RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13545
         (87 letters)



>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division),
           ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear
           protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP:
           a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B*
           1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B*
           2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B*
           2x1n_B* 1vyw_B* ...
          Length = 260

 Score = 26.1 bits (58), Expect = 1.6
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 11  LSVILFYILAPLPTMLWKRYTATTGSSDLHVRDLAIFI 48
           L V+ F + AP       +Y      ++  V  LA+F+
Sbjct: 127 LKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFL 164


>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5-
           helix bundle domain, raction intermediate; HET: ARG;
           1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A*
          Length = 410

 Score = 24.8 bits (53), Expect = 4.4
 Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 13/60 (21%)

Query: 1   MPGNYKAWYPLSVILFYILAPLPTMLWKRYTATTGSSDLHVRDLAIFITMGIVVSSFGLP 60
           M G  K    +      I+ P+P + +              RD    +  G+ +      
Sbjct: 132 MAGITKYDLGIEADHELIVDPMPNLYF-------------TRDPFASVGNGVTIHYMRYK 178


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.138    0.444 

Gapped
Lambda     K      H
   0.267   0.0794    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,311,318
Number of extensions: 61656
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 5
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)