Query psy13545
Match_columns 87
No_of_seqs 107 out of 179
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 22:01:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 34.5 39 0.0013 24.8 3.7 29 1-29 306-335 (339)
2 1v54_L VIIIA, cytochrome C oxi 29.4 64 0.0022 18.0 3.2 22 45-67 22-43 (47)
3 2y69_L Cytochrome C oxidase su 27.4 68 0.0023 19.0 3.2 23 44-67 37-59 (63)
4 1nkz_B Light-harvesting protei 24.7 90 0.0031 17.1 3.2 23 40-65 7-30 (41)
5 1lgh_B LH II, B800/850, light 20.9 1.2E+02 0.004 17.0 3.2 23 40-65 12-35 (45)
6 2iub_A CORA, divalent cation t 20.5 45 0.0015 24.7 1.8 21 9-29 339-359 (363)
7 1wrg_A LH-1, light-harvesting 19.2 1.3E+02 0.0043 17.5 3.2 24 40-66 15-39 (55)
8 2efe_A Similarity to vacuolar 18.3 1.7E+02 0.0056 20.9 4.4 44 8-56 189-237 (267)
9 1dx7_A Light-harvesting protei 16.5 1.3E+02 0.0046 17.0 2.8 24 40-66 15-39 (48)
10 3bua_E HSNM1B, DNA cross-LINK 12.3 87 0.003 16.8 1.1 22 14-35 7-28 (36)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=34.50 E-value=39 Score=24.80 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=15.0
Q ss_pred CCCC-ccchHHHHHHHHHHHhhhhHHhhhc
Q psy13545 1 MPGN-YKAWYPLSVILFYILAPLPTMLWKR 29 (87)
Q Consensus 1 ~~~l-~~nw~PL~vvl~yvLAPlP~~i~~r 29 (87)
||.+ +...||+..+++.+++-++.+++||
T Consensus 306 mPel~~~~gy~~~l~~m~~~~~~~~~~fkr 335 (339)
T 4ev6_A 306 LPLANNPQGFWLVMALMVVIIMIFVYIFRR 335 (339)
T ss_dssp CTTSSCTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 3333555555555555555555554
No 2
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=29.43 E-value=64 Score=18.04 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhhHHHHHhhcC
Q psy13545 45 AIFITMGIVVSSFGLPLIMSRAP 67 (87)
Q Consensus 45 ~~FlTg~lVvSg~aLPiVLaH~~ 67 (87)
...+++ ...+||++|.+..+-+
T Consensus 22 ~~~~~~-f~g~GF~~PF~i~~~Q 43 (47)
T 1v54_L 22 LAMMTL-FFGSGFAAPFFIVRHQ 43 (47)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHhHHHHHHHH
Confidence 333444 7789999999876543
No 3
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=27.35 E-value=68 Score=19.00 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhcC
Q psy13545 44 LAIFITMGIVVSSFGLPLIMSRAP 67 (87)
Q Consensus 44 ~~~FlTg~lVvSg~aLPiVLaH~~ 67 (87)
+..+++ +...+||++|.+.++-+
T Consensus 37 ~~~~~~-~f~g~GF~~PF~i~~~Q 59 (63)
T 2y69_L 37 LLAMMT-LFFGSGFAAPFFIVRHQ 59 (63)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHhhhHHHHHHH
Confidence 555555 57889999999876543
No 4
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=24.69 E-value=90 Score=17.15 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=18.4
Q ss_pred hHHHH-HHHHHHHHHHHhhhHHHHHhh
Q psy13545 40 HVRDL-AIFITMGIVVSSFGLPLIMSR 65 (87)
Q Consensus 40 ~~~d~-~~FlTg~lVvSg~aLPiVLaH 65 (87)
..+|+ +.|++|+.+..++|+ +||
T Consensus 7 EA~EfH~~~~~~~~~F~~iA~---vAH 30 (41)
T 1nkz_B 7 QSEELHKYVIDGTRVFLGLAL---VAH 30 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 57888 889999999888874 555
No 5
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=20.92 E-value=1.2e+02 Score=17.04 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=18.8
Q ss_pred hHHHH-HHHHHHHHHHHhhhHHHHHhh
Q psy13545 40 HVRDL-AIFITMGIVVSSFGLPLIMSR 65 (87)
Q Consensus 40 ~~~d~-~~FlTg~lVvSg~aLPiVLaH 65 (87)
..+|+ +.|++|+.+..++|+ +||
T Consensus 12 EA~EfH~~~~~~~~~F~~iA~---vAH 35 (45)
T 1lgh_B 12 EAIAVHDQFKTTFSAFIILAA---VAH 35 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 67888 899999999888874 555
No 6
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=20.47 E-value=45 Score=24.74 Aligned_cols=21 Identities=19% Similarity=0.550 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhhhhHHhhhc
Q psy13545 9 YPLSVILFYILAPLPTMLWKR 29 (87)
Q Consensus 9 ~PL~vvl~yvLAPlP~~i~~r 29 (87)
||...+++.+++-++.+++||
T Consensus 339 y~~~l~~m~~i~~~~~~~Fkr 359 (363)
T 2iub_A 339 YPVVLAVMGVIAVIMVVYFKK 359 (363)
T ss_dssp CHHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544
No 7
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=19.20 E-value=1.3e+02 Score=17.51 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=18.9
Q ss_pred hHHHH-HHHHHHHHHHHhhhHHHHHhhc
Q psy13545 40 HVRDL-AIFITMGIVVSSFGLPLIMSRA 66 (87)
Q Consensus 40 ~~~d~-~~FlTg~lVvSg~aLPiVLaH~ 66 (87)
..+|+ ..|++|+.+..++|+ +||-
T Consensus 15 EAqEfH~~f~~~~~~F~~iAv---vAH~ 39 (55)
T 1wrg_A 15 EAKEFHKIFTSSILVFFGVAA---FAHL 39 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 46777 889999999888874 5664
No 8
>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*
Probab=18.35 E-value=1.7e+02 Score=20.93 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHhhhhHHhh-----hccCCCCCCCchhHHHHHHHHHHHHHHHh
Q psy13545 8 WYPLSVILFYILAPLPTMLW-----KRYTATTGSSDLHVRDLAIFITMGIVVSS 56 (87)
Q Consensus 8 w~PL~vvl~yvLAPlP~~i~-----~r~~~~~d~~~~~~~d~~~FlTg~lVvSg 56 (87)
..|+++.++ +=|.+|++.+ ++..+.+. ..-+.|+++|.+-.+-.
T Consensus 189 ~LP~Liyvv-ika~~~~L~s~l~yI~~f~~~~~----l~gE~gY~lt~l~aA~~ 237 (267)
T 2efe_A 189 FLPVLIYVT-IKANPPQLHSNLLYIQRYRRESK----LVGEAAYFFTNILSAES 237 (267)
T ss_dssp HHHHHHHHH-HHHCCTTHHHHHHHHHHHSCTTT----SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhcCcccHHHHHHHHHHHcCccc----cCCHHHHHHHHHHHHHH
Confidence 455555444 4478888875 33333221 22488999998876544
No 9
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=16.46 E-value=1.3e+02 Score=16.95 Aligned_cols=24 Identities=8% Similarity=0.332 Sum_probs=19.1
Q ss_pred hHHHH-HHHHHHHHHHHhhhHHHHHhhc
Q psy13545 40 HVRDL-AIFITMGIVVSSFGLPLIMSRA 66 (87)
Q Consensus 40 ~~~d~-~~FlTg~lVvSg~aLPiVLaH~ 66 (87)
..+|+ +.|++|+.+..++|+ +||-
T Consensus 15 EA~EfH~~~~~~~~~F~~iA~---vAH~ 39 (48)
T 1dx7_A 15 QAQELHSVYMSGLWLFSAVAI---VAHL 39 (48)
T ss_dssp HHHHHTHHHHHHHHHHTTHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 57888 899999999888874 5553
No 10
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=12.32 E-value=87 Score=16.82 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=14.6
Q ss_pred HHHHHHhhhhHHhhhccCCCCC
Q psy13545 14 ILFYILAPLPTMLWKRYTATTG 35 (87)
Q Consensus 14 vl~yvLAPlP~~i~~r~~~~~d 35 (87)
.+=|+|.|+-++=++..+.++|
T Consensus 7 ALKYLLTPv~~l~a~~Ssr~FD 28 (36)
T 3bua_E 7 ALKYLLTPVNFFQAGYSSRRFD 28 (36)
T ss_pred HHHHHhhhHHHHhcccchhhHH
Confidence 4669999987766655544443
Done!