Query psy13545
Match_columns 87
No_of_seqs 107 out of 179
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 22:01:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13545.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13545hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54l_ f.23.6.1 (L:) Mitochon 38.9 9.2 0.00067 20.5 2.1 30 37-69 15-44 (46)
2 d1lghb_ f.3.1.1 (B:) Light-har 20.5 46 0.0033 17.3 2.8 23 40-65 10-33 (43)
3 d1jo5a_ f.3.1.1 (A:) Light-har 12.8 54 0.0039 17.3 1.9 23 40-65 15-38 (48)
4 d1rh1a2 f.1.1.1 (A:313-511) Co 10.8 36 0.0026 22.9 0.8 11 5-15 125-135 (199)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 9.1 1.8E+02 0.013 18.0 3.8 26 40-65 167-196 (199)
6 d1cola_ f.1.1.1 (A:) Colicin A 8.2 53 0.0038 22.0 0.8 12 5-16 123-134 (197)
7 d1ciia1 f.1.1.1 (A:451-624) Co 7.2 62 0.0045 21.2 0.8 10 5-14 111-120 (174)
8 d1wt8a1 g.3.7.2 (A:1-31) Bmkx 7.0 50 0.0036 15.8 0.1 10 73-82 15-24 (31)
9 d1iaza_ b.97.1.1 (A:) Equinato 6.4 47 0.0034 21.9 -0.2 7 4-10 108-114 (175)
10 d1a87a_ f.1.1.1 (A:) Colicin N 6.2 75 0.0054 22.6 0.8 12 5-16 221-232 (297)
No 1
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=38.89 E-value=9.2 Score=20.53 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=20.6
Q ss_pred CchhHHHHHHHHHHHHHHHhhhHHHHHhhcCcc
Q psy13545 37 SDLHVRDLAIFITMGIVVSSFGLPLIMSRAPVL 69 (87)
Q Consensus 37 ~~~~~~d~~~FlTg~lVvSg~aLPiVLaH~~iI 69 (87)
.| -|+=++.| .....||||+|.+.-|-++.
T Consensus 15 ~N-k~rLla~m--~~~fGsgfa~PF~ivRhqLl 44 (46)
T d1v54l_ 15 EN-KWRLLAMM--TLFFGSGFAAPFFIVRHQLL 44 (46)
T ss_dssp SS-HHHHHHHH--HHHHHHHHHHHHHHHHHHHT
T ss_pred hh-HHHHHHHH--HHHHhccccchHHHHHHHHh
Confidence 45 56655554 35568999999988776554
No 2
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=20.50 E-value=46 Score=17.26 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=18.5
Q ss_pred hHHHH-HHHHHHHHHHHhhhHHHHHhh
Q psy13545 40 HVRDL-AIFITMGIVVSSFGLPLIMSR 65 (87)
Q Consensus 40 ~~~d~-~~FlTg~lVvSg~aLPiVLaH 65 (87)
..+|+ +.|++|+.+-.++| |.||
T Consensus 10 EA~EfH~~~~~g~~~F~~iA---vvAH 33 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILA---AVAH 33 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 57888 89999999888887 4555
No 3
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.83 E-value=54 Score=17.33 Aligned_cols=23 Identities=9% Similarity=0.364 Sum_probs=18.3
Q ss_pred hHHHH-HHHHHHHHHHHhhhHHHHHhh
Q psy13545 40 HVRDL-AIFITMGIVVSSFGLPLIMSR 65 (87)
Q Consensus 40 ~~~d~-~~FlTg~lVvSg~aLPiVLaH 65 (87)
..+|+ +.|++|+.+-.++|+ .||
T Consensus 15 EA~E~H~~~~~g~~~F~~iAv---vAH 38 (48)
T d1jo5a_ 15 QAQELHSVYMSGLWLFSAVAI---VAH 38 (48)
T ss_dssp HHHHHHHHHHHTTTHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 57888 899999988888874 555
No 4
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.85 E-value=36 Score=22.91 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=8.6
Q ss_pred ccchHHHHHHH
Q psy13545 5 YKAWYPLSVIL 15 (87)
Q Consensus 5 ~~nw~PL~vvl 15 (87)
-+||-||++=+
T Consensus 125 TgNWrPl~vk~ 135 (199)
T d1rh1a2 125 TGNWGPLMLEV 135 (199)
T ss_dssp SSCCHHHHHHH
T ss_pred CCCchhHHHHH
Confidence 47999998754
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.12 E-value=1.8e+02 Score=17.96 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHhhh----HHHHHhh
Q psy13545 40 HVRDLAIFITMGIVVSSFG----LPLIMSR 65 (87)
Q Consensus 40 ~~~d~~~FlTg~lVvSg~a----LPiVLaH 65 (87)
-.+|+|..+..++.+|-+. +|..+++
T Consensus 167 ~~~~~g~~i~~gv~~s~i~al~llPall~~ 196 (199)
T d1iwga7 167 IYRQFSITIVSAMALSVLVALILTPALCAT 196 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888888887777665 6777764
No 6
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=8.19 E-value=53 Score=22.04 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=8.9
Q ss_pred ccchHHHHHHHH
Q psy13545 5 YKAWYPLSVILF 16 (87)
Q Consensus 5 ~~nw~PL~vvl~ 16 (87)
-+||-||++=+=
T Consensus 123 TGnW~Pl~l~~E 134 (197)
T d1cola_ 123 TGNWGPLMLEVE 134 (197)
T ss_dssp HCCCHHHHHHHH
T ss_pred CCCchHHHHHHH
Confidence 379999987543
No 7
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=7.22 E-value=62 Score=21.25 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=7.8
Q ss_pred ccchHHHHHH
Q psy13545 5 YKAWYPLSVI 14 (87)
Q Consensus 5 ~~nw~PL~vv 14 (87)
-+||-||++=
T Consensus 111 TGNW~Pl~l~ 120 (174)
T d1ciia1 111 TENWRPLFVK 120 (174)
T ss_dssp STTCHHHHHH
T ss_pred CCCcHHHHHH
Confidence 4799998864
No 8
>d1wt8a1 g.3.7.2 (A:1-31) Bmkx {Chinese scorpion (Buthus martensi karsch) [TaxId: 34649]}
Probab=6.98 E-value=50 Score=15.81 Aligned_cols=10 Identities=30% Similarity=0.570 Sum_probs=7.3
Q ss_pred ceeeeccccc
Q psy13545 73 KCKGHPNCKE 82 (87)
Q Consensus 73 A~~msi~~~~ 82 (87)
-|.+.|+||.
T Consensus 15 mcglgisckn 24 (31)
T d1wt8a1 15 MCGLGISCKN 24 (31)
T ss_dssp GGSSCCCCCS
T ss_pred EeccceeecC
Confidence 3677888885
No 9
>d1iaza_ b.97.1.1 (A:) Equinatoxin II (eqtII, tenebrosin C) {European sea anemone (Actinia equina) [TaxId: 6106]}
Probab=6.45 E-value=47 Score=21.94 Aligned_cols=7 Identities=29% Similarity=1.018 Sum_probs=4.4
Q ss_pred CccchHH
Q psy13545 4 NYKAWYP 10 (87)
Q Consensus 4 l~~nw~P 10 (87)
+|+|||-
T Consensus 108 lYsNW~~ 114 (175)
T d1iaza_ 108 WYSNWWN 114 (175)
T ss_dssp TCCCEEE
T ss_pred hhhhhee
Confidence 5677763
No 10
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=6.18 E-value=75 Score=22.55 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=9.1
Q ss_pred ccchHHHHHHHH
Q psy13545 5 YKAWYPLSVILF 16 (87)
Q Consensus 5 ~~nw~PL~vvl~ 16 (87)
-+||-||++=+=
T Consensus 221 TGNWrPL~vklE 232 (297)
T d1a87a_ 221 TGNWGPLLLEVE 232 (297)
T ss_dssp TCCCHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 479999987543
Done!