~ 184 (184)
..+..+.+ ||+|||++++. ++|++|+.||.++|++|++.++
T Consensus 288 -~~~~~~~~------rl~laGDa~~g---~gv~~a~~sg~~lA~~l~~~~~ 328 (336)
T 1yvv_A 288 -GALSDADL------GIYVCGDWCLS---GRVEGAWLSGQEAARRLLEHLQ 328 (336)
T ss_dssp -SCEEETTT------TEEECCGGGTT---SSHHHHHHHHHHHHHHHHHHTT
T ss_pred -CeeecCCC------CEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHhh
Confidence 11222333 89999999964 6999999999999999998764
No 20
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=97.43 E-value=0.00021 Score=61.35 Aligned_cols=80 Identities=14% Similarity=0.183 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeEE
Q psy13543 72 NQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLL 151 (184)
Q Consensus 72 ~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl~ 151 (184)
.++.++++|.++||.. ++.-..++.|.. +.....++.. ..+.-..|+. +|+
T Consensus 345 ~~~~~~~~l~~~~p~~-------------~~~~~~v~~~~~------~~P~~~~~~~----~~~~~~~p~~------gL~ 395 (425)
T 3ka7_A 345 EIEMGLEDLKEIFPGK-------------RYEVLLIQSYHD------EWPVNRAASG----TDPGNETPFS------GLY 395 (425)
T ss_dssp HHHHHHHHHHHHSTTC-------------CEEEEEEEEEBT------TBCSBSSCTT----CCCCSBCSSB------TEE
T ss_pred HHHHHHHHHHHhCCCC-------------ceEEEEEEEECC------CccccccccC----CCCCCCCCcC------CeE
Confidence 5689999999999752 133346677865 3333444421 2334456666 799
Q ss_pred EccccccCcCCccHHHHHHHHHHHHHHHH
Q psy13543 152 FAGEATSEHQYSTVNGAVETGWREADRIL 180 (184)
Q Consensus 152 FAGE~Ts~~~~G~veGA~~SG~raA~~Il 180 (184)
+||.+|...+.-.|+|++.||+++|++|+
T Consensus 396 laG~~~~~~gg~gv~~~~~s~~~~~~~i~ 424 (425)
T 3ka7_A 396 VVGDGAKGKGGIEVEGVALGVMSVMEKVL 424 (425)
T ss_dssp ECSTTSCCTTCCHHHHHHHHHHHHHHC--
T ss_pred EeCCccCCCCCCccHHHHHHHHHHHHHhh
Confidence 99999999988999999999999999986
No 21
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=97.28 E-value=0.00045 Score=60.24 Aligned_cols=87 Identities=17% Similarity=0.136 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCe
Q psy13543 70 HLNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPV 149 (184)
Q Consensus 70 ~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~r 149 (184)
+++++.+++.|.++||.. ++|..+.+++|.. ++..+.++... ....+.+.+.. ..++
T Consensus 387 ~~~~~~~~~~L~~~~g~~------------~~~~~~~v~rw~~------a~p~~~~g~~~---~~~~~~~~l~~--~~~~ 443 (477)
T 3nks_A 387 ELFQQRAQEAAATQLGLK------------EMPSHCLVHLHKN------CIPQYTLGHWQ---KLESARQFLTA--HRLP 443 (477)
T ss_dssp HHHHHHHHHHHHHHHCCC------------SCCSEEEEEEEEE------EEECCBTTHHH---HHHHHHHHHHH--TTCS
T ss_pred HHHHHHHHHHHHHHhCCC------------CCCcEEEEEEcCC------ccCCCCCCHHH---HHHHHHHHHHh--cCCC
Confidence 349999999999999852 2588889999965 55555666432 12222222210 0027
Q ss_pred EEEccccccCcCCccHHHHHHHHHHHHHHHHHh
Q psy13543 150 LLFAGEATSEHQYSTVNGAVETGWREADRILTL 182 (184)
Q Consensus 150 l~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~ 182 (184)
|+|||..+. ...|++|+.||+++|++|+..
T Consensus 444 l~l~G~~~~---G~gv~~a~~sg~~aA~~il~~ 473 (477)
T 3nks_A 444 LTLAGASYE---GVAVNDCIESGRQAAVSVLGT 473 (477)
T ss_dssp EEECSTTTS---CCSHHHHHHHHHHHHHHHHHC
T ss_pred EEEEccCCC---CCcHHHHHHHHHHHHHHHHhc
Confidence 999998853 235999999999999999864
No 22
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=97.18 E-value=0.00095 Score=50.39 Aligned_cols=80 Identities=19% Similarity=0.178 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeEE
Q psy13543 72 NQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLL 151 (184)
Q Consensus 72 ~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl~ 151 (184)
..+.....+...++.. .++|.....++|. |++... ... ...+..+. +||+
T Consensus 249 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~w~---~a~~~~---~~~-------~~~~~~~~------~~v~ 298 (336)
T 3kkj_A 249 VIEHLHGAFAELIDCT-----------MPAPVFSLAHRWL---YARPAG---AHE-------WGALSDAD------LGIY 298 (336)
T ss_dssp HHHHHHHHHHTTCSSC-----------CCCCSEEEEEEEE---EEEESS---CCC-------CSSEEETT------TTEE
T ss_pred hhhhhhhhhhhhccCC-----------cCcchheecccee---eccccc---ccC-------ccceeeCC------CCEE
Confidence 5566666677776542 4467778888883 111111 110 01112223 3899
Q ss_pred EccccccCcCCccHHHHHHHHHHHHHHHHHhcC
Q psy13543 152 FAGEATSEHQYSTVNGAVETGWREADRILTLKD 184 (184)
Q Consensus 152 FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l~ 184 (184)
+||+++.. +.|++|+.||.++|+.|++.|.
T Consensus 299 l~GDa~~g---~gv~~A~~sG~~aA~~I~~~L~ 328 (336)
T 3kkj_A 299 VCGDWCLS---GRVEGAWLSGQEAARRLLEHLQ 328 (336)
T ss_dssp ECCGGGTT---SSHHHHHHHHHHHHHHHHHHTT
T ss_pred EEecccCC---cCHHHHHHHHHHHHHHHHHHhh
Confidence 99998753 5699999999999999998873
No 23
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=97.15 E-value=0.00023 Score=61.25 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=27.1
Q ss_pred CeEEEccccccCcCCccHHHHHHHHHHHHHHHH
Q psy13543 148 PVLLFAGEATSEHQYSTVNGAVETGWREADRIL 180 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il 180 (184)
++|||||+.+. .|++|+|+.||.++|++|+
T Consensus 394 ~~l~~aG~~~~---~g~~e~a~~Sg~~aA~~~l 423 (424)
T 2b9w_A 394 RNTFYAGEIMS---FGNFDEVCHYSKDLVTRFF 423 (424)
T ss_dssp GGEEECSGGGS---CSSHHHHHHHHHHHHHHHT
T ss_pred CCceEeccccc---cccHHHHHHHHHHHHHHhc
Confidence 38999999886 5899999999999999986
No 24
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=97.13 E-value=0.0013 Score=56.75 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCC-C-CCCCccccccchHhhcCccCCCCCCCe
Q psy13543 72 NQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYS-C-RSLTTERLNTSAADLGAPVSNGQGKPV 149 (184)
Q Consensus 72 ~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys-~-~~~g~~~~~~~~~~L~~P~~~~~~~~r 149 (184)
..+.++++|.++|| . + ++ ..+++|.. ++. + ..++. +.+ ..| . +
T Consensus 329 ~~~~~~~~L~~~~p-~-~-----------~~--~~~~~~~~------~~p~~~~~~~~-----~~~--~~~-~------g 373 (421)
T 3nrn_A 329 AIEKGWEELLEIFP-E-G-----------EP--LLAQVYRD------GNPVNRTRAGL-----HIE--WPL-N------E 373 (421)
T ss_dssp HHHHHHHHHHHHCT-T-C-----------EE--EEEEEC------------------------CCC--CCC-S------S
T ss_pred HHHHHHHHHHHHcC-C-C-----------eE--EEeeeccC------CCCcccccCCC-----CCC--CCC-C------c
Confidence 58999999999998 2 1 23 34566753 221 1 11221 111 334 3 8
Q ss_pred EEEccccccCcCCccHHHHHHHHHHHHHHH
Q psy13543 150 LLFAGEATSEHQYSTVNGAVETGWREADRI 179 (184)
Q Consensus 150 l~FAGE~Ts~~~~G~veGA~~SG~raA~~I 179 (184)
||+||.++...+.-.|+||+.||++||+.|
T Consensus 374 l~laGd~~~~~~g~~~~ga~~sg~~aA~~l 403 (421)
T 3nrn_A 374 VLVVGDGYRPPGGIEVDGIALGVMKALEKL 403 (421)
T ss_dssp EEECSTTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEECCcccCCCceeeehHHHHHHHHHHHh
Confidence 999999998764558899999999999987
No 25
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=96.56 E-value=0.0015 Score=57.23 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCCCCCCCCCeeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCCeE
Q psy13543 71 LNQTFCVASLSHLRTGEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVL 150 (184)
Q Consensus 71 ~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~rl 150 (184)
++++.+++.|.++.+-. ..++++...+++|.. +|....++... ....+.+-+.. ..|
T Consensus 389 ~l~~~~~~~L~~~~~i~----------~~~~i~~~~v~r~~~------ayP~y~~~~~~---~~~~~~~~l~~----~~l 445 (513)
T 4gde_A 389 TILADCIQGLVNTEMLK----------PTDEIVSTYHRRFDH------GYPTPTLEREG---TLTQILPKLQD----KDI 445 (513)
T ss_dssp THHHHHHHHHHHTTSSC----------TTCEEEEEEEEEEEE------EEECCBTTHHH---HHHHHHHHHHH----TTE
T ss_pred HHHHHHHHHHHHhcCCC----------CccceEEEEEEECCC------eecccCHhHHH---HHHHHHHHHhh----cCc
Confidence 39999999999998753 223578888888842 35444555332 22223222221 259
Q ss_pred EEccccccCcCC-ccHHHHHHHHHHHHHHHHH
Q psy13543 151 LFAGEATSEHQY-STVNGAVETGWREADRILT 181 (184)
Q Consensus 151 ~FAGE~Ts~~~~-G~veGA~~SG~raA~~Il~ 181 (184)
||+|---.-.|. +.|++|+.||+.||++|+.
T Consensus 446 ~~~GR~g~~~Y~~~n~D~a~~~g~~aa~~I~~ 477 (513)
T 4gde_A 446 WSRGRFGSWRYEVGNQDHSFMLGVEAVDNIVN 477 (513)
T ss_dssp EECSTTTTCCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCcCCCCHHHHHHHHHHHHHHHHc
Confidence 999955444443 6899999999999999985
No 26
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=96.12 E-value=0.0046 Score=54.25 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=27.4
Q ss_pred cCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 138 GAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 138 ~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
..|+. +|||||..|.+. +-|.||+.||+.||++|++.|
T Consensus 454 ~t~i~------gLyl~G~~t~pG--~Gv~ga~~SG~~aA~~il~dL 491 (501)
T 4dgk_A 454 DKTIT------NLYLVGAGTHPG--AGIPGVIGSAKATAGLMLEDL 491 (501)
T ss_dssp --CCT------TEEECCCH--------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC------CEEEECCCCCCc--ccHHHHHHHHHHHHHHHHHHh
Confidence 35676 799999887652 579999999999999999876
No 27
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=93.03 E-value=0.021 Score=49.48 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=29.6
Q ss_pred eEEEccccccCcCCccHHHHHHHHHHHHHHHHHh
Q psy13543 149 VLLFAGEATSEHQYSTVNGAVETGWREADRILTL 182 (184)
Q Consensus 149 rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~ 182 (184)
+|+|||.+++..+ +.|++++.||.++|++|++.
T Consensus 354 ~v~~~G~~~~~~~-~~~e~~i~sa~~~a~~l~~~ 386 (399)
T 1v0j_A 354 KVLFGGRLGTYQY-LDMHMAIASALNMYDNVLAP 386 (399)
T ss_dssp CEEECHHHHHTCC-CCHHHHHHHHHHHHHHTHHH
T ss_pred CEEEccceEEEEe-cCHHHHHHHHHHHHHHHhhh
Confidence 8999999988765 89999999999999998764
No 28
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=89.44 E-value=0.18 Score=44.73 Aligned_cols=87 Identities=8% Similarity=0.016 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHhhcCCcccccCCCCCCCCCCC-eeeccccCCCCCCCCCCCCCCCCCccccccchHhhcCccCCCCCCC
Q psy13543 70 HLNQTFCVASLSHLRTGEAQADNHGPKVTIPEP-TRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKP 148 (184)
Q Consensus 70 ~~~~~~vl~~L~~lFG~~~a~~~~~~~~~~p~p-~~~~~~~W~~Dp~s~Gsys~~~~g~~~~~~~~~~L~~P~~~~~~~~ 148 (184)
+++++.+++.|.++.+-. .. ++ ....+++|. .+|....++... ....+.+-+.. .
T Consensus 364 ~~l~~~a~~~L~~~~~~~-~~----------~~~~~~~v~r~~------~~yP~y~~~~~~---~~~~~~~~l~~---~- 419 (484)
T 4dsg_A 364 STLIEDCIVGCLASNLLL-PE----------DLLVSKWHYRIE------KGYPTPFIGRNN---LLEKAQPELMS---R- 419 (484)
T ss_dssp TSHHHHHHHHHHHTTSCC-TT----------CCEEEEEEEEEE------EEEECCBTTHHH---HHHHHHHHHHH---T-
T ss_pred HHHHHHHHHHHHHcCCCC-cc----------ceEEEEEEEEeC------ccccCCCccHHH---HHHHHHHHHHh---C-
Confidence 349999999999997532 11 13 344566773 556666666432 23333333331 1
Q ss_pred eEEEccccccCcCC-ccHHHHHHHHHHHHHHHH
Q psy13543 149 VLLFAGEATSEHQY-STVNGAVETGWREADRIL 180 (184)
Q Consensus 149 rl~FAGE~Ts~~~~-G~veGA~~SG~raA~~Il 180 (184)
+|+|+|-.....+. .-|+.++.||.+||++|+
T Consensus 420 ~l~~~Gr~g~~~y~v~~~d~~i~sg~~aa~~i~ 452 (484)
T 4dsg_A 420 CIYSRGRFGAWRYEVGNQDHSFMQGVEAIDHVL 452 (484)
T ss_dssp TEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHT
T ss_pred CcEeecCCcccccCCCChHHHHHHHHHHHHHHH
Confidence 59999986665543 579999999999999998
No 29
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=84.47 E-value=0.35 Score=40.07 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=28.3
Q ss_pred CCeEEEccccccCcC----Cc-cHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQ----YS-TVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~----~G-~veGA~~SG~raA~~Il~~l 183 (184)
.+.||.||.+.+... .| +.-|++.||++||+.|++.|
T Consensus 283 vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~l 324 (326)
T 3fpz_A 283 VDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHF 324 (326)
T ss_dssp SBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHh
Confidence 357999998765322 13 56678999999999999886
No 30
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=78.35 E-value=2.5 Score=33.22 Aligned_cols=35 Identities=20% Similarity=0.099 Sum_probs=30.9
Q ss_pred CCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 146 GKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 146 ~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+.+.||-+|+.. ..|+...|+++|+.+|..|++.|
T Consensus 197 ~~p~iya~G~~a---~~g~~~~~~~~g~~~a~~i~~~l 231 (232)
T 2cul_A 197 RLEGLYAVGLCV---REGDYARMSEEGKRLAEHLLHEL 231 (232)
T ss_dssp TSBSEEECGGGT---SCCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccceeeeecc---cCccHHHHHHHHHHHHHHHHhhc
Confidence 446899999988 56799999999999999999876
No 31
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=75.47 E-value=2.4 Score=34.27 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=30.1
Q ss_pred CCeEEEcc--ccccCcCCccHHHHHHHHHHHHHHHHHhcC
Q psy13543 147 KPVLLFAG--EATSEHQYSTVNGAVETGWREADRILTLKD 184 (184)
Q Consensus 147 ~~rl~FAG--E~Ts~~~~G~veGA~~SG~raA~~Il~~l~ 184 (184)
.++||.+| ..+. .....+.+|...|+.+|..|++.|.
T Consensus 314 ~~~vya~Gd~d~~~-~~~~~~~~A~~~g~~~a~~i~~~l~ 352 (357)
T 4a9w_A 314 VPSVWLLGYGDWNG-MASATLIGVTRYAREAVRQVTAYCA 352 (357)
T ss_dssp CTTEEECSSCGGGS-TTCSSTTTHHHHHHHHHHHHHHHTC
T ss_pred CCCeEEeccccccc-cchhhhhhhHHHHHHHHHHHHHHHH
Confidence 35899999 5554 3467889999999999999998774
No 32
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=72.51 E-value=4.6 Score=31.72 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=30.4
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.++||.+|+.+.. +..++-|+..|..||..|.+.|
T Consensus 257 ~~~vya~GD~~~~--~~~~~~A~~~g~~aa~~i~~~l 291 (297)
T 3fbs_A 257 ARGIFACGDVARP--AGSVALAVGDGAMAGAAAHRSI 291 (297)
T ss_dssp STTEEECSGGGCT--TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCc--hHHHHHHHHhHHHHHHHHHHHH
Confidence 3589999998775 7899999999999999998765
No 33
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=72.34 E-value=2.9 Score=35.70 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=29.4
Q ss_pred CeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 148 PVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
++|+|+|--....+ +.|+.++.||.++|++|++.+
T Consensus 336 ~~~~~~Gr~~~~~~-~~~~d~i~sa~~~a~~~~~~~ 370 (384)
T 2bi7_A 336 TNITFVGRLGTYRY-LDMDVTIAEALKTAEVYLNSL 370 (384)
T ss_dssp SSEEECHHHHTTCC-CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEccccEEEEe-CCHHHHHHHHHHHHHHHhhhh
Confidence 37999998766554 789999999999999998754
No 34
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=65.39 E-value=4.4 Score=35.08 Aligned_cols=39 Identities=21% Similarity=0.151 Sum_probs=29.1
Q ss_pred cCccCCCCCCCeEEEccccccCcC--Cc-cHHHHHHHHHHHHHHHHHh
Q psy13543 138 GAPVSNGQGKPVLLFAGEATSEHQ--YS-TVNGAVETGWREADRILTL 182 (184)
Q Consensus 138 ~~P~~~~~~~~rl~FAGE~Ts~~~--~G-~veGA~~SG~raA~~Il~~ 182 (184)
.+++. .||||||-+.-.. .| .+.-|+-+|..|++.+.+.
T Consensus 401 ~~~i~------GLy~aGEv~~v~g~~GG~~l~~a~~~G~~Ag~~aa~~ 442 (447)
T 2i0z_A 401 SKFTN------GLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGEN 442 (447)
T ss_dssp ESSSB------TEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCC------CEEEEEeeccCccCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 35676 7999999988321 12 4567999999999988764
No 35
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=64.68 E-value=9.3 Score=30.55 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=30.3
Q ss_pred CeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 148 PVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
++||.+|..+.. .+..+.-|+.+|..||..|++.|
T Consensus 300 ~~vya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~l 334 (338)
T 3itj_A 300 PGFFAAGDVQDS-KYRQAITSAGSGCMAALDAEKYL 334 (338)
T ss_dssp TTEEECGGGGCS-SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeeccCCC-CccceeeehhhhHHHHHHHHHHH
Confidence 589999998874 35788999999999999999876
No 36
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=64.41 E-value=8.9 Score=30.35 Aligned_cols=37 Identities=27% Similarity=0.271 Sum_probs=30.8
Q ss_pred CCeEEEccccccCc-CCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEH-QYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~-~~G~veGA~~SG~raA~~Il~~l 183 (184)
.++||.+|+.+... .+..+..|+..|..+|..|++.|
T Consensus 279 ~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 316 (323)
T 3f8d_A 279 VPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYV 316 (323)
T ss_dssp STTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEcceecCCCCcccceeehhhHHHHHHHHHHHHH
Confidence 35899999987643 36789999999999999998765
No 37
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=63.06 E-value=6.5 Score=33.18 Aligned_cols=33 Identities=9% Similarity=0.257 Sum_probs=27.9
Q ss_pred CeEEEccccccCcCCccHHHHHHHHHHHHHHHHH
Q psy13543 148 PVLLFAGEATSEHQYSTVNGAVETGWREADRILT 181 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~ 181 (184)
++|+|+|--.+..+ +.|+.++.||.++|++|++
T Consensus 333 ~~~~~~Gr~~~~~y-~~~~d~i~sa~~~a~~~~~ 365 (367)
T 1i8t_A 333 DKVIFGGRLAEYKY-YDMHQVISAALYQVKNIMS 365 (367)
T ss_dssp TTEEECSTTTTTSC-CCHHHHHHHHHHHHHHHHS
T ss_pred CCEEEcccceeeEe-cCHHHHHHHHHHHHHHHhc
Confidence 37999998655554 7899999999999999875
No 38
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=62.17 E-value=11 Score=29.85 Aligned_cols=36 Identities=19% Similarity=0.085 Sum_probs=30.6
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.++||.+|+.+.. .+..+.-|+..|..||..|++.|
T Consensus 276 ~~~v~a~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~l 311 (315)
T 3r9u_A 276 VAGLFAAGDLRKD-APKQVICAAGDGAVAALSAMAYI 311 (315)
T ss_dssp STTEEECGGGBTT-CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecccCC-chhhhhhHHhhHHHHHHHHHHHH
Confidence 3589999998754 36899999999999999998865
No 39
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=56.69 E-value=15 Score=29.22 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=30.0
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.++||.+|..+... +..+.-|+..|..||..|.+.|
T Consensus 278 ~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l 313 (320)
T 1trb_A 278 IPGVFAAGDVMDHI-YRQAITSAGTGCMAALDAERYL 313 (320)
T ss_dssp STTEEECGGGGCSS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEcccccCCc-chhhhhhhccHHHHHHHHHHHH
Confidence 45899999988753 4567889999999999998876
No 40
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=56.52 E-value=15 Score=29.51 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=30.3
Q ss_pred CCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 146 GKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 146 ~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+.+.||.+|..+... .....-|+..|..||..|++.|
T Consensus 286 ~~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l 322 (333)
T 1vdc_A 286 SVPGVFAAGDVQDKK-YRQAITAAGTGCMAALDAEHYL 322 (333)
T ss_dssp SSTTEEECGGGGCSS-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeeeccCCC-chhHHHHHHhHHHHHHHHHHHH
Confidence 345899999988753 4678889999999999998765
No 41
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=56.09 E-value=15 Score=29.17 Aligned_cols=37 Identities=5% Similarity=0.025 Sum_probs=31.0
Q ss_pred CCeEEEccccccCc-CCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEH-QYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~-~~G~veGA~~SG~raA~~Il~~l 183 (184)
.++||-+|+.+... .+..+.-|+..|..+|..|+..|
T Consensus 277 ~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 314 (332)
T 3lzw_A 277 IEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAYM 314 (332)
T ss_dssp STTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEccceecCCCCcceEeeehhhHHHHHHHHHHhh
Confidence 35899999988642 46789999999999999998765
No 42
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=55.74 E-value=15 Score=29.35 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=30.2
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.++||.+|..+... ...++-|+..|..+|..|++.|
T Consensus 280 ~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l 315 (319)
T 3cty_A 280 VPGVYAAGDVTSGN-FAQIASAVGDGCKAALSLYSDS 315 (319)
T ss_dssp STTEEECSTTBTTC-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecccCcc-hhhHHHHHHHHHHHHHHHHHHh
Confidence 35899999988753 4678899999999999998876
No 43
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=55.72 E-value=15 Score=29.19 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=30.3
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.++||.+|+.+... +...+-|+..|..+|..|++.|
T Consensus 273 ~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l 308 (311)
T 2q0l_A 273 VQGLFAAGDIRIFA-PKQVVCAASDGATAALSVISYL 308 (311)
T ss_dssp STTEEECSTTBTTC-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEcccccCcc-hHHHHHHHHhHHHHHHHHHHHH
Confidence 35899999988752 5789999999999999998765
No 44
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=55.05 E-value=15 Score=29.54 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=30.5
Q ss_pred CCeEEEccccccCc-CCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEH-QYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~-~~G~veGA~~SG~raA~~Il~~l 183 (184)
.++||.+|+.+... ....++.|+..|..+|..|+..|
T Consensus 279 ~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 316 (335)
T 2zbw_A 279 IPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAAYA 316 (335)
T ss_dssp STTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHHHh
Confidence 35899999987643 35789999999999999998765
No 45
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=54.74 E-value=13 Score=29.85 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=28.8
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.+.||-+|.-+... +..++-|+..|+.||..|.++|
T Consensus 270 ~pgIyA~GDv~~~~-~~~~~~A~~~G~~AA~~i~~~L 305 (312)
T 4gcm_A 270 VPGIFAAGDVRDKG-LRQIVTATGDGSIAAQSAAEYI 305 (312)
T ss_dssp STTEEECSTTBSCS-CCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCc-chHHHHHHHHHHHHHHHHHHHH
Confidence 35799999976542 3568889999999999998765
No 46
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=51.65 E-value=18 Score=28.95 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=29.9
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.+.||.+|..+... +..++-|...|..+|..|+..|
T Consensus 276 ~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l 311 (325)
T 2q7v_A 276 IPMLFAAGDVSDYI-YRQLATSVGAGTRAAMMTERQL 311 (325)
T ss_dssp STTEEECSTTTCSS-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecccCcc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999987653 5788999999999999998764
No 47
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=51.42 E-value=19 Score=28.47 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=29.6
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.+.||.+|..+... ...+.-|+..|..+|..|++.|
T Consensus 269 ~~~vya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l 304 (310)
T 1fl2_A 269 VKGVFAAGDCTTVP-YKQIIIATGEGAKASLSAFDYL 304 (310)
T ss_dssp STTEEECSTTBSCS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecccCCc-chhhhhhHhhHHHHHHHHHHHH
Confidence 35899999987753 3678889999999999998765
No 48
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=48.86 E-value=23 Score=28.68 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=29.6
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.++||.+|..+... .....-|...|..+|..|.+.|
T Consensus 280 ~~~iya~GD~~~~~-~~~~~~A~~~g~~aA~~i~~~l 315 (335)
T 2a87_A 280 LPGVFAAGDLVDRT-YRQAVTAAGSGCAAAIDAERWL 315 (335)
T ss_dssp STTEEECGGGTCCS-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeeecCCcc-HHHHHHHHHhHHHHHHHHHHHh
Confidence 35899999988753 4678889999999999988765
No 49
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=47.16 E-value=17 Score=31.09 Aligned_cols=34 Identities=21% Similarity=0.091 Sum_probs=26.6
Q ss_pred CeEEEccccccCc--CCc-cHHHHHHHHHHHHHHHHH
Q psy13543 148 PVLLFAGEATSEH--QYS-TVNGAVETGWREADRILT 181 (184)
Q Consensus 148 ~rl~FAGE~Ts~~--~~G-~veGA~~SG~raA~~Il~ 181 (184)
+.||||||-..-. -.| -++-|+.||..|++.+..
T Consensus 364 ~gly~~GE~ldv~g~~GGynlq~a~~sg~~ag~~~~~ 400 (401)
T 2gqf_A 364 SGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR 400 (401)
T ss_dssp TTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEeEEeccCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4799999988764 234 468899999999988753
No 50
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=45.95 E-value=27 Score=29.25 Aligned_cols=37 Identities=22% Similarity=0.024 Sum_probs=32.1
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.++||.+|..++...+...+-|...|..+|..|+..|
T Consensus 299 ~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 299 YDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp CTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 3589999999986567788999999999999998875
No 51
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=45.15 E-value=12 Score=31.70 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=28.6
Q ss_pred CeEEEccccccCcC----Cc-cHHHHHHHHHHHHHHHHHhcC
Q psy13543 148 PVLLFAGEATSEHQ----YS-TVNGAVETGWREADRILTLKD 184 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~----~G-~veGA~~SG~raA~~Il~~l~ 184 (184)
+.|+++|-+.+..+ .| +.-|=+.||++||+.|++.|+
T Consensus 284 ~~~~~~g~~~~~~~~~~r~g~~fg~m~~sg~~~a~~~~~~~~ 325 (326)
T 2gjc_A 284 DNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA 325 (326)
T ss_dssp TTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEECChHHHHhcCCCCCChhhhhhhhhhHHHHHHHHHHhh
Confidence 57999997775432 22 567778999999999999874
No 52
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=45.07 E-value=24 Score=28.73 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=30.2
Q ss_pred CCeEEEccccccCc-CCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEH-QYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~-~~G~veGA~~SG~raA~~Il~~l 183 (184)
.+.||.+|+.+... .+..+.-|+..|..+|..|+..|
T Consensus 290 ~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 327 (360)
T 3ab1_A 290 VDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSYI 327 (360)
T ss_dssp STTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCccCCCCccceeehhHHHHHHHHHHHHhhc
Confidence 35899999987643 35788999999999999998764
No 53
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=43.88 E-value=9.2 Score=30.86 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=28.9
Q ss_pred CeEEEccccccCc-----CCccHHHHHHHHHHHHHHHHHhcC
Q psy13543 148 PVLLFAGEATSEH-----QYSTVNGAVETGWREADRILTLKD 184 (184)
Q Consensus 148 ~rl~FAGE~Ts~~-----~~G~veGA~~SG~raA~~Il~~l~ 184 (184)
+.||.+|..+... -..+..||+.||+.+|..|+..|+
T Consensus 234 p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~~l~ 275 (284)
T 1rp0_A 234 PGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALG 275 (284)
T ss_dssp TTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHHHhh
Confidence 4799999776432 234678999999999999998764
No 54
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=42.08 E-value=21 Score=28.60 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=27.9
Q ss_pred CCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 146 GKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 146 ~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+.+.||-+|.-+.... ..+.=|+..|..||..|.+.|
T Consensus 263 s~p~IyA~GDv~~~~~-~~~~~A~~~G~~AA~~i~~~L 299 (304)
T 4fk1_A 263 SEKNIYLAGETTTQGP-SSLIIAASQGNKAAIAINSDI 299 (304)
T ss_dssp SSTTEEECSHHHHTSC-CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeccCCCcc-hHHHHHHHHHHHHHHHHHHHH
Confidence 3457999999876533 345568889999999997765
No 55
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=41.12 E-value=31 Score=27.21 Aligned_cols=36 Identities=11% Similarity=-0.044 Sum_probs=27.6
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.+.||-||.-+...+ ..+.=|...|..||..|.++|
T Consensus 276 ~pgIyA~GDv~~~~~-~~~~~A~~~G~~AA~~~~~yL 311 (314)
T 4a5l_A 276 VDGVFACGDVCDRVY-RQAIVAAGSGCMAALSCEKWL 311 (314)
T ss_dssp STTEEECSTTTCSSC-CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeccCCcc-hHHHHHHHHHHHHHHHHHHHH
Confidence 357999999776532 346668889999999998876
No 56
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=39.39 E-value=34 Score=29.81 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=29.9
Q ss_pred CCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 146 GKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 146 ~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+.+.||.+|..+.. +.++.-|+..|..||..|...|
T Consensus 408 s~~~VfA~GD~~~g--~~~v~~A~~~G~~aA~~i~~~L 443 (456)
T 2vdc_G 408 NMDGVFAAGDIVRG--ASLVVWAIRDGRDAAEGIHAYA 443 (456)
T ss_dssp SSTTEEECGGGGSS--CCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeccccCC--chHHHHHHHHHHHHHHHHHHHh
Confidence 34589999997653 5789999999999999998765
No 57
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=38.38 E-value=39 Score=28.60 Aligned_cols=36 Identities=14% Similarity=-0.085 Sum_probs=30.6
Q ss_pred CeEEEccccccCcC----------CccHHHHHHHHHHHHHHHHHhc
Q psy13543 148 PVLLFAGEATSEHQ----------YSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~----------~G~veGA~~SG~raA~~Il~~l 183 (184)
++||-+|..++... +-+.+-|...|..+|+.|++.|
T Consensus 287 ~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~~g~~aa~ni~~~l 332 (430)
T 3h28_A 287 KNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDI 332 (430)
T ss_dssp TTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeeeccCCccCCCCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 58999999887542 5688999999999999998875
No 58
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=37.76 E-value=18 Score=29.30 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=27.8
Q ss_pred CeEEEccccccCcCC---ccHHHHHHHHHHHHHHHHHhc
Q psy13543 148 PVLLFAGEATSEHQY---STVNGAVETGWREADRILTLK 183 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~~---G~veGA~~SG~raA~~Il~~l 183 (184)
+||+.+|.+.+...+ .=|.=|+++|..+|+.|.+.+
T Consensus 277 ~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l 315 (397)
T 3oz2_A 277 PGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAI 315 (397)
T ss_dssp TTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 489999998765433 347779999999999887654
No 59
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=37.48 E-value=45 Score=28.37 Aligned_cols=37 Identities=14% Similarity=-0.160 Sum_probs=30.9
Q ss_pred CCeEEEccccccCc----------CCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEH----------QYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~----------~~G~veGA~~SG~raA~~Il~~l 183 (184)
.++||.+|..++.. .+-+.+-|...|..+|..|++.|
T Consensus 297 ~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l 343 (437)
T 3sx6_A 297 YANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADL 343 (437)
T ss_dssp CTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 35899999988754 24588999999999999999876
No 60
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=37.41 E-value=52 Score=23.84 Aligned_cols=36 Identities=17% Similarity=0.043 Sum_probs=28.8
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.+.||-+|.-+.... ...+-|...|..+|..|+..+
T Consensus 135 ~~~i~a~GD~~~~~~-~~~~~A~~~g~~aa~~i~~~~ 170 (180)
T 2ywl_A 135 YPRVYAAGVARGKVP-GHAIISAGDGAYVAVHLVSDL 170 (180)
T ss_dssp STTEEECGGGGTCCS-CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecccCcch-hhHHHHHHhHHHHHHHHHHHh
Confidence 358999998877543 478889999999999998653
No 61
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=35.79 E-value=21 Score=30.77 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=24.3
Q ss_pred CeEEEccccccCcC--Cc-cHHHHHHHHHHHHHH
Q psy13543 148 PVLLFAGEATSEHQ--YS-TVNGAVETGWREADR 178 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~--~G-~veGA~~SG~raA~~ 178 (184)
+.||||||-..-+. .| -++-|+.||..|++.
T Consensus 383 ~gLy~aGE~lD~~~~~GGynlq~a~stG~~ag~~ 416 (417)
T 3v76_A 383 PGLYFVGECVDVTGWLGGYNFQWAWASGFVAGQD 416 (417)
T ss_dssp TTEEECGGGBSEEECSSSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeEecccCCCCHHHHHHHHHHHHHhCc
Confidence 47999999877662 34 579999999987764
No 62
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=34.38 E-value=2.8 Score=31.27 Aligned_cols=57 Identities=7% Similarity=0.042 Sum_probs=18.8
Q ss_pred cchhhhhhcccCCCCCCCCCCCCCceeeeeehhhhhhHH--hhhhcccccCChhhhhccchHHHHHHHHHHHhhcCC
Q psy13543 12 VDYVWWKHLMYGGGGGGGGDAPEKHKLIIVGAGAIAENR--QKNGRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTG 86 (184)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~a~~~--~~~a~~l~~~~~~~~~~~~~~~~~~vl~~L~~lFG~ 86 (184)
.+.+||++.++.|. +..++.. .|.+.-+. .+.++.|..++++ .++.++..|..++++
T Consensus 52 f~~~FW~~~~~~gd----~s~~~~~------pg~l~~f~~wg~~A~~~~~l~~~--------~r~~~~~~l~~~~p~ 110 (130)
T 2e1m_B 52 FSRRWWEFTEADWK----RELDAIA------PGLYDYYQQWGEDDAEAALALPQ--------SVRNLPTGLLGAHPS 110 (130)
T ss_dssp ESSCGGGCCHHHHH----HHHHHHS------TTHHHHHHHHCCCSCCCC----------------------------
T ss_pred ECCCCCCCCCcccc----ccCCCCC------CeEEEEecccCHHHHHHhcCCHH--------HHHHHHHHHHHhCCC
Confidence 47889999877641 1111111 12222222 4567888888763 588999999999985
No 63
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=23.54 E-value=90 Score=27.39 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=29.7
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
.++||.+|.-+... ...+.-|+..|..||..|...|
T Consensus 480 ~p~VfA~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~L 515 (521)
T 1hyu_A 480 VKGVFAAGDCTTVP-YKQIIIATGEGAKASLSAFDYL 515 (521)
T ss_dssp STTEEECSTTBCCS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecccCCC-cceeeehHHhHHHHHHHHHHHH
Confidence 35899999988754 3678899999999999998765
No 64
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=23.19 E-value=93 Score=28.29 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=27.9
Q ss_pred cCccCCCCCCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHH
Q psy13543 138 GAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILT 181 (184)
Q Consensus 138 ~~P~~~~~~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~ 181 (184)
..|+. .||=|||.+......+.-+++..|.++++.+++
T Consensus 428 ~t~I~------GLyAaGe~a~~~~~r~~~~sl~~G~~ag~~aa~ 465 (643)
T 1jnr_A 428 MTTVK------GLFAIGDCAGANPHKFSSGSFTEGRIAAKAAVR 465 (643)
T ss_dssp BCSSB------TEEECGGGBCSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CceeC------CEEeeeccccccccccchhHHHHHHHHHHHHHH
Confidence 46776 799999988765556666777777777666554
No 65
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=22.92 E-value=68 Score=29.77 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=23.0
Q ss_pred CeEEEccccccCcCCccHHHHHHHHHHHHHHHHH
Q psy13543 148 PVLLFAGEATSEHQYSTVNGAVETGWREADRILT 181 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~ 181 (184)
+.|||||+-+... ||. -|+.+|..|+..++.
T Consensus 379 ~gLf~AGqi~g~~--Gy~-eA~a~G~~AG~naa~ 409 (641)
T 3cp8_A 379 ENLFFAGQINGTS--GYE-EAAAQGLMAGINAVR 409 (641)
T ss_dssp BTEEECSGGGTBC--CHH-HHHHHHHHHHHHHHH
T ss_pred CCEEEEEeecCCc--cHH-HHHHHHHHHHHHHHH
Confidence 4799999988875 777 567777777666544
No 66
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=22.06 E-value=78 Score=29.47 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=22.8
Q ss_pred CeEEEccccccCcCCccHHHHHHHHHHHHHHHHH
Q psy13543 148 PVLLFAGEATSEHQYSTVNGAVETGWREADRILT 181 (184)
Q Consensus 148 ~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~ 181 (184)
+.|||||+-+-.. ||.+ |..+|..|+.....
T Consensus 385 ~gLf~AGqinGtt--GYeE-AaaqGl~AG~nAa~ 415 (651)
T 3ces_A 385 QGLFFAGQINGTT--GYEE-AAAQGLLAGLNAAR 415 (651)
T ss_dssp BTEEECSGGGTCC--CHHH-HHHHHHHHHHHHHH
T ss_pred CCeEEEEEecCCc--ChHH-HHHHHHHHHHHHHH
Confidence 4799999888775 8885 66777776665543
No 67
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=21.49 E-value=1.2e+02 Score=24.93 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=30.0
Q ss_pred CeEEEccccccCc-CCccHHHHHHHHHHHHHHHHHhc
Q psy13543 148 PVLLFAGEATSEH-QYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 148 ~rl~FAGE~Ts~~-~~G~veGA~~SG~raA~~Il~~l 183 (184)
++||-+|.-++.. .+-+.+-|...|..+|+.|++.|
T Consensus 287 p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~~~l 323 (401)
T 3vrd_B 287 PGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVVALL 323 (401)
T ss_dssp TTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecccccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 5799999977543 46788999999999999998765
No 68
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=21.40 E-value=80 Score=26.56 Aligned_cols=34 Identities=12% Similarity=-0.038 Sum_probs=28.5
Q ss_pred CeEEEccccccCc--CCccHHHHHHHHHHHHHHHHH
Q psy13543 148 PVLLFAGEATSEH--QYSTVNGAVETGWREADRILT 181 (184)
Q Consensus 148 ~rl~FAGE~Ts~~--~~G~veGA~~SG~raA~~Il~ 181 (184)
+.||.+|+-+... .++..+-|...|+.+|..|+.
T Consensus 258 ~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g 293 (385)
T 3klj_A 258 KDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACG 293 (385)
T ss_dssp TTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence 4899999988743 357899999999999999874
No 69
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=21.22 E-value=96 Score=30.01 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=29.4
Q ss_pred CCCeEEEccccccCcCCccHHHHHHHHHHHHHHHHHhc
Q psy13543 146 GKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTLK 183 (184)
Q Consensus 146 ~~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~~l 183 (184)
+.+.||.+|.-+. .+..+.-|+..|..||..|...|
T Consensus 472 s~~~VfA~GD~~~--~~~~~~~A~~~G~~aA~~i~~~L 507 (1025)
T 1gte_A 472 SEPWVFAGGDIVG--MANTTVESVNDGKQASWYIHKYI 507 (1025)
T ss_dssp SSTTEEECSGGGC--SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCC--CchHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999875 35689999999999999998653
No 70
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=20.24 E-value=1.1e+02 Score=26.03 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=27.8
Q ss_pred CCeEEEccccccCcCCccHHHHHHHHHHHHHHHHH
Q psy13543 147 KPVLLFAGEATSEHQYSTVNGAVETGWREADRILT 181 (184)
Q Consensus 147 ~~rl~FAGE~Ts~~~~G~veGA~~SG~raA~~Il~ 181 (184)
.++||.+|+-+. .+...+-|...|+.+|..|+.
T Consensus 298 ~~~iya~GD~~~--~~~~~~~A~~~g~~aa~~i~g 330 (463)
T 4dna_A 298 TPGIYALGDVTD--RVQLTPVAIHEAMCFIETEYK 330 (463)
T ss_dssp STTEEECSGGGS--SCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEecCC--CCCChHHHHHHHHHHHHHHcC
Confidence 358999999876 357788999999999999874
Done!