BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13547
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZKR|II Chain i, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 165
Score = 233 bits (593), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 114/163 (69%), Positives = 129/163 (79%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
MPPKFDP E+K VYLRC GGEVGATS+LAPKIGPLGLSPKKVGDDIAKATGDWKGL+ITV
Sbjct: 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60
Query: 61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRXXXXXXXXXXXXPIDEIYNISRTMRPRS 120
LTIQNRQA I VVPSA++LIIKALKEPPRDR DEI NI+R MR RS
Sbjct: 61 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS 120
Query: 121 MARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDNGEIEVP 163
+AR+ GT+KE+LGT QSVG V+GR DII+ I++G +E P
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163
>pdb|3IZS|J Chain J, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O5H|L Chain L, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3J16|H Chain H, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 165
Score = 207 bits (528), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/164 (62%), Positives = 123/164 (75%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
MPPKFDP EVK +YLR VGGEVGA+++LAPKIGPLGLSPKKVG+DIAKAT ++KG+K+TV
Sbjct: 1 MPPKFDPNEVKYLYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKATKEFKGIKVTV 60
Query: 61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRXXXXXXXXXXXXPIDEIYNISRTMRPRS 120
L IQNRQAA SVVPSA+SL+I ALKEPPRDR +DEI I+R MR +S
Sbjct: 61 QLKIQNRQAAASVVPSASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKS 120
Query: 121 MARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDNGEIEVPE 164
R KE+LGT QSVG V+ ++ DIIE I+ GEIE+PE
Sbjct: 121 FGRTLASVTKEILGTAQSVGCRVDFKNPHDIIEGINAGEIEIPE 164
>pdb|3IZR|J Chain J, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 166
Score = 206 bits (524), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 100/164 (60%), Positives = 126/164 (76%), Gaps = 1/164 (0%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATG-DWKGLKIT 59
MPPK DPT+V V++R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 60 VCLTIQNRQAAISVVPSAASLIIKALKEPPRDRXXXXXXXXXXXXPIDEIYNISRTMRPR 119
V LT+QNRQA +SVVPSAA+L+IKALKEP RDR +D++ I+R MR R
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR 120
Query: 120 SMARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDNGEIEVP 163
SMA++ GTVKE+LGTC SVG TV+G+ +D+ + I +GE+E+P
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEIP 164
>pdb|3JYW|K Chain K, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
pdb|3J2K|8 Chain 8, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 138
Score = 171 bits (434), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/138 (62%), Positives = 102/138 (73%)
Query: 7 PTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQN 66
P EVK +YLR VGGEVGA+++LAPKIGPLGLSPKKVG+DIAKAT ++KG+K+TV L IQN
Sbjct: 1 PNEVKYLYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKATKEFKGIKVTVQLKIQN 60
Query: 67 RQAAISVVPSAASLIIKALKEPPRDRXXXXXXXXXXXXPIDEIYNISRTMRPRSMARKFV 126
RQAA SVVPSA+SL+I ALKEPPRDR +DEI I+R MR +S R
Sbjct: 61 RQAAASVVPSASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKSFGRTLA 120
Query: 127 GTVKEVLGTCQSVGATVE 144
KE+LGT QSVG V+
Sbjct: 121 SVTKEILGTAQSVGCRVD 138
>pdb|1S1I|K Chain K, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 131
Score = 164 bits (414), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 97/131 (74%)
Query: 13 VYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAAIS 72
+YLR VGGEVGA+++LAPKIGPLGLSPKKVG+DIAKAT ++KG+K+TV L IQNRQAA S
Sbjct: 1 LYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKATKEFKGIKVTVQLKIQNRQAAAS 60
Query: 73 VVPSAASLIIKALKEPPRDRXXXXXXXXXXXXPIDEIYNISRTMRPRSMARKFVGTVKEV 132
VVPSA+SL+I ALKEPPRDR +DEI I+R MR +S R KE+
Sbjct: 61 VVPSASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKSFGRTLASVTKEI 120
Query: 133 LGTCQSVGATV 143
LGT QSVG V
Sbjct: 121 LGTAQSVGCRV 131
>pdb|3ZF7|M Chain M, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 164
Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 105/164 (64%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
MPPKFDP + V +R VGGEV AT+SLAPK+GPLGL+ KK+G+DIAK+T DWKGLK+T
Sbjct: 1 MPPKFDPNQEITVVVRAVGGEVPATASLAPKVGPLGLNAKKIGEDIAKSTKDWKGLKVTC 60
Query: 61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRXXXXXXXXXXXXPIDEIYNISRTMRPRS 120
L ++NR A + V PS AS +I+ALKEPPRDR EI I++ P S
Sbjct: 61 QLRVKNRVATVVVTPSVASRLIRALKEPPRDRKKVKNIKHDGNIAFSEILKIAKESAPNS 120
Query: 121 MARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDNGEIEVPE 164
M V EVLGT S+G T++G R I E + G+++VP
Sbjct: 121 MGASMKSVVMEVLGTAVSIGCTIDGEHPRAIQEKVQEGKLKVPN 164
>pdb|1WIB|A Chain A, Solution Structure Of The N-Terminal Domain From Mouse
Hypothetical Protein Bab22488
Length = 92
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 73/79 (92%)
Query: 2 PPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVC 61
PPKFDP EVK VYLRC GGEVGATS+LAPKIGPLGLSPKKVGDDIAKATGDWKGL+ITV
Sbjct: 8 PPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVK 67
Query: 62 LTIQNRQAAISVVPSAASL 80
LTIQNRQA I VVPSA++L
Sbjct: 68 LTIQNRQAQIEVVPSASAL 86
>pdb|3J21|H Chain H, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 164
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 19/161 (11%)
Query: 7 PTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQ- 65
P +V +V + GG+ L P IGPLGL+ K+V D I +AT D+ G+++ V + +
Sbjct: 2 PKQVVEVLVE--GGKATPGPPLGPAIGPLGLNVKQVVDKINEATKDFAGMQVPVKIIVDP 59
Query: 66 -NRQAAISV-VPSAASLIIKALK------EPPRDRXXXXXXXXXXXXPIDEIYNISRTMR 117
+Q I V VP + LI K L EP + ++++ I++ +
Sbjct: 60 VTKQFEIEVGVPPTSQLIKKELGLEKGSGEPKHN--------IVGNLTMEQVIKIAKMKK 111
Query: 118 PRSMARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDNG 158
+ +A KEV+GT S+G TVEG+ R++ + ID G
Sbjct: 112 DQMLALTLKAAAKEVIGTALSMGVTVEGKDPREVQKEIDEG 152
>pdb|2OTJ|I Chain I, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
Length = 161
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 16/151 (10%)
Query: 19 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQA-AISV-VPS 76
GGE L P++GP + + V +I T + G ++ V + + + I V VP
Sbjct: 10 GGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFDGTEVPVTVKYDDDGSFEIEVGVPP 69
Query: 77 AASLIIK------ALKEPPRDRXXXXXXXXXXXXPIDEIYNISRTMRPRSMARKFVGTVK 130
A LI EP D +D++ I+ P ++ K
Sbjct: 70 TAELIKDEAGFETGSGEPQEDFVADLS--------VDQVKQIAEQKHPDLLSYDLTNAAK 121
Query: 131 EVLGTCQSVGATVEGRSARDIIEAIDNGEIE 161
EV+GTC S+G T+EG + R+ E ID GE +
Sbjct: 122 EVVGTCTSLGVTIEGENPREFKERIDAGEYD 152
>pdb|1S72|I Chain I, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1YHQ|I Chain I, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|I Chain I, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|I Chain I, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|I Chain I, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|I Chain I, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|I Chain I, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|I Chain I, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|I Chain I, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|I Chain I, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|I Chain I, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|I Chain I, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|I Chain I, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|I Chain I, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|I Chain I, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|I Chain I, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|I Chain I, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|I Chain I, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|I Chain I, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|I Chain I, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTL|I Chain I, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|I Chain I, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CC2|I Chain I, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|I Chain I, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|I Chain I, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CMA|I Chain I, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|I Chain I, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|I Chain I, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3I55|I Chain I, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|I Chain I, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
Length = 162
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 16/151 (10%)
Query: 19 GGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQA-AISV-VPS 76
GGE L P++GP + + V +I T + G ++ V + + + I V VP
Sbjct: 11 GGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFDGTEVPVTVKYDDDGSFEIEVGVPP 70
Query: 77 AASLIIK------ALKEPPRDRXXXXXXXXXXXXPIDEIYNISRTMRPRSMARKFVGTVK 130
A LI EP D +D++ I+ P ++ K
Sbjct: 71 TAELIKDEAGFETGSGEPQEDFVADLS--------VDQVKQIAEQKHPDLLSYDLTNAAK 122
Query: 131 EVLGTCQSVGATVEGRSARDIIEAIDNGEIE 161
EV+GTC S+G T+EG + R+ E ID GE +
Sbjct: 123 EVVGTCTSLGVTIEGENPREFKERIDAGEYD 153
>pdb|3G4S|I Chain I, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|I Chain I, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|I Chain I, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
Length = 70
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 106 IDEIYNISRTMRPRSMARKFVGTVKEVLGTCQSVGATVE 144
+D++ I+ P ++ KEV+GTC S+G T+E
Sbjct: 32 VDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIE 70
>pdb|1NKW|G Chain G, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
pdb|1NWX|G Chain G, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
pdb|1NWY|G Chain G, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
pdb|1SM1|G Chain G, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
pdb|1XBP|G Chain G, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
pdb|2ZJP|F Chain F, Thiopeptide Antibiotic Nosiheptide Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|2ZJQ|F Chain F, Interaction Of L7 With L11 Induced By Microccocin Binding
To The Deinococcus Radiodurans 50s Subunit
pdb|2ZJR|F Chain F, Refined Native Structure Of The Large Ribosomal Subunit
(50s) From Deinococcus Radiodurans
pdb|3CF5|F Chain F, Thiopeptide Antibiotic Thiostrepton Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|3DLL|F Chain F, The Oxazolidinone Antibiotics Perturb The Ribosomal
Peptidyl-Transferase Center And Effect Trna Positioning
pdb|3PIO|F Chain F, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
pdb|3PIP|F Chain F, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
Length = 144
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 107 DEIYNISRTMRPRSMARKFVGTVKEVLGTCQSVGATVEG 145
D++ I++T P A V GT +S+G TVEG
Sbjct: 102 DQVLEIAKTKMPDLNAGSVEAAANTVAGTARSMGVTVEG 140
>pdb|1PNU|G Chain G, Crystal Structure Of A Streptomycin Dependent Ribosome
From Escherichia Coli, 50s Subunit Of 70s Ribosome. This
File, 1pnu, Contains Only Molecules Of The 50s Ribosomal
Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site
Trna Are In The Pdb File 1pns.
pdb|1PNY|G Chain G, Crystal Structure Of The Wild Type Ribosome From E. Coli,
50s Subunit Of 70s Ribosome. This File, 1pny, Contains
Only Molecules Of The 50s Ribosomal Subunit. The 30s
Subunit Is In The Pdb File 1pnx.
pdb|1VOR|J Chain J, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOU|J Chain J, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOW|J Chain J, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOY|J Chain J, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VP0|J Chain J, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400
Length = 143
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 107 DEIYNISRTMRPRSMARKFVGTVKEVLGTCQSVGATVEG 145
D++ I++T P A V GT +S+G TVEG
Sbjct: 102 DQVLEIAKTKMPDLNAGSVEAAANTVAGTARSMGVTVEG 140
>pdb|1M5I|A Chain A, Crystal Structure Of The Coiled Coil Region 129-250 Of The
Tumor Suppressor Gene Product Apc
Length = 125
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 105 PIDEIYNISRTMRPRSM---ARKFVGTVKEVLGTCQSVGATVEGRSAR 149
P+ E +++ M R + AR+ ++E LGTCQ + + R AR
Sbjct: 48 PLTENFSLQTDMTRRQLEYEARQIRVAMEEQLGTCQDMEKRAQRRIAR 95
>pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ3|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 442
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 109 IYNISRT---MRPRSMARKFVGTVKEVLGTCQSVGATVEGRSARDI 151
++++ +T +R +A F+GT K +G C S T G D+
Sbjct: 124 LFDLHQTVDGLREAELANSFIGTTKRGIGPCYSSKVTRNGLRVCDL 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,386,914
Number of Sequences: 62578
Number of extensions: 149986
Number of successful extensions: 247
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 24
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)