RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13546
         (109 letters)



>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 92

 Score =  107 bits (270), Expect = 8e-33
 Identities = 69/84 (82%), Positives = 74/84 (88%)

Query: 1  MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
           PPKFDP EVK VYLRC GGEVGATS+LAPKIGPLGLSPKKVGDDIAKATGDWKGL+ITV
Sbjct: 7  GPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 66

Query: 61 CLTIQNRQAAISVVPSAASLIIKA 84
           LTIQNRQA I VVPSA++L   +
Sbjct: 67 KLTIQNRQAQIEVVPSASALSGPS 90


>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal
          domain {Thermotoga maritima [TaxId: 2336]}
          Length = 63

 Score = 30.0 bits (68), Expect = 0.010
 Identities = 10/53 (18%), Positives = 23/53 (43%)

Query: 12 KVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTI 64
          ++ L+   G+      + P +G  G++  +        T D  G+ + V +T+
Sbjct: 1  QIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITV 53


>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal
          domain {Archaeon Haloarcula marismortui [TaxId: 2238]}
          Length = 70

 Score = 24.9 bits (55), Expect = 1.1
 Identities = 5/24 (20%), Positives = 8/24 (33%)

Query: 74 VPSAASLIIKALKEPPRDRKKVKN 97
          VP  A LI           +  ++
Sbjct: 2  VPPTAELIKDEAGFETGSGEPQED 25


>d2jdih2 b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP synthase
          N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 85

 Score = 23.2 bits (50), Expect = 5.8
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 5  FDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKV 42
          F+   V++V +    G  G  ++  P +  L      V
Sbjct: 12 FNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVV 49


>d4ubpa_ d.8.1.1 (A:) Urease, gamma-subunit {Bacillus pasteurii
           [TaxId: 1474]}
          Length = 100

 Score = 22.6 bits (49), Expect = 9.4
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 75  PSAASLIIKALKEPPRDRKKVKN--DWSWHMLPHNDC 109
           P A ++I   + E  RD K V    +   H+L  +D 
Sbjct: 33  PEAVAIITSFIMEGARDGKTVAMLMEEGKHVLTRDDV 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 422,262
Number of extensions: 16529
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 7
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (21.8 bits)