RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13543
         (184 letters)



>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
           demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 449

 Score = 59.9 bits (143), Expect = 1e-11
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 108 SSWGTNPHFRGSY-SCRSLTTERLNTSAADLGAPVSNGQGKPVLLFAGEATSEHQYSTVN 166
             W T+   R           + +        +     Q  P L FAGE T  +  +TV+
Sbjct: 371 PEWKTSAVQRMVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVH 430

Query: 167 GAVETGWREADRIL 180
           GA+ +G REA RI 
Sbjct: 431 GALLSGLREAGRIA 444


>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1,
           LSD1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 109

 Score = 39.8 bits (92), Expect = 2e-05
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 95  PKVTIPEPTRCLHSSWGTNPHFRGSYS 121
               +P+P   + S W  +P  RGSYS
Sbjct: 82  GSSAVPQPKETVVSRWRADPWARGSYS 108


>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays)
           [TaxId: 4577]}
          Length = 112

 Score = 39.0 bits (90), Expect = 3e-05
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 95  PKVTIPEPTRCLHSSWGTNPHFRGSYS 121
           P   +P+ T  L   W ++  ++G++S
Sbjct: 85  PGKDVPDATDILVPRWWSDRFYKGTFS 111


>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 112

 Score = 37.9 bits (87), Expect = 1e-04
 Identities = 5/34 (14%), Positives = 9/34 (26%)

Query: 88  AQADNHGPKVTIPEPTRCLHSSWGTNPHFRGSYS 121
                    +   EP      +W    +  G Y+
Sbjct: 77  ELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYT 110


>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
           mays) [TaxId: 4577]}
          Length = 347

 Score = 33.8 bits (75), Expect = 0.008
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 148 PVLLFAGEATSEHQYSTVNGAVETGWREADRIL 180
             + F GE TSEH    V+GA  +G   A+ ++
Sbjct: 307 GRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILI 339


>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper
           (Calloselasma rhodostoma) [TaxId: 8717]}
          Length = 113

 Score = 30.5 bits (68), Expect = 0.042
 Identities = 2/22 (9%), Positives = 6/22 (27%)

Query: 100 PEPTRCLHSSWGTNPHFRGSYS 121
                 +   W  + +  G  +
Sbjct: 91  SFCYPSVIQKWSLDKYAMGGIT 112


>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score = 30.5 bits (67), Expect = 0.098
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 150 LLFAGEATSEHQYSTVNGAVETGWREADRIL 180
           + FAG  T+ H    + GAVE G R A  IL
Sbjct: 304 IYFAGTETATHWSGYMEGAVEAGERAAREIL 334


>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
           pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
          Length = 370

 Score = 27.4 bits (59), Expect = 1.2
 Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 152 FAGEATSEHQYSTVNGAVETGWREADRI 179
           FAGE T++  +  ++  +++G R A  +
Sbjct: 338 FAGEYTAQA-HGWIDSTIKSGLRAARDV 364


>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain
          {Archaeon Methanopyrus kandleri [TaxId: 2320]}
          Length = 159

 Score = 25.1 bits (54), Expect = 4.3
 Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 33 PEKHKLIIVGAGAIAE----NRQKNGRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEA 88
               +++VGAG + +    +    G         T +R+  L +     ++      + 
Sbjct: 22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDH 81

Query: 89 QADNH 93
           A + 
Sbjct: 82 LARSD 86


>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor
          (AIF) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 213

 Score = 25.4 bits (54), Expect = 4.7
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 32 APEKHKLIIVGAGAIA 47
          AP     +++G G  A
Sbjct: 1  APSHVPFLLIGGGTAA 16


>d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus
          thermophilus [TaxId: 274]}
          Length = 347

 Score = 25.3 bits (54), Expect = 5.1
 Identities = 12/50 (24%), Positives = 18/50 (36%)

Query: 39 IIVGAGAIAENRQKNGRNLSKSGQNTAKRSNHLNQTFCVASLSHLRTGEA 88
          I+VG G + E     G       +     +  + +   V  L  L  GEA
Sbjct: 14 ILVGEGVLKEVPPLAGPAALLFDRRVEGFAQEVAKALGVRHLLGLPGGEA 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.408 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 678,259
Number of extensions: 28179
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 14
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.6 bits)