RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13545
(87 letters)
>gnl|CDD|217917 pfam04133, Vps55, Vacuolar protein sorting 55. Vps55 is involved
in the secretion of the Golgi form of the soluble
vacuolar carboxypeptidase Y, but not the trafficking of
the membrane-bound vacuolar alkaline phosphatase. Both
Vps55 and obesity receptor gene-related protein are
important for functioning membrane trafficking to the
vacuole/lysosome of eukaryotic cells.
Length = 120
Score = 72.2 bits (178), Expect = 3e-18
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 5 YKAWYPLSVILFYILAPLPTMLWKRYTATTG--SSDLHVRDLAIFITMGIVVSSFGLPLI 62
Y W+PL V+LFY+LAPLP ++ +R ++ + S ++ D F+T +VVS F LP++
Sbjct: 22 YNNWWPLFVVLFYVLAPLPNLIARRCSSDSDFSSESGNLIDFGKFLTGALVVSGFALPIV 81
Query: 63 MSRAPVLEPLKC 74
++ A ++ C
Sbjct: 82 LAHAGLIGWGAC 93
>gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional.
Length = 591
Score = 27.5 bits (61), Expect = 0.77
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 38 DLHVRDLAIFITMGIVVSSFGLP 60
+L RDL+ T+GI V F LP
Sbjct: 58 NLTQRDLSTITTVGIAVGYFLLP 80
>gnl|CDD|220496 pfam09972, DUF2207, Predicted membrane protein (DUF2207). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 503
Score = 26.9 bits (60), Expect = 1.4
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 4 NYKAWYPLSVILFYILAPLPTMLWKRY 30
PL ++L +L +P ++W +Y
Sbjct: 226 LLLILLPLLLVLLILLILIPYLIWLKY 252
>gnl|CDD|223754 COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell
envelope biogenesis, outer membrane].
Length = 287
Score = 26.5 bits (59), Expect = 1.7
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 8 WYPLSVILFYILAPLPTMLWKRYTATTGSSDLHVRDLAIFITMGIVV 54
WY L +L +LA + KR G +D D ++ +G ++
Sbjct: 25 WYGLMYVLGILLAYW--LARKRARKPGGITDDDFEDFILWAVLGGII 69
>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha.
A small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, and in principle may run in either direction. This
model represents the F1 alpha subunit of this apparent
second ATP synthase.
Length = 497
Score = 25.9 bits (57), Expect = 3.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 60 PLIMSRAPVLEPLK 73
P IM RAPV PL+
Sbjct: 134 PPIMDRAPVTVPLQ 147
>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is typically
between 323 to 339 amino acids in length. This domain is
found associated with pfam01841. This domain has a
conserved PLW sequence motif. This domain contains 6
transmembrane helices.
Length = 321
Score = 25.6 bits (57), Expect = 4.0
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 10 PLSVILFYI---LAPLPTMLWKRYTATTGSSD 38
PL+++LF + LAPL + +A TG SD
Sbjct: 165 PLALVLFLLFPRLAPLWGVPQDAKSARTGLSD 196
>gnl|CDD|215237 PLN02433, PLN02433, uroporphyrinogen decarboxylase.
Length = 345
Score = 24.9 bits (55), Expect = 5.8
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 5 YKAWYPLSVILFY-ILAPLPTM 25
++A+ P VILF IL PLP M
Sbjct: 56 WRAFKPDGVILFSDILTPLPAM 77
>gnl|CDD|163441 TIGR03729, acc_ester, putative phosphoesterase. Members of this
protein family belong to the larger family pfam00149
(calcineurin-like phosphoesterase), a family largely
defined by small motifs of metal-chelating residues. The
subfamily in this model shows a good but imperfect
co-occurrence in species with domain TIGR03715 that
defines a novel class of signal peptide typical of the
accessory secretory system.
Length = 239
Score = 24.6 bits (54), Expect = 7.2
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 17 YILAPLPTMLWKRYTATTGSSDLH 40
+I P+ + + A GS
Sbjct: 179 FIYVPMDHRRFDMFNAFLGSQHFG 202
>gnl|CDD|235190 PRK03991, PRK03991, threonyl-tRNA synthetase; Validated.
Length = 613
Score = 24.4 bits (54), Expect = 8.2
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 36 SSDLHVRDLAIFITMGI--VVSSFGLPLIMSRAP-----VLEPLKCKGHP 78
SSDL A+ + + + S G + RAP + + CKGHP
Sbjct: 84 SSDLASPKTAVEVLKKLEEELKSEGYEV--LRAPFGWYKAFK-ISCKGHP 130
>gnl|CDD|225609 COG3067, NhaB, Na+/H+ antiporter [Inorganic ion transport and
metabolism].
Length = 516
Score = 24.7 bits (54), Expect = 8.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 3 GNYKAWYPLSVILFYILAPL 22
G WY L++I F I+ PL
Sbjct: 15 GQSPDWYKLAIIAFLIINPL 34
>gnl|CDD|181942 PRK09547, nhaB, sodium/proton antiporter; Reviewed.
Length = 513
Score = 24.5 bits (54), Expect = 8.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 3 GNYKAWYPLSVILFYILAPL 22
G WY L++I F I+ PL
Sbjct: 15 GQSPDWYKLAIIAFLIINPL 34
>gnl|CDD|225524 COG2977, EntD, Phosphopantetheinyl transferase component of
siderophore synthetase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 228
Score = 24.2 bits (53), Expect = 9.5
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 5 YKAWYPLSVILFY 17
+KA YPL
Sbjct: 165 FKALYPLVKRWLG 177
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.444
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,415,606
Number of extensions: 346421
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 29
Length of query: 87
Length of database: 10,937,602
Length adjustment: 55
Effective length of query: 32
Effective length of database: 8,498,132
Effective search space: 271940224
Effective search space used: 271940224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)