RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13543
(184 letters)
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace amines.
In lower eukaryotes such as aspergillus and in bacteria
the main role of amine oxidases is to provide a source
of ammonium. PAOs in plants, bacteria and protozoa
oxidase spermidine and spermine to an aminobutyral,
diaminopropane and hydrogen peroxide and are involved in
the catabolism of polyamines. Other members of this
family include tryptophan 2-monooxygenase, putrescine
oxidase, corticosteroid binding proteins and
antibacterial glycoproteins.
Length = 444
Score = 69.1 bits (169), Expect = 4e-14
Identities = 35/87 (40%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 95 PKVTIPEPTRCLHSSWGTNPHFRGSYS-CRSLTTERLNTSAADLGAPVSNGQGKPVLLFA 153
+P+P L S W T+P+ RGSYS R L PV G L FA
Sbjct: 366 GPEDVPDPVNFLVSDWHTDPYARGSYSYPPVGDDSRY---RPALRTPVGPG-----LFFA 417
Query: 154 GEATSEHQYSTVNGAVETGWREADRIL 180
GE TS TV GAVE+G R A R+L
Sbjct: 418 GEHTSGGYPGTVEGAVESGLRAARRVL 444
>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 65.2 bits (159), Expect = 9e-13
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 103 TRCLHSSWGTNPHFRGSYSCRSLTT--ERLNTSAADL---GAPVSNGQGKPVLLFAGEAT 157
+ L S WGT+P F GSYS ++ + + L+ A L G LLFAGEAT
Sbjct: 450 VKVLKSKWGTDPLFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEAT 509
Query: 158 SEHQYSTVNGAVETGWREADRIL 180
YST +GA +G REA+R+L
Sbjct: 510 HRTHYSTTHGAYFSGLREANRLL 532
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 58.2 bits (141), Expect = 2e-10
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 100 PEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEATSE 159
EP + L S WG++P+ G YS + L APV N L FAGEATS
Sbjct: 359 TEPVQYLVSRWGSDPNSLGCYSYDLVGKPH--DLYERLRAPVDN------LFFAGEATSS 410
Query: 160 HQYSTVNGAVETG 172
+V+GA TG
Sbjct: 411 DFPGSVHGAYSTG 423
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 57.6 bits (139), Expect = 4e-10
Identities = 50/166 (30%), Positives = 70/166 (42%), Gaps = 52/166 (31%)
Query: 44 GAIAENRQKNGR-----NLSKS-----------------GQNTAKRSNHLNQTFCVASLS 81
GA AE G+ N+ K+ GQ+ + S+H+N V
Sbjct: 1045 GATAEETDLRGQCFMFWNVKKTVGAPVLIALVVGKAAIDGQSMSS-SDHVNHALMV---- 1099
Query: 82 HLRT--GEAQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAAD--- 136
LR GEA +P+P + + WG +P G+YS ++ S D
Sbjct: 1100 -LRKLFGEA---------LVPDPVASVVTDWGRDPFSYGAYSYVAI-----GASGEDYDI 1144
Query: 137 LGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWREADRILTL 182
LG PV N L FAGEAT + TV GA+ +G REA RI+ +
Sbjct: 1145 LGRPVEN-----CLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDI 1185
>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1.
Length = 738
Score = 55.7 bits (134), Expect = 2e-09
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 8/89 (8%)
Query: 93 HGPK-VTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLL 151
+ PK + +P+P + + + WG++P GSYS R+ +S +D + G+ L
Sbjct: 514 YNPKGINVPDPIQTICTRWGSDPLSYGSYS-----HVRVQSSGSDYDILAESVSGR--LF 566
Query: 152 FAGEATSEHQYSTVNGAVETGWREADRIL 180
FAGEAT+ +T++GA +G REA RIL
Sbjct: 567 FAGEATTRQYPATMHGAFLSGLREASRIL 595
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 47.8 bits (114), Expect = 7e-07
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 98 TIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEAT 157
IPE T L W +N F+GSYS + R + APV G+ + F GE T
Sbjct: 396 NIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFD--QIRAPV----GR--VYFTGEHT 447
Query: 158 SEHQYSTVNGAVETGWREADRIL 180
SE V+GA G A+ +L
Sbjct: 448 SEKYNGYVHGAYLAGIDTANDLL 470
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 45.4 bits (107), Expect = 6e-06
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 12/91 (13%)
Query: 93 HGPKVTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAAD---LGAPVSNGQGKPV 149
H + +P+P + + + WG + GSYS ++ +S D L V +G+
Sbjct: 595 HPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAV-----GSSGDDYDILAESVGDGR---- 645
Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRIL 180
+ FAGEAT++ +T++GA +G REA IL
Sbjct: 646 VFFAGEATNKQYPATMHGAFLSGMREAANIL 676
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 44.6 bits (105), Expect = 1e-05
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 97 VTIPEPTRCLHSSWGTNPHFRGSYSCRSLTTERLNTSAAD---LGAPVSNGQGKPVLLFA 153
+ +P+P + + + WG +P GSYS + S D L V +G+ L FA
Sbjct: 543 INVPDPLQTVCTRWGGDPFSLGSYS-----NVAVGASGDDYDILAESVGDGR----LFFA 593
Query: 154 GEATSEHQYSTVNGAVETGWREA 176
GEAT+ +T++GA TG REA
Sbjct: 594 GEATTRRYPATMHGAFVTGLREA 616
>gnl|CDD|153336 cd07652, F-BAR_Rgd1, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae
Rho GTPase activating protein Rgd1 and similar
proteins. F-BAR domains are dimerization modules that
bind and bend membranes and are found in proteins
involved in membrane dynamics and actin reorganization.
Saccharomyces cerevisiae Rgd1 is a GTPase activating
protein (GAP) with activity towards Rho3p and Rho4p,
which are involved in bud growth and cytokinesis,
respectively. At low pH, S. cerevisiae Rgd1 is required
for cell survival and the activation of the protein
kinase C pathway, which is important in cell integrity
and the maintenance of cell shape. It contains an
N-terminal F-BAR domain and a C-terminal Rho GAP
domain. The F-BAR domain of S. cerevisiae Rgd1 binds to
phosphoinositides and plays an important role in the
localization of the protein to the bud tip/neck during
the cell cycle. F-BAR domains form banana-shaped dimers
with a positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 234
Score = 33.9 bits (78), Expect = 0.028
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 44 GAIAENRQKNGRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEAQADNH 93
AI E + + L+++ +T KR +H +F A S L E ADN
Sbjct: 32 AAIEEEHARGLKKLARTTLDTYKRPDHKQGSFSNAYHSSLEFHEKLADNG 81
>gnl|CDD|222395 pfam13810, DUF4185, Domain of unknown function (DUF4185).
Length = 313
Score = 29.2 bits (66), Expect = 1.3
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 126 TTERLNTSAADLGAPVSNGQGKPVLLFAGEATSEHQYSTVNGAVETGWR 174
TT+R DLG NG G+ VL+ G+ G WR
Sbjct: 9 TTDRFGVGGTDLGIMWDNGDGR-VLIAFGDTFGGC------GGGGGDWR 50
>gnl|CDD|226220 COG3696, COG3696, Putative silver efflux pump [Inorganic ion
transport and metabolism].
Length = 1027
Score = 28.0 bits (63), Expect = 3.8
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 26/83 (31%)
Query: 109 SWGTNPHFRGSYSCRSLTTERLNTSAADL--GA-----PVSNGQGKPVLLFAGEATSEHQ 161
GT+ ++ R ERL+ + L G P S G G + +
Sbjct: 98 KDGTDLYW-----ARQRVLERLSQVQSQLPEGVEPELGPDSTGLGW-IYQYTLVD----- 146
Query: 162 YSTVNGAVETGWREADRILTLKD 184
++G + D + L+D
Sbjct: 147 --------KSGKTDLDELRELQD 161
>gnl|CDD|223901 COG0831, UreA, Urea amidohydrolase (urease) gamma subunit [Amino
acid transport and metabolism].
Length = 100
Score = 26.1 bits (58), Expect = 6.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 34 EKHKLIIVGAGAIAENRQKNGRNLSK 59
EK KL+I A +A R+ G L+
Sbjct: 7 EKDKLLIFTAAELARRRKARGLKLNY 32
>gnl|CDD|183913 PRK13241, ureA, urease subunit gamma; Provisional.
Length = 100
Score = 26.0 bits (58), Expect = 6.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 34 EKHKLIIVGAGAIAENRQKNG 54
EK KL+I A +AE R+ G
Sbjct: 7 EKDKLLIFTAALLAERRKARG 27
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.131 0.408
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,131,629
Number of extensions: 789866
Number of successful extensions: 581
Number of sequences better than 10.0: 1
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 23
Length of query: 184
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 93
Effective length of database: 6,901,388
Effective search space: 641829084
Effective search space used: 641829084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.3 bits)