BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13546
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35979|RL12_MOUSE 60S ribosomal protein L12 OS=Mus musculus GN=Rpl12 PE=1 SV=2
Length = 165
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/97 (88%), Positives = 90/97 (92%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
MPPKFDP EVK VYLRC GGEVGATS+LAPKIGPLGLSPKKVGDDIAKATGDWKGL+ITV
Sbjct: 1 MPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60
Query: 61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
LTIQNRQA I VVPSA++LIIKALKEPPRDRKK KN
Sbjct: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKN 97
>sp|P30050|RL12_HUMAN 60S ribosomal protein L12 OS=Homo sapiens GN=RPL12 PE=1 SV=1
Length = 165
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/97 (87%), Positives = 90/97 (92%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
MPPKFDP E+K VYLRC GGEVGATS+LAPKIGPLGLSPKKVGDDIAKATGDWKGL+ITV
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60
Query: 61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
LTIQNRQA I VVPSA++LIIKALKEPPRDRKK KN
Sbjct: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKN 97
>sp|E2RR58|RL12_CANFA 60S ribosomal protein L12 OS=Canis familiaris GN=RPL12 PE=1 SV=1
Length = 165
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/97 (87%), Positives = 90/97 (92%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
MPPKFDP E+K VYLRC GGEVGATS+LAPKIGPLGLSPKKVGDDIAKATGDWKGL+ITV
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60
Query: 61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
LTIQNRQA I VVPSA++LIIKALKEPPRDRKK KN
Sbjct: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKN 97
>sp|P61284|RL12_BOVIN 60S ribosomal protein L12 OS=Bos taurus GN=RPL12 PE=2 SV=1
Length = 165
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/97 (87%), Positives = 90/97 (92%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
MPPKFDP E+K VYLRC GGEVGATS+LAPKIGPLGLSPKKVGDDIAKATGDWKGL+ITV
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60
Query: 61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
LTIQNRQA I VVPSA++LIIKALKEPPRDRKK KN
Sbjct: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKN 97
>sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12 OS=Chinchilla lanigera GN=RPL12 PE=2
SV=1
Length = 165
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/97 (87%), Positives = 90/97 (92%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
MPPKFDP E+K VYLRC GGEVGATS+LAPKIGPLGLSPKKVGDDIAKATGDWKGL+ITV
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60
Query: 61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
LTIQNRQA I VVPSA++LIIKALKEPPRDRKK KN
Sbjct: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKN 97
>sp|P23358|RL12_RAT 60S ribosomal protein L12 OS=Rattus norvegicus GN=Rpl12 PE=2 SV=1
Length = 165
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/97 (87%), Positives = 90/97 (92%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
MPPKFDP E+K VYLRC GGEVGATS+LAPKIGPLGLSPKKVGDDIAKATGDWKGL+ITV
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60
Query: 61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
LTIQNRQA I VVPSA++LIIKALKEPPRDRKK KN
Sbjct: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKN 97
>sp|P61866|RL12_CAEEL 60S ribosomal protein L12 OS=Caenorhabditis elegans GN=rpl-12
PE=3 SV=1
Length = 165
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/97 (84%), Positives = 89/97 (91%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
MPPKFDPTE+K VYLRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T
Sbjct: 1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60
Query: 61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
LTIQNR A I VVPSAASLI+K LKEPPRDRKKVKN
Sbjct: 61 KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKN 97
>sp|P61865|RL12_CAEBR 60S ribosomal protein L12 OS=Caenorhabditis briggsae GN=rpl-12
PE=3 SV=1
Length = 165
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/97 (84%), Positives = 89/97 (91%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
MPPKFDPTE+K VYLRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T
Sbjct: 1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60
Query: 61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
LTIQNR A I VVPSAASLI+K LKEPPRDRKKVKN
Sbjct: 61 KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKN 97
>sp|Q9C285|RL12_NEUCR 60S ribosomal protein L12 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rpl-12 PE=3 SV=1
Length = 165
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/97 (80%), Positives = 90/97 (92%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
MPPKFDP EVK + LR GGEVGA+S+LAPKIGPLGLSPKKVG+DIAKATGDWKGL++TV
Sbjct: 1 MPPKFDPNEVKVITLRATGGEVGASSALAPKIGPLGLSPKKVGEDIAKATGDWKGLRVTV 60
Query: 61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
LTIQNRQAA+SVVP+A++L+I+ALKEPPRDRKK KN
Sbjct: 61 KLTIQNRQAAVSVVPTASALVIRALKEPPRDRKKEKN 97
>sp|O75000|RL12_SCHPO 60S ribosomal protein L12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl1201 PE=1 SV=1
Length = 165
Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 76/97 (78%), Positives = 87/97 (89%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
MPPKFDP EVK +++R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
LTIQNRQAA+SVVPSA++L+IKALKEP RDRKK KN
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKN 97
>sp|P0CX54|RL12B_YEAST 60S ribosomal protein L12-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL12B PE=1 SV=1
Length = 165
Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 77/97 (79%), Positives = 88/97 (90%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
MPPKFDP EVK +YLR VGGEVGA+++LAPKIGPLGLSPKKVG+DIAKAT ++KG+K+TV
Sbjct: 1 MPPKFDPNEVKYLYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKATKEFKGIKVTV 60
Query: 61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
L IQNRQAA SVVPSA+SL+I ALKEPPRDRKK KN
Sbjct: 61 QLKIQNRQAAASVVPSASSLVITALKEPPRDRKKDKN 97
>sp|P0CX53|RL12A_YEAST 60S ribosomal protein L12-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL12A PE=1 SV=1
Length = 165
Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 77/97 (79%), Positives = 88/97 (90%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
MPPKFDP EVK +YLR VGGEVGA+++LAPKIGPLGLSPKKVG+DIAKAT ++KG+K+TV
Sbjct: 1 MPPKFDPNEVKYLYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKATKEFKGIKVTV 60
Query: 61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
L IQNRQAA SVVPSA+SL+I ALKEPPRDRKK KN
Sbjct: 61 QLKIQNRQAAASVVPSASSLVITALKEPPRDRKKDKN 97
>sp|O50003|RL12_PRUAR 60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1
Length = 166
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/98 (76%), Positives = 86/98 (87%), Gaps = 1/98 (1%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATG-DWKGLKIT 59
MPPKFDP++V VY+R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T DWKGL++T
Sbjct: 1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVT 60
Query: 60 VCLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
V LT+QNRQA +SVVPSAA+L+IKALKEP RDRKK KN
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKN 98
>sp|Q9LFH5|RL122_ARATH 60S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B
PE=1 SV=1
Length = 166
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 86/98 (87%), Gaps = 1/98 (1%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATG-DWKGLKIT 59
MPPK DP+++ VY+R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 60 VCLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
V LT+QNRQA ++VVPSAA+L+IKALKEP RDRKKVKN
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKN 98
>sp|P50883|RL121_ARATH 60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A
PE=1 SV=2
Length = 166
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 86/98 (87%), Gaps = 1/98 (1%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATG-DWKGLKIT 59
MPPK DP+++ VY+R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 60 VCLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
V LT+QNRQA ++VVPSAA+L+IKALKEP RDRKKVKN
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKN 98
>sp|Q9FF52|RL123_ARATH 60S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C
PE=2 SV=1
Length = 166
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 86/98 (87%), Gaps = 1/98 (1%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATG-DWKGLKIT 59
MPPK DP+++ VY+R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 60 VCLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
V LT+QNRQA ++VVPSAA+L+IKALKEP RDRKKVKN
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKN 98
>sp|Q54J50|RL12_DICDI 60S ribosomal protein L12 OS=Dictyostelium discoideum GN=rpl12
PE=1 SV=1
Length = 166
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/97 (71%), Positives = 82/97 (84%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
MPPK DP+E +V+LR GGE GA S+LAPK+GPLG+SPKKVGDDIAKAT WKG+K++V
Sbjct: 1 MPPKVDPSEKVEVFLRVCGGEAGAMSTLAPKLGPLGVSPKKVGDDIAKATQPWKGMKVSV 60
Query: 61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
LTIQNR A V+PSA++L+IKALKEPPRDRKK KN
Sbjct: 61 KLTIQNRIAVPEVLPSASALVIKALKEPPRDRKKEKN 97
>sp|P50884|RL12_CHLRE 60S ribosomal protein L12 (Fragment) OS=Chlamydomonas reinhardtii
GN=RPL12 PE=2 SV=1
Length = 157
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 76/89 (85%), Gaps = 1/89 (1%)
Query: 10 VKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT-GDWKGLKITVCLTIQNRQ 68
V +V +R GGEVG SSLAPKIGPLGLSPKK+G+DIAK T DWKGL+ITV LT+QNRQ
Sbjct: 1 VVEVCVRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQ 60
Query: 69 AAISVVPSAASLIIKALKEPPRDRKKVKN 97
A ISV+PSAA+L+IKALKEP RDRKK KN
Sbjct: 61 AKISVIPSAAALVIKALKEPARDRKKEKN 89
>sp|Q8SR84|RL12_ENCCU 60S ribosomal protein L12 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPL12 PE=1 SV=1
Length = 166
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 71/94 (75%), Gaps = 4/94 (4%)
Query: 5 FDPTEVKKVYLRCVGGEV-GATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLT 63
DP + K + L+ VGGEV GAT LA ++GPLGLS K VG+DI KAT D+K LK+ V L
Sbjct: 7 MDP-DTKYIKLQVVGGEVPGAT--LAQRVGPLGLSSKVVGEDIKKATADYKSLKVHVQLA 63
Query: 64 IQNRQAAISVVPSAASLIIKALKEPPRDRKKVKN 97
I++R+A + V PS A+LIIK+LKEPPRDRKK KN
Sbjct: 64 IKDRKATVEVQPSVATLIIKSLKEPPRDRKKEKN 97
>sp|B6YSX7|RL11_THEON 50S ribosomal protein L11P OS=Thermococcus onnurineus (strain
NA1) GN=rpl11p PE=3 SV=1
Length = 163
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 13 VYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQN---RQA 69
V + GG+ L P IGPLGL+ K+V D+I KAT D++G+++ V + +++ +
Sbjct: 5 VEVLVEGGKASPGPPLGPAIGPLGLNVKQVVDEINKATKDFEGMQVPVKIIVEDPKKKTF 64
Query: 70 AISV-VPSAASLIIKALKEP 88
I V VP + LI K L P
Sbjct: 65 RIEVGVPPVSQLIKKELGIP 84
>sp|O29712|RL11_ARCFU 50S ribosomal protein L11P OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rpl11p PE=3 SV=1
Length = 157
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 10 VKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQ-NRQ 68
V+ V + GG+ L P IGPLGL+ K+V D I +AT D++GL + V + ++ +R
Sbjct: 2 VQVVEVLVPGGQASPGPPLGPAIGPLGLNVKQVVDKINEATKDYEGLSVPVKIIVKDDRS 61
Query: 69 AAISV-VPSAASLIIKAL 85
I V +P ++LI + L
Sbjct: 62 FEIEVGIPPVSALIKREL 79
>sp|A3CSJ5|RL11_METMJ 50S ribosomal protein L11P OS=Methanoculleus marisnigri (strain
ATCC 35101 / DSM 1498 / JR1) GN=rpl11p PE=3 SV=1
Length = 158
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 19 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQA-AISV-VPS 76
GG+ A L P +GPLG++ K V DDI K T ++ G+++ V +T+ +++ I V +P
Sbjct: 11 GGKATAGPPLGPALGPLGINVKAVVDDINKKTAEFNGMQVPVTVTVDDKKNFTIEVGIPP 70
Query: 77 AASLIIK 83
+L++K
Sbjct: 71 TTALVMK 77
>sp|C5A426|RL11_THEGJ 50S ribosomal protein L11P OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=rpl11p PE=3 SV=1
Length = 165
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 13 VYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQN---RQA 69
V + GG+ L P IGPLGL+ K+V D+I KAT +++G+++ V + +++ +
Sbjct: 5 VEVLVEGGKASPGPPLGPAIGPLGLNVKQVVDEINKATKEFEGMQVPVKIIVEDPKKKTF 64
Query: 70 AISV-VPSAASLIIKAL 85
I V +P + LI K L
Sbjct: 65 RIEVGIPPTSQLIKKEL 81
>sp|Q8TZK0|RL11_PYRFU 50S ribosomal protein L11P OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl11p PE=1 SV=1
Length = 164
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 7 PTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQ- 65
P +V +V + GG+ L P IGPLGL+ K+V D I +AT D+ G+++ V + +
Sbjct: 2 PKQVVEVLVE--GGKATPGPPLGPAIGPLGLNVKQVVDKINEATKDFAGMQVPVKIIVDP 59
Query: 66 -NRQAAISV-VPSAASLIIKAL 85
+Q I V VP + LI K L
Sbjct: 60 VTKQFEIEVGVPPTSQLIKKEL 81
>sp|Q5JH34|RL11_PYRKO 50S ribosomal protein L11P OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=rpl11p PE=3 SV=1
Length = 165
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 13 VYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQN---RQA 69
V + GG+ L P IGPLGL+ K+V D+I KAT +++G+++ V + +++ +
Sbjct: 5 VEVLVEGGKASPGPPLGPAIGPLGLNVKQVVDEINKATKEFEGMQVPVKIIVEDPKKKTF 64
Query: 70 AISV-VPSAASLIIKALKEP 88
I V +P + LI K L P
Sbjct: 65 RIEVGIPPTSQLIKKELGIP 84
>sp|B8GIY2|RL11_METPE 50S ribosomal protein L11P OS=Methanosphaerula palustris (strain
ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl11p PE=3 SV=1
Length = 158
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 19 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQ-AAISV-VPS 76
GG A + P +GPLG++ K V DDI K T ++ G+++ V + + +++ ISV +P
Sbjct: 11 GGRATAGPPIGPALGPLGINVKAVVDDINKKTAEFNGMQVPVKIEVDDKKNVTISVGIPP 70
Query: 77 AASLIIKAL 85
+L++K +
Sbjct: 71 TTALVMKEV 79
>sp|Q9V2S3|RL11_PYRAB 50S ribosomal protein L11P OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl11p PE=3 SV=1
Length = 164
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 13 VYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQ--NRQAA 70
V + GG+ L P IGPLGL+ K+V D I +AT ++ G+++ V + + +Q
Sbjct: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQFE 65
Query: 71 ISV-VPSAASLIIKAL 85
I V VP + LI K L
Sbjct: 66 IEVGVPPTSQLIKKEL 81
>sp|O57779|RL11_PYRHO 50S ribosomal protein L11P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl11p PE=3 SV=1
Length = 164
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 13 VYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQ--NRQAA 70
V + GG+ L P IGPLGL+ K+V D I +AT ++ G+++ V + + +Q
Sbjct: 6 VEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKEFAGMQVPVKIIVDPVTKQFE 65
Query: 71 ISV-VPSAASLIIKAL 85
I V VP + LI K L
Sbjct: 66 IEVGVPPTSQLIKKEL 81
>sp|A2STU0|RL11_METLZ 50S ribosomal protein L11P OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rpl11p PE=3 SV=1
Length = 157
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 19 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQ-AAISV-VPS 76
GG A L P +GPLG++ K V DDI K T ++ G+ + V + + +++ ++V +P
Sbjct: 11 GGRATAGPPLGPALGPLGINVKAVVDDINKKTAEFNGMSVPVTVMVDDKKNVTLTVGIPP 70
Query: 77 AASLIIK 83
+L++K
Sbjct: 71 TTALVMK 77
>sp|Q2FQ31|RL11_METHJ 50S ribosomal protein L11P OS=Methanospirillum hungatei (strain
JF-1 / DSM 864) GN=rpl11p PE=3 SV=1
Length = 158
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 19 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTI-QNRQAAISV-VPS 76
GG+ A L P +GPLG++ K V D+I K T + G+++ V + + + + ISV +P
Sbjct: 11 GGKATAGPPLGPALGPLGINVKAVVDEINKKTASFNGMQVPVRVEVDEKKNFTISVGIPP 70
Query: 77 AASLIIK 83
+LI+K
Sbjct: 71 TTALIMK 77
>sp|A9A582|RL11_NITMS 50S ribosomal protein L11P OS=Nitrosopumilus maritimus (strain
SCM1) GN=rpl11p PE=3 SV=1
Length = 159
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 11 KKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLK--ITVCLTIQNRQ 68
+K+ GG A L P +GPLG++ +V + I T D++G+K +TV + ++
Sbjct: 4 QKISSLVTGGGASAGPPLGPALGPLGVNIMEVINAINDKTKDFEGMKVPVTVIVDSDTKK 63
Query: 69 AAISV-VPSAASLIIK 83
I + +PSAA+LI+K
Sbjct: 64 YEIEIGIPSAAALIMK 79
>sp|Q0W049|RL11_UNCMA 50S ribosomal protein L11P OS=Uncultured methanogenic archaeon
RC-I GN=rpl11p PE=3 SV=1
Length = 158
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 19 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQ-NRQAAISV-VPS 76
GG+ L P +GPLG++ KKV D+I T D+ G+ + V + + +R + V P
Sbjct: 11 GGKANPGPPLGPALGPLGINIKKVVDEINNKTKDYNGMTVPVKVIVDASRNFTVEVGTPP 70
Query: 77 AASLIIKALK 86
++L++ LK
Sbjct: 71 TSALVLSELK 80
>sp|P54030|RL11_METJA 50S ribosomal protein L11P OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=rpl11p PE=3 SV=1
Length = 161
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 13 VYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTI--QNRQAA 70
V + GG A L P IGPLG++ +V +I + T D++G+++ V + + + R+
Sbjct: 6 VEVLVTGGRATAGPPLGPAIGPLGVNVMQVVKEINEKTKDYEGMQVPVKVIVDTETRKFE 65
Query: 71 ISV-VPSAASLIIKAL 85
I V +P +LI K L
Sbjct: 66 IEVGIPPTTALIKKEL 81
>sp|Q8TX52|RL11_METKA 50S ribosomal protein L11P OS=Methanopyrus kandleri (strain AV19
/ DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl11p PE=3
SV=1
Length = 166
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 11 KKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTI--QNRQ 68
++V + GG+ L P +GPLG++ ++V ++I + T D+KG+++ V + + + R+
Sbjct: 4 EEVEVLIEGGKADPGPPLGPALGPLGVNIQEVVEEINRKTKDFKGMEVPVKIIVDTETRE 63
Query: 69 AAISVVPSAASLIIKA 84
+ V S IIK+
Sbjct: 64 FEVKVGSPPTSAIIKS 79
>sp|O27715|RL11_METTH 50S ribosomal protein L11P OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpl11p PE=3 SV=1
Length = 160
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 19 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTI--QNRQAAISV-VP 75
GG+ L P IGPLG++ +V ++I + T D++G+K+ V + + R + V P
Sbjct: 12 GGKATPGPPLGPAIGPLGINMMQVVEEINRKTADFEGMKVPVKIIVDTDTRDFEVEVGTP 71
Query: 76 SAASLIIKALK 86
+LI+ LK
Sbjct: 72 PTTALIMDELK 82
>sp|A2BN63|RL11_HYPBU 50S ribosomal protein L11P OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl11p PE=3 SV=1
Length = 168
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 10 VKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTI--QNR 67
++ + ++ GGE LAP I LGL KV +DI KAT +KG ++ V L + +
Sbjct: 3 IRVINVKVRGGEAKPAPPLAPAIEKLGLDVNKVVEDINKATEKYKGFEVAVKLIVDENTK 62
Query: 68 QAAISVV-PSAASLIIKAL--KEPPRD 91
+ I V P+ L++KA+ EP D
Sbjct: 63 EYEIEVKPPTTTELLLKAVGASEPSGD 89
>sp|Q46EU7|RL11_METBF 50S ribosomal protein L11P OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=rpl11p PE=3 SV=1
Length = 161
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 19 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQ-AAISV-VPS 76
GG+ L P +GPLG++ K+V + I + T D+ G+++ V + + +++ I V P
Sbjct: 11 GGKANPGPPLGPALGPLGVNIKEVVEKINEKTRDYNGMQVPVKVIVDDKKNVEIEVGTPP 70
Query: 77 AASLIIKAL 85
ASLI+K L
Sbjct: 71 TASLIMKEL 79
>sp|Q8PY53|RL11_METMA 50S ribosomal protein L11P OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rpl11p PE=3 SV=1
Length = 161
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 19 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQ-AAISV-VPS 76
GG+ L P +GPLG++ K+V + I + T D+ G+++ V + + +++ I V P
Sbjct: 11 GGKANPGPPLGPALGPLGVNIKEVVEKINEKTRDYNGMQVPVKVIVDDKKNVEIEVGTPP 70
Query: 77 AASLIIKAL 85
ASL++K L
Sbjct: 71 TASLVMKEL 79
>sp|Q8TI82|RL11_METAC 50S ribosomal protein L11P OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpl11p PE=3
SV=1
Length = 161
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 19 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQ-AAISV-VPS 76
GG+ L P +GPLG++ K+V + I + T D+ G+++ V + + +++ I V P
Sbjct: 11 GGKANPGPPLGPALGPLGVNIKEVVEKINEKTRDYNGMQVPVKVIVDDKKNVEIEVGTPP 70
Query: 77 AASLIIKAL 85
ASL++K L
Sbjct: 71 TASLVMKEL 79
>sp|A6UQ78|RL11_METVS 50S ribosomal protein L11P OS=Methanococcus vannielii (strain SB
/ ATCC 35089 / DSM 1224) GN=rpl11p PE=3 SV=1
Length = 159
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 13 VYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAAIS 72
V + GG+ A L P IGPLG++ +V I T D++G+ + V + ++ +
Sbjct: 6 VEILVTGGKATAGPPLGPAIGPLGVNIMQVVQMINTKTKDYEGMSVPVKVIVETTKRTFE 65
Query: 73 V---VPSAASLIIKAL 85
V +P A++LI K L
Sbjct: 66 VEVGIPPASALIKKEL 81
>sp|Q2NEW0|RL11_METST 50S ribosomal protein L11P OS=Methanosphaera stadtmanae (strain
DSM 3091) GN=rpl11p PE=3 SV=1
Length = 160
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 28 LAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLT--IQNRQAAISV-VPSAASLIIKA 84
L P IGPLG++ +V ++I K T D+ G+K+ V +T + + IS+ P +L++
Sbjct: 21 LGPAIGPLGINMMQVVEEINKKTADFGGMKVPVKITADMDTKDFEISIGTPPTTALVLDE 80
Query: 85 L 85
L
Sbjct: 81 L 81
>sp|A7IAK5|RL11_METB6 50S ribosomal protein L11P OS=Methanoregula boonei (strain 6A8)
GN=rpl11p PE=3 SV=1
Length = 158
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 19 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQN-RQAAISV-VPS 76
GG+ A L P +GPLG++ K V D+I T + G+++ V + + + +Q ++V +P
Sbjct: 11 GGKATAGPPLGPALGPLGINVKAVVDEINAKTASFNGMQVPVKVEVNDKKQFTVTVGIPP 70
Query: 77 AASLIIK 83
+LI K
Sbjct: 71 TTALIKK 77
>sp|A6VH19|RL11_METM7 50S ribosomal protein L11P OS=Methanococcus maripaludis (strain
C7 / ATCC BAA-1331) GN=rpl11p PE=3 SV=1
Length = 159
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 13 VYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAAIS 72
V + GG+ A L P IGPLG++ +V I + T D+ G+ + V + + +
Sbjct: 6 VEILVSGGKATAGPPLGPAIGPLGVNIMQVVQKINEMTKDYDGMSVPVKVIVNTDKRTFE 65
Query: 73 V---VPSAASLIIKAL 85
V +P A++L+ K L
Sbjct: 66 VEVGIPPASALVKKEL 81
>sp|A9A9N0|RL11_METM6 50S ribosomal protein L11P OS=Methanococcus maripaludis (strain
C6 / ATCC BAA-1332) GN=rpl11p PE=3 SV=1
Length = 159
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 13 VYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAAIS 72
V + GG+ A L P IGPLG++ +V I + T D+ G+ + V + + +
Sbjct: 6 VEILVSGGKATAGPPLGPAIGPLGVNIMQVVQKINEMTKDYDGMSVPVKVIVNTDKRTFE 65
Query: 73 V---VPSAASLIIKAL 85
V +P A++L+ K L
Sbjct: 66 VEVGIPPASALVKKEL 81
>sp|P62445|RL11_METMP 50S ribosomal protein L11P OS=Methanococcus maripaludis (strain
S2 / LL) GN=rpl11p PE=3 SV=1
Length = 159
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 13 VYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAAIS 72
V + GG+ A L P IGPLG++ +V I T D++G+ + V + + +
Sbjct: 6 VEILVSGGKATAGPPLGPAIGPLGVNIMQVVQKINNMTKDYEGMSVPVKVIVDTDKRTFE 65
Query: 73 V---VPSAASLIIKAL 85
V +P A++LI K +
Sbjct: 66 VEVGIPPASALIKKEI 81
>sp|A4YH87|RL11_METS5 50S ribosomal protein L11P OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=rpl11p PE=3 SV=1
Length = 168
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 11 KKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTI--QNRQ 68
K + + GG V LAP + LGL+ +V I +AT +KG+ + V L + ++
Sbjct: 4 KSIKVVVEGGNVKPGPPLAPTLSQLGLNVGEVVKKINEATSQFKGMTVPVTLDVDTDTKK 63
Query: 69 AAISV-VPSAASLIIK 83
+SV VP+ SL++K
Sbjct: 64 YEVSVGVPTTTSLLVK 79
>sp|P35025|RL11_SULAC 50S ribosomal protein L11P OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rpl11p PE=1 SV=3
Length = 170
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 11 KKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAA 70
K + + GG L P + LGL+ ++V I T +KG+ + V + I +
Sbjct: 4 KTIKIMVEGGSAKPGPPLGPTLSQLGLNVQEVVKKINDVTAQFKGMSVPVTIEIDSSTKK 63
Query: 71 ISV---VPSAASLIIKAL--KEPPRD--RKKVKN 97
+ VP+ SL++KA+ +EP D KK+ N
Sbjct: 64 YDIKVGVPTTTSLLLKAINAQEPSGDPAHKKIGN 97
>sp|Q12UQ0|RL11_METBU 50S ribosomal protein L11P OS=Methanococcoides burtonii (strain
DSM 6242) GN=rpl11p PE=3 SV=1
Length = 161
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 19 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQ-NRQAAISV-VPS 76
GG+ L P +GPLG++ K V + I + T D+ G+++ V + + ++ I V P
Sbjct: 11 GGKANPGPPLGPALGPLGVNIKDVIEKINEKTKDYNGMQVPVKVIVNDDKSVEIEVGTPP 70
Query: 77 AASLIIKAL 85
++LI+K L
Sbjct: 71 TSALILKEL 79
>sp|Q97BN1|RL11_THEVO 50S ribosomal protein L11P OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=rpl11p PE=3 SV=1
Length = 158
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 19 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTI---QNRQAAISV-V 74
GG+ + P +GPLGL+ +V +I + T +++G+++ V +T+ + ++ I+V V
Sbjct: 11 GGKATTGPPIGPALGPLGLNVAQVVKEINEKTKEFQGMQVPVTVTVIDPETKKYEITVGV 70
Query: 75 PSAASLIIKAL 85
P ++L+ K L
Sbjct: 71 PPTSALLKKEL 81
>sp|A4FW91|RL11_METM5 50S ribosomal protein L11P OS=Methanococcus maripaludis (strain
C5 / ATCC BAA-1333) GN=rpl11p PE=3 SV=1
Length = 159
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 13 VYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAAIS 72
V + GG+ A L P IGPLG++ +V I T D+ G+ + V + + +
Sbjct: 6 VEILVSGGKATAGPPLGPAIGPLGVNIMQVVQKINDMTKDYDGMSVPVKVIVDTDKRTFE 65
Query: 73 V---VPSAASLIIKAL 85
V +P A++L+ K L
Sbjct: 66 VEVGIPPASALVKKEL 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,784,365
Number of Sequences: 539616
Number of extensions: 1573097
Number of successful extensions: 4135
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 4065
Number of HSP's gapped (non-prelim): 100
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)