BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1355
(76 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
+ +KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 2 SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 44
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
Length = 168
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/40 (87%), Positives = 38/40 (95%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 2 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA 41
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/40 (87%), Positives = 38/40 (95%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 4 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA 43
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/40 (87%), Positives = 38/40 (95%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA 42
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/40 (87%), Positives = 38/40 (95%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 4 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA 43
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/39 (89%), Positives = 37/39 (94%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
ICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 1 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 39
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/39 (89%), Positives = 37/39 (94%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
ICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 41
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex
With Gppnhp
Length = 170
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/40 (85%), Positives = 37/40 (92%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3 KICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAA 42
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex
With Gppnhp
Length = 170
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/40 (85%), Positives = 37/40 (92%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3 KICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAA 42
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gtp
Length = 170
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/40 (85%), Positives = 37/40 (92%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3 KICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAA 42
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex
With Gppnhp
Length = 170
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/40 (85%), Positives = 37/40 (92%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3 KICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAA 42
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex
With Gppnhp
Length = 170
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 34/40 (85%), Positives = 37/40 (92%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3 KICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAA 42
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/36 (94%), Positives = 36/36 (100%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
ICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTI
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTI 38
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 29/40 (72%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
K KLVLLG+ GKSSLVLRFV+ QF E+QESTIG
Sbjct: 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA 48
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 28/39 (71%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
+ KLVLLGE+AVGKSS+VLRFV F E +E TIG
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAA 39
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
YK VLLGES+VGKSS+VLR + FHE +TIG
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGA 42
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6
Complexed With Gdp
Length = 162
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+YKLV LGE AVGK+S++ RF F +STIG
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIG 35
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+S VGKS+L+ RF R +F+ +STIG
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 39
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+S VGKS+L+ RF R +F+ +STIG
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIG 41
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+S VGKS+L+ RF + +F+ +STIG
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG 47
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+S VGKS+L+ RF R +F+ +STIG
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 63
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+S VGKS+L+ RF R +F+ +STIG
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 63
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+S VGKS+L+ RF R +F+ +STIG
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 45
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+S VGKS+L+ RF R +F+ +STIG
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 54
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
Length = 172
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+S VGKS+L+ RF R +F+ +STIG
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 42
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
Length = 167
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+S VGKS+L+ RF R +F+ +STIG
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 39
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 6 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 40
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
Length = 179
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 48
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 35
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 6 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 40
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 47
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 16 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 50
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 2 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 36
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
+K+VLLGE VGK+SLVLR+ +F++ +T+G
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGA 41
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KLVL+G+++VGK+ +V RF G F E Q STIG
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIG 63
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+GES VGK++L+ RF R +F +TIG
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG 59
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+GES VGK++L+ RF R +F +TIG
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG 44
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
YK+VL G++AVGKSS ++R + +F E +T+G
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLG 62
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+S VGKS+L+ RF +F+ +STIG
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIG 44
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 50
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With
Rab33 Gtpase Bound To Gdp And Alf3
Length = 198
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K++++G+S VGK+ L RF G+F + E+TIG
Sbjct: 30 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG 63
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 40
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 59
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 42
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
Length = 175
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 43
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 40
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 67
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
Length = 181
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 43
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+YKLV+LG VGKS+L ++FV+G F E + TI
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI 36
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K++++G+S VGK+ L RF G+F + E+TIG
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG 54
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG--------CGN 67
+ I + K+ LLG++ VGKSS+V RFV+ F TIG CGN
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN 69
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+YKLV+LG VGKS+L ++FV+G F E + TI
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI 36
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+YKLV+LG VGKS+L ++FV+G F E + TI
Sbjct: 5 EYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTI 38
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ K++++GES VGKSSL+LRF F +TIG
Sbjct: 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG 49
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+K+VLLGE VGK+SLVLR+ +F++ +T+
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL 39
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+K+VLLGE VGK+SLVLR+ +F++ +T+
Sbjct: 21 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL 53
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 33
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHE 56
Y++ + G VGKSSLVLRFV+G F E
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRE 30
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+++G+S VGKSSL+LRF F +TIG
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG 43
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G+S VGK+ L+LRF + E STIG
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIG 50
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G+S VGKS L+LRF + + STIG
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIG 43
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+YKLV+LG VGKS+L ++FV+G F + + TI
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTI 36
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG 75
K++L+G+S VGKS L++RFV +F+ +TIG + D G
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 49
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG 75
K++L+G+S VGKS L++RFV +F+ +TIG + D G
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 49
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG 75
K++L+G+S VGKS L++RFV +F+ +TIG + D G
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 49
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG 75
K++L+G+S VGKS L++RFV +F+ +TIG + D G
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 53
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
+ K+ LLG++ VGKSS+V RFV F TIG
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGA 40
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K++L+G+S VGKS L++RFV +F+ +TIG
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG 54
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
K+++LG+S VGK+SL+ R+V ++ + ++TIG
Sbjct: 10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA 43
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
L+L+G+S VGKS L+LRF + E STIG
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIG 32
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp
Analogue
Length = 201
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G + VGK+ LV RF +G F Q +TIG
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG 60
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
K+ +LG +VGKSSL ++FV GQF + + TI
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI 39
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
K+ +LG +VGKSSL ++FV GQF + + TI
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTI 37
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To
Gdp
Length = 169
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
K+ +LG +VGKSSL ++FV GQF + + TI
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI 34
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
K+ +LG +VGKSSL ++FV GQF + + TI
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI 39
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound
State
Length = 196
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 22 QTQAKICQYKLVLLGESAVGKSSLVLRFVRGQF 54
Q+ AK + KL + G + VGKS+LV+RF+ +F
Sbjct: 21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRF 53
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G S VGKS L+LRF + STIG
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG 42
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex
With Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G S VGKS L+LRF + STIG
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG 42
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
+ K+ LLG++ VGKSS++ RFV F TIG
Sbjct: 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGA 41
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K +K++LLG+ VGKSSL+ R+V +F TIG
Sbjct: 8 KSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIG 45
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G+S VGK+ ++ RF F+ STIG
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG 42
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
T K K+++LG+S VGK+SL+ ++V +F ++TIG
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA 43
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
T K K+++LG+S VGK+SL+ ++V +F ++TIG
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA 43
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
T K K+++LG+S VGK+SL+ ++V +F ++TIG
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA 43
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
T K K+++LG+S VGK+SL+ ++V +F ++TIG
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA 43
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G+S VGK+ ++ RF F+ STIG
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG 40
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G S VGKS L+LRF + STIG
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG 55
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
Length = 177
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K +K++LLG+ VGKSSL+ R+V +F TIG
Sbjct: 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG 41
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
Length = 177
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K +K++LLG+ VGKSSL+ R+V +F TIG
Sbjct: 6 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG 43
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q+KLVL+G+ GK++ V R + G+F + +T+G
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 49
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q+KLVL+G+ GK++ V R + G+F + +T+G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 44
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q+KLVL+G+ GK++ V R + G+F + +T+G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 44
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q+KLVL+G+ GK++ V R + G+F + +T+G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 44
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q+KLVL+G+ GK++ V R + G+F + +T+G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 44
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q+KLVL+G+ GK++ V R + G+F + +T+G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 44
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
Length = 216
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q+KLVL+G+ GK++ V R + G+F + +T+G
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 44
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q+KLVL+G+ GK++ V R + G+F + +T+G
Sbjct: 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 37
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q+KLVL+G+ GK++ V R + G+F + +T+G
Sbjct: 11 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 46
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With
Its Cargo (Kap60p) And Rangtp
Length = 176
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q+KLVL+G+ GK++ V R + G+F + +T+G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 44
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
Length = 176
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q+KLVL+G+ GK++ V R + G+F + +T+G
Sbjct: 5 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 40
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K+V++G AVGKSS++ R+ +G F + + TIG
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG 39
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q+KLVL+G+ GK++ V R + G+F + T+G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLG 44
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
++ +KLVL+G+ GK++ V R + G+F + +TIG
Sbjct: 9 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIG 46
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G S+VGK+S + R+ F ST+G
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG 56
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+ +YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 2 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI 37
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K++LLG+ VGKSSL+ R+V +F TIG
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIG 41
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q+KLVL+G+ GK++ V R + G+F + T+G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLG 44
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 32.7 bits (73), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+ +YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 1 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI 36
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 32.7 bits (73), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN-VPGRDRQG 75
YK+ L+G+ VGK++ + R + G+F + +T+G + V D QG
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQG 58
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
++ +KLVL+G+ GK++ V R + G+F + +TIG
Sbjct: 2 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIG 39
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI 37
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
++ +KLVL+G+ GK++ V R + G+F + +TIG
Sbjct: 1 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIG 38
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 32.0 bits (71), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K +++G++ VGKS L+L+F +F + TIG
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG 55
>pdb|1CLU|A Chain A, H-Ras Complexed With
Diaminobenzophenone-Beta,Gamma-Imido- Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+ +YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI 36
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+ +YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI 36
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K +++G++ VGKS L+L+F +F + TIG
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG 44
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 61
Q+ + +K++++G VGKS+L L+F+ +F E E T
Sbjct: 2 QSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 39
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+ +YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 1 MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTI 36
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+++G S+VGK+S + R+ F ST+G
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG 57
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K++++G S+VGK+S + R+ F ST+G
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG 42
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 61
Q + +K++++G VGKS+L L+F+ +F E E T
Sbjct: 1 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 38
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals
A Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 61
Q + +K++++G VGKS+L L+F+ +F E E T
Sbjct: 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 50
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 61
Q + +K++++G VGKS+L L+F+ +F E E T
Sbjct: 1 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 38
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
K+V+LG VGK+SL +FV G+F E + T+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTV 57
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K++++G S+VGK+S + R+ F ST+G
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG 39
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 61
Q + +K++++G VGKS+L L+F+ +F E E T
Sbjct: 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 46
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp
(Complex C)
Length = 185
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 42
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 39
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 38
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 40
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV 39
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 40
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
Length = 168
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 61
+ +K++++G VGKS+L L+F+ +F E E T
Sbjct: 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 36
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 40
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ +++++G VGK+SL+ RF F E +ST+G
Sbjct: 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG 60
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 41
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q+KLVL+G+ GK++ V R + G+ + +T+G
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLG 49
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQF 54
+K++L+G+S VGK+ L++RF G F
Sbjct: 9 VAFKVMLVGDSGVGKTCLLVRFKDGAF 35
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 58
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 61
+ +K++++G VGKS+L L+F+ +F E E T
Sbjct: 1 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 35
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
KL+ LG+S VGK++ + R+ +F+ +T+G
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG 45
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
KL+ LG+S VGK++ + R+ +F+ +T+G
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG 59
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ F + QF E T+
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 58
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
KL+ LG+S VGK++ + R+ +F+ +T+G
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG 45
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
KL+ LG+S VGK++ + R+ +F+ +T+G
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG 45
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding
Protein Rhod
Length = 214
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
K+VL+G+ GK+SL++ F G F E T+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTV 67
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
KL+ LG+S VGK++ + R+ +F+ +T+G
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG 45
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K + LG+S VGK+S++ ++ G+F+ +T+G
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVG 45
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K +++G + GKS L+ +F+ +F + TIG
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIG 59
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ +GQF E T+
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV 43
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q K+V+LG+ A GK+SL F + F + + TIG
Sbjct: 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG 40
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K +++G + GKS L+ +F+ +F + TIG
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIG 45
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K +++G + GKS L+ +F+ +F + TIG
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIG 44
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQF 54
K+V++G+ AVGK+ L+L F +G+
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKGEI 48
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ F + +F E T+
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV 58
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K +++G + GKS L+ +F+ +F + TIG
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIG 42
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQ 53
K+V++G+ AVGK+ L+L F +G+
Sbjct: 24 KIVVVGDGAVGKTCLLLAFSKGE 46
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed
With Gdp
Length = 180
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ F + QF T+
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV 38
>pdb|1NBC|A Chain A, Bacterial Type 3a Cellulose-Binding Domain
pdb|1NBC|B Chain B, Bacterial Type 3a Cellulose-Binding Domain
Length = 155
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 18 RPNDQTQAKICQYKLVLLGESAVGKSSLVLRF---VRGQ 53
P+D T + Q+K+ G SA+ S L LR+ V GQ
Sbjct: 10 NPSDTTNSINPQFKVTNTGSSAIDLSKLTLRYYYTVDGQ 48
>pdb|4B9F|A Chain A, High Resolution Structure For Family 3a Carbohydrate
Binding Module From The Cipa Scaffolding Of Clostridium
Thermocellum
pdb|4B9F|B Chain B, High Resolution Structure For Family 3a Carbohydrate
Binding Module From The Cipa Scaffolding Of Clostridium
Thermocellum
Length = 152
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 18 RPNDQTQAKICQYKLVLLGESAVGKSSLVLRF---VRGQ 53
P+D T + Q+K+ G SA+ S L LR+ V GQ
Sbjct: 10 NPSDTTNSINPQFKVTNTGSSAIDLSKLTLRYYYTVDGQ 48
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 42 KSSLVLRFVRGQFHEYQESTI 62
KSSLVLRFV+G F + TI
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTI 41
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
I + +L +LG++ GKSSL+ RF+ G + +++
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKT 38
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain
Bound To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain
Bound To Gdp
Length = 180
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 30 YKLVLLGESAVGKSSLVLRF 49
+K++LLGES VGKS+L F
Sbjct: 13 FKVMLLGESGVGKSTLAGTF 32
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
I + +L +LG++ GKSSL+ RF+ G + +++
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKT 38
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ + QF E T+
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV 38
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ + QF E T+
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV 41
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQE 59
Y++VLLG+ VGK+SL F Q + E
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHE 34
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ + QF E T+
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV 36
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ + QF E T+
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV 36
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With
Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ + QF E T+
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV 38
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ + QF E T+
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV 38
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
KLV++G+ A GK+ L++ + QF E T+
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV 38
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 31 KLVLLGESAVGKSSLVLRF-VRGQFHEY 57
K VL+G+ AVGK+SLV+ + G EY
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEY 49
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K +++G+ VGKS L+ +F +F TIG
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG 64
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound
Gdp
Length = 195
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 30 YKLVLLGESAVGKSSLVLRF 49
+K++L+GES VGKS+L F
Sbjct: 24 FKVMLVGESGVGKSTLAGTF 43
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K +++G+ VGKS L+ +F +F TIG
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG 49
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 30 YKLVLLGESAVGKSSLVLRF 49
+K++L+GES VGKS+L F
Sbjct: 3 FKVMLVGESGVGKSTLAGTF 22
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From
Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From
Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From
Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From
Chlamydomonas
Length = 208
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 18 RPNDQTQAKICQYKLVLLGESAVGKSSLVLRF 49
+P D T C K+ ++GE+ VGKS+L+ F
Sbjct: 11 KPIDITATLRC--KVAVVGEATVGKSALISMF 40
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 27 ICQYKLVLLGESAVGKSSL 45
+ Y++VL+GE VGKS+L
Sbjct: 4 MTYYRVVLIGEQGVGKSTL 22
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 27 ICQYKLVLLGESAVGKSSL 45
+ Y++VL+GE VGKS+L
Sbjct: 4 MTYYRVVLIGEQGVGKSTL 22
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 30 YKLVLLGESAVGKSSLVLRF 49
Y++VL+GE VGKS+L F
Sbjct: 38 YRVVLIGEQGVGKSTLANIF 57
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 30 YKLVLLGESAVGKSSLVLRF 49
Y++VL+GE VGKS+L F
Sbjct: 7 YRVVLIGEQGVGKSTLANIF 26
>pdb|3U58|A Chain A, Crystal Structure Of The Tetrahymena Telomerase
Processivity Factor Teb1 Ab
pdb|3U58|B Chain B, Crystal Structure Of The Tetrahymena Telomerase
Processivity Factor Teb1 Ab
pdb|3U58|C Chain C, Crystal Structure Of The Tetrahymena Telomerase
Processivity Factor Teb1 Ab
pdb|3U58|D Chain D, Crystal Structure Of The Tetrahymena Telomerase
Processivity Factor Teb1 Ab
Length = 213
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66
K+ QY + GE K++L L+F G + + T+GG G
Sbjct: 76 KVGQYYYFIGGEVKQFKNNLELKFKFGDYQIIPKETLGGSG 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,741,990
Number of Sequences: 62578
Number of extensions: 46172
Number of successful extensions: 405
Number of sequences better than 100.0: 228
Number of HSP's better than 100.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 228
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)