RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13547
(165 letters)
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 92
Score = 107 bits (269), Expect = 7e-32
Identities = 69/84 (82%), Positives = 74/84 (88%)
Query: 1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
PPKFDP EVK VYLRC GGEVGATS+LAPKIGPLGLSPKKVGDDIAKATGDWKGL+ITV
Sbjct: 7 GPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 66
Query: 61 CLTIQNRQAAISVVPSAASLIIKA 84
LTIQNRQA I VVPSA++L +
Sbjct: 67 KLTIQNRQAQIEVVPSASALSGPS 90
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain
{Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 70
Score = 61.1 bits (149), Expect = 5e-14
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 74 VPSAASLIIKALKEPPRDRKKVKNVKHNGNVPIDEIYNISRTMRPRSMARKFVGTVKEVL 133
VP A LI + ++ ++ +D++ I+ P ++ KEV+
Sbjct: 2 VPPTAELIKDEAGFETGSGEPQED--FVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVV 59
Query: 134 GTCQSVGATVE 144
GTC S+G T+E
Sbjct: 60 GTCTSLGVTIE 70
>gi|226355464|ref|YP_002785204.1|(72-143:144) putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115]
gi|226317454|gb|ACO45450.1| putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115] E=8e-31
s/c=1.88 id=89% cov=101%
Length = 72
Score = 60.4 bits (147), Expect = 1e-13
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 75 PSAASLIIKALKEPPRDRKKVKNVKHNGNVPIDEIYNISRTMRPRSMARKFVGTVKEVLG 134
P + LI KA N G + +++ I++T P A V G
Sbjct: 1 PPMSYLIRKAAGLS--KGSATPNKAKVGKLNWEQVLEIAKTKMPDLNAGSLEAAANTVAG 58
Query: 135 TCQSVGATVEGR 146
T +S+G T+EG
Sbjct: 59 TARSMGVTIEGA 70
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 74
Score = 35.7 bits (83), Expect = 2e-04
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 75 PSAASLIIKALKEPPRDRKKVKNVKHNGNVPIDEIYNISRTMRPRSMARKFVGTVKEVLG 134
P AA L+ KA + +N + D++ I+ P A ++ + G
Sbjct: 7 PPAAVLLKKAAGIESGSGEPNRNK--VATIKRDKVREIAELKMPDLNAASIEAAMRMIEG 64
Query: 135 TCQSVGATVE 144
T +S+G VE
Sbjct: 65 TARSMGIVVE 74
>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 68
Score = 35.3 bits (82), Expect = 3e-04
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 75 PSAASLIIKA--LKEPPRDRKKVKNVKHNGNVPIDEIYNISRTMRPRSMARKFVGTVKEV 132
P AA L+ KA +K K K G + ++ I++T + +
Sbjct: 1 PPAAVLLKKAAGIKSGSGKPNKDKV----GKISRAQLQEIAQTKAADMTGADIEAMTRSI 56
Query: 133 LGTCQSVGATVE 144
GT +S+G VE
Sbjct: 57 EGTARSMGLVVE 68
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 70
Score = 32.7 bits (75), Expect = 0.003
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 75 PSAASLIIKA--LKEPPRDRKKVKNVKHNGNVPIDEIYNISRTMRPRSMARKFVGTVKEV 132
P A+ L+ KA +++ + K+ G V +I I++T P A +K +
Sbjct: 3 PPASFLLKKAAGIEKGSSEPKRKIV----GKVTRKQIEEIAKTKMPDLNANSLEAAMKII 58
Query: 133 LGTCQSVGATV 143
GT +S+G V
Sbjct: 59 EGTAKSMGIEV 69
>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 67
Score = 31.5 bits (72), Expect = 0.006
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 75 PSAASLIIKA--LKEPPRDRKKVKNVKHNGNVPIDEIYNISRTMRPRSMARKFVGTVKEV 132
P A+ LI KA L++ + K G + +++ I++ P + +
Sbjct: 2 PPASYLIRKAAGLEKGAHKPGREKV----GRITWEQVLEIAKQKMPDLNTTDLEAAARMI 57
Query: 133 LGTCQSVG 140
G+ +S+G
Sbjct: 58 AGSARSMG 65
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 63
Score = 29.2 bits (66), Expect = 0.039
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 12 KVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTI 64
++ L+ G+ + P +G G++ + T D G+ + V +T+
Sbjct: 1 QIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITV 53
>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 350
Score = 26.9 bits (59), Expect = 1.3
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 75 PSAASLIIKALKEPPRDRKKVKNVKHNGNVPIDEIYNISRTMRPRSMARKF 125
P+ + ++K L ++ + V ++EI + RT P + A F
Sbjct: 141 PNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAF 191
>d1y0ba1 c.61.1.1 (A:1-191) Xanthine phosphoribosyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 191
Score = 24.6 bits (53), Expect = 6.8
Identities = 21/164 (12%), Positives = 49/164 (29%), Gaps = 46/164 (28%)
Query: 40 KKVGDDIAKATGDWKGLKITVCLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKNVK 99
+++GD+ A + IT +TI S + A +K RK
Sbjct: 36 QRIGDEFASR---FAKDGITKIVTI-----ESSGIAPAVMTGLKLGVPVVFARKHKSLTL 87
Query: 100 HNGNVPIDEIYNISRTMRPRSMARKFV----------------GTVKEVLGTCQSVGATV 143
+ + +T +++ + ++ + GA++
Sbjct: 88 TDNLLTASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASI 147
Query: 144 EG---------RSARDI-------------IEAIDNGEIEVPEE 165
G + RD I++++ G++ +E
Sbjct: 148 AGIGIVIEKSFQPGRDELVKLGYRVESLARIQSLEEGKVSFVQE 191
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.134 0.383
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 620,127
Number of extensions: 27474
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 13
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (22.6 bits)