BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13545
         (87 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2C46|A Chain A, Crystal Structure Of The Human Rna Guanylyltransferase And
           5'-Phosphatase
 pdb|2C46|B Chain B, Crystal Structure Of The Human Rna Guanylyltransferase And
           5'-Phosphatase
 pdb|2C46|C Chain C, Crystal Structure Of The Human Rna Guanylyltransferase And
           5'-Phosphatase
 pdb|2C46|D Chain D, Crystal Structure Of The Human Rna Guanylyltransferase And
           5'-Phosphatase
          Length = 241

 Score = 29.6 bits (65), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 21  PLPTMLWKRYTATTGSSD-LHVRDLAIF-----ITMGIVVSSFGLPLIMSRAPVLEP--- 71
           PL TML  RY +     +  H   L+ +     + MG++V          R  + +    
Sbjct: 48  PLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIK 107

Query: 72  ---LKCKGHPNCKETEN 85
              L+CKGH  C  TEN
Sbjct: 108 YIKLQCKGHGECPTTEN 124


>pdb|1I9T|A Chain A, Crystal Structure Of The Oxidized Rna Triphosphatase
           Domain Of Mouse Mrna Capping Enzyme
          Length = 210

 Score = 26.6 bits (57), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 21  PLPTMLWKRYTATTGSSD-LHVRDLAIF-----ITMGIVVSSFGLPLIMSRAPVLEP--- 71
           PL TML  RY +     +  H   L+ +     + M ++V          R  + +    
Sbjct: 26  PLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKMSLLVDLTNTSRFYDRNDIEKEGIK 85

Query: 72  ---LKCKGHPNCKETEN 85
              L+CKGH  C  TEN
Sbjct: 86  YIKLQCKGHGECPTTEN 102


>pdb|1I9S|A Chain A, Crystal Structure Of The Rna Triphosphatase Domain Of
           Mouse Mrna Capping Enzyme
          Length = 210

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 21  PLPTMLWKRYTATTGSSD-LHVRDLAIF-----ITMGIVVSSFGLPLIMSRAPVLEP--- 71
           PL TML  RY +     +  H   L+ +     + M ++V          R  + +    
Sbjct: 26  PLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKMSLLVDLTNTSRFYDRNDIEKEGIK 85

Query: 72  ---LKCKGHPNCKETEN 85
              L+CKGH  C  TEN
Sbjct: 86  YIKLQCKGHGECPTTEN 102


>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
           Complexed With Emdf
 pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
           Complexed With Emdf
          Length = 318

 Score = 25.4 bits (54), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 35  GSSDLHVRDLAIFITMGIVVSSFGLPLIMSRAPVLEPLKCKGH 77
           G  D H + + +   + +V+S+   P I+ +  +LE +K  G+
Sbjct: 65  GELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGN 107


>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
 pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
 pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
 pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
 pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
 pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
 pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
 pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
          Length = 318

 Score = 25.4 bits (54), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 35  GSSDLHVRDLAIFITMGIVVSSFGLPLIMSRAPVLEPLKCKGH 77
           G  D H + + +   + +V+S+   P I+ +  +LE +K  G+
Sbjct: 65  GELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGN 107


>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
 pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
          Length = 314

 Score = 25.4 bits (54), Expect = 7.5,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 35  GSSDLHVRDLAIFITMGIVVSSFGLPLIMSRAPVLEPLKCKGH 77
           G  D H + + +   + +V+S+   P I+ +  +LE +K  G+
Sbjct: 61  GELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGN 103


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,669,216
Number of Sequences: 62578
Number of extensions: 80434
Number of successful extensions: 153
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 8
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)