Query psy1355
Match_columns 76
No_of_seqs 173 out of 1020
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 22:07:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.3 5.1E-13 1.7E-17 85.6 2.8 45 26-70 10-54 (216)
2 2hup_A RAS-related protein RAB 99.1 2.2E-11 7.4E-16 75.9 2.7 48 21-68 21-68 (201)
3 2oil_A CATX-8, RAS-related pro 99.1 9.5E-11 3.2E-15 71.9 4.2 45 24-68 20-64 (193)
4 2a5j_A RAS-related protein RAB 99.1 8.2E-11 2.8E-15 72.3 3.5 44 24-67 16-59 (191)
5 2gf9_A RAS-related protein RAB 99.1 1.2E-10 4.2E-15 71.3 4.2 45 24-68 17-61 (189)
6 3c5c_A RAS-like protein 12; GD 99.0 2.6E-10 8.9E-15 70.2 4.9 44 24-67 16-59 (187)
7 1oix_A RAS-related protein RAB 99.0 1.8E-10 6.2E-15 71.3 4.0 44 24-67 24-67 (191)
8 2il1_A RAB12; G-protein, GDP, 99.0 1.1E-10 3.9E-15 72.0 2.8 47 23-69 20-66 (192)
9 2ew1_A RAS-related protein RAB 99.0 2.4E-10 8.3E-15 71.6 3.9 45 24-68 21-65 (201)
10 1gwn_A RHO-related GTP-binding 99.0 4.3E-10 1.5E-14 70.5 4.8 44 24-67 23-66 (205)
11 3ihw_A Centg3; RAS, centaurin, 99.0 5.6E-10 1.9E-14 68.7 5.0 38 25-62 16-53 (184)
12 3dz8_A RAS-related protein RAB 99.0 4.3E-11 1.5E-15 73.6 -0.3 46 23-68 17-62 (191)
13 1zd9_A ADP-ribosylation factor 98.9 8.9E-10 3.1E-14 67.6 4.6 41 27-67 20-60 (188)
14 3reg_A RHO-like small GTPase; 98.9 1.3E-09 4.4E-14 66.9 5.1 45 24-68 18-62 (194)
15 2f7s_A C25KG, RAS-related prot 98.9 4.8E-10 1.6E-14 70.0 3.0 45 24-68 20-64 (217)
16 2f9l_A RAB11B, member RAS onco 98.9 6.7E-10 2.3E-14 68.8 3.4 39 27-65 3-41 (199)
17 3q3j_B RHO-related GTP-binding 98.9 1.4E-09 4.9E-14 68.3 5.0 44 24-67 22-65 (214)
18 3tkl_A RAS-related protein RAB 98.9 1E-09 3.5E-14 67.0 4.2 45 25-69 12-56 (196)
19 3clv_A RAB5 protein, putative; 98.9 1E-09 3.5E-14 66.7 4.1 46 26-71 4-49 (208)
20 4bas_A ADP-ribosylation factor 98.9 9.9E-10 3.4E-14 67.2 4.0 44 23-66 11-55 (199)
21 1z06_A RAS-related protein RAB 98.9 6.9E-10 2.4E-14 67.9 3.3 43 26-68 17-59 (189)
22 2bme_A RAB4A, RAS-related prot 98.9 1.2E-09 4.2E-14 66.2 4.3 45 25-69 6-50 (186)
23 3bc1_A RAS-related protein RAB 98.9 1.4E-09 4.7E-14 65.9 4.6 43 25-67 7-49 (195)
24 1z08_A RAS-related protein RAB 98.9 1.1E-09 3.9E-14 65.3 4.1 42 26-67 3-44 (170)
25 3l0i_B RAS-related protein RAB 98.9 1.5E-10 5.1E-15 71.6 0.2 43 25-67 29-71 (199)
26 3oes_A GTPase rhebl1; small GT 98.9 1.5E-09 5.2E-14 67.1 4.4 42 25-66 20-61 (201)
27 2fg5_A RAB-22B, RAS-related pr 98.9 1.4E-09 4.8E-14 66.9 4.2 46 24-69 18-63 (192)
28 1z0f_A RAB14, member RAS oncog 98.9 1.2E-09 4.2E-14 65.5 3.4 44 24-67 10-53 (179)
29 1z2a_A RAS-related protein RAB 98.9 1E-09 3.5E-14 65.2 3.0 41 27-67 3-43 (168)
30 1zbd_A Rabphilin-3A; G protein 98.9 2E-09 7E-14 66.3 4.4 45 25-69 4-48 (203)
31 3tw8_B RAS-related protein RAB 98.9 1.7E-09 5.7E-14 65.0 3.7 45 25-69 5-49 (181)
32 2fu5_C RAS-related protein RAB 98.9 4.4E-10 1.5E-14 68.1 1.1 43 26-68 5-47 (183)
33 4gzl_A RAS-related C3 botulinu 98.9 2.5E-09 8.4E-14 66.6 4.5 49 18-66 19-67 (204)
34 1r2q_A RAS-related protein RAB 98.9 2.1E-09 7.1E-14 63.9 3.9 42 27-68 4-45 (170)
35 1z0j_A RAB-22, RAS-related pro 98.9 2.3E-09 7.9E-14 63.8 4.1 43 26-68 3-45 (170)
36 1m7b_A RND3/RHOE small GTP-bin 98.8 3.3E-09 1.1E-13 64.7 4.8 42 26-67 4-45 (184)
37 2efe_B Small GTP-binding prote 98.8 1.6E-09 5.5E-14 65.3 3.3 44 24-67 7-50 (181)
38 1g16_A RAS-related protein SEC 98.8 1.4E-09 4.9E-14 64.7 3.0 41 28-68 2-42 (170)
39 1wms_A RAB-9, RAB9, RAS-relate 98.8 2.1E-09 7.1E-14 64.6 3.7 42 26-67 4-45 (177)
40 2bcg_Y Protein YP2, GTP-bindin 98.8 1.5E-09 5E-14 67.2 3.1 42 26-67 5-46 (206)
41 2o52_A RAS-related protein RAB 98.8 8.8E-10 3E-14 68.4 2.1 45 24-68 20-64 (200)
42 2q3h_A RAS homolog gene family 98.8 2.3E-09 7.8E-14 66.0 3.6 43 24-66 15-57 (201)
43 1ek0_A Protein (GTP-binding pr 98.8 3E-09 1E-13 63.1 4.0 41 28-68 2-42 (170)
44 2zej_A Dardarin, leucine-rich 98.8 2E-09 6.7E-14 65.9 3.1 40 29-68 2-43 (184)
45 2gco_A H9, RHO-related GTP-bin 98.8 3.8E-09 1.3E-13 65.4 4.4 41 26-66 22-62 (201)
46 2p5s_A RAS and EF-hand domain 98.8 1.5E-09 5.1E-14 67.1 2.5 43 25-67 24-66 (199)
47 1vg8_A RAS-related protein RAB 98.8 4.1E-09 1.4E-13 64.9 4.5 44 26-69 5-48 (207)
48 2y8e_A RAB-protein 6, GH09086P 98.8 3.2E-09 1.1E-13 63.6 3.8 42 27-68 12-53 (179)
49 2atx_A Small GTP binding prote 98.8 3.5E-09 1.2E-13 64.8 4.1 42 25-66 14-55 (194)
50 2hxs_A RAB-26, RAS-related pro 98.8 4.5E-10 1.5E-14 67.6 -0.0 41 27-67 4-44 (178)
51 1x3s_A RAS-related protein RAB 98.8 3.9E-09 1.3E-13 64.3 4.1 44 26-69 12-55 (195)
52 2a9k_A RAS-related protein RAL 98.8 5.7E-09 2E-13 62.9 4.8 41 26-66 15-55 (187)
53 3cpj_B GTP-binding protein YPT 98.8 2.1E-09 7.1E-14 67.7 2.9 44 25-68 9-52 (223)
54 1c1y_A RAS-related protein RAP 98.8 7.3E-09 2.5E-13 61.4 5.1 39 29-67 3-41 (167)
55 3kkq_A RAS-related protein M-R 98.8 5.5E-09 1.9E-13 63.3 4.5 42 25-66 14-55 (183)
56 2fn4_A P23, RAS-related protei 98.8 6.8E-09 2.3E-13 62.3 4.6 41 27-67 7-47 (181)
57 2iwr_A Centaurin gamma 1; ANK 98.8 3.5E-09 1.2E-13 63.9 3.2 38 28-66 6-43 (178)
58 1ky3_A GTP-binding protein YPT 98.8 2.7E-09 9.1E-14 64.1 2.6 43 26-68 5-47 (182)
59 2g6b_A RAS-related protein RAB 98.8 6.2E-09 2.1E-13 62.6 3.8 43 25-67 6-49 (180)
60 2atv_A RERG, RAS-like estrogen 98.8 1E-08 3.6E-13 63.0 4.8 42 26-67 25-66 (196)
61 3cph_A RAS-related protein SEC 98.7 4.9E-09 1.7E-13 64.8 3.2 44 25-68 16-59 (213)
62 3t5g_A GTP-binding protein RHE 98.7 8.6E-09 2.9E-13 62.3 4.2 39 28-66 5-43 (181)
63 2j0v_A RAC-like GTP-binding pr 98.7 7.9E-09 2.7E-13 64.2 3.9 41 27-67 7-47 (212)
64 2h57_A ADP-ribosylation factor 98.7 6.8E-09 2.3E-13 63.5 3.4 41 25-65 17-58 (190)
65 2erx_A GTP-binding protein DI- 98.7 1.4E-08 4.9E-13 60.3 4.7 39 29-67 3-41 (172)
66 2yc2_C IFT27, small RAB-relate 98.7 2E-09 6.7E-14 66.2 1.0 42 27-68 18-61 (208)
67 2g3y_A GTP-binding protein GEM 98.7 4E-09 1.4E-13 67.0 2.4 40 25-65 33-74 (211)
68 3bwd_D RAC-like GTP-binding pr 98.7 4.7E-09 1.6E-13 63.3 2.5 41 27-67 6-46 (182)
69 1kao_A RAP2A; GTP-binding prot 98.7 1.7E-08 5.8E-13 59.6 4.9 38 29-66 3-40 (167)
70 3t1o_A Gliding protein MGLA; G 98.7 1E-08 3.5E-13 62.3 4.0 46 24-70 9-65 (198)
71 1u8z_A RAS-related protein RAL 98.7 1.7E-08 5.7E-13 59.6 4.8 39 29-67 4-42 (168)
72 3gj0_A GTP-binding nuclear pro 98.7 2.9E-09 1E-13 66.7 1.2 45 24-68 10-54 (221)
73 3con_A GTPase NRAS; structural 98.7 2E-08 6.8E-13 61.2 4.9 40 27-66 19-58 (190)
74 1mh1_A RAC1; GTP-binding, GTPa 98.7 1.5E-08 5.3E-13 61.0 4.3 39 28-66 4-42 (186)
75 2j1l_A RHO-related GTP-binding 98.7 1.2E-08 4E-13 63.9 3.8 40 27-66 32-71 (214)
76 2bov_A RAla, RAS-related prote 98.7 2.1E-08 7.3E-13 61.5 4.9 40 27-66 12-51 (206)
77 2fv8_A H6, RHO-related GTP-bin 98.7 1.7E-08 5.9E-13 62.7 3.9 40 27-66 23-62 (207)
78 2gf0_A GTP-binding protein DI- 98.7 2.4E-08 8.2E-13 61.0 4.4 41 27-67 6-46 (199)
79 3cbq_A GTP-binding protein REM 98.7 4.6E-09 1.6E-13 65.2 1.1 38 25-62 19-56 (195)
80 2ce2_X GTPase HRAS; signaling 98.6 3.6E-08 1.2E-12 58.0 4.5 38 29-66 3-40 (166)
81 4dsu_A GTPase KRAS, isoform 2B 98.6 4.3E-08 1.5E-12 59.2 4.9 39 28-66 3-41 (189)
82 2h17_A ADP-ribosylation factor 98.6 6.9E-09 2.4E-13 63.1 1.3 39 24-63 16-54 (181)
83 3c5h_A Glucocorticoid receptor 98.6 9.4E-09 3.2E-13 66.6 1.7 46 24-69 14-72 (255)
84 4djt_A GTP-binding nuclear pro 98.6 2.2E-08 7.4E-13 62.4 3.0 42 25-66 7-48 (218)
85 3llu_A RAS-related GTP-binding 98.6 8.8E-09 3E-13 63.5 1.2 37 19-56 10-46 (196)
86 2cjw_A GTP-binding protein GEM 98.6 1.3E-08 4.6E-13 62.9 1.9 32 28-59 5-38 (192)
87 3q85_A GTP-binding protein REM 98.6 3.1E-08 1.1E-12 58.9 2.6 36 29-64 2-37 (169)
88 2nzj_A GTP-binding protein REM 98.5 2.7E-08 9.4E-13 59.4 2.3 31 28-58 3-33 (175)
89 2fh5_B SR-beta, signal recogni 98.5 8.5E-08 2.9E-12 59.5 4.4 36 27-62 5-40 (214)
90 2lkc_A Translation initiation 98.5 2.3E-08 7.9E-13 60.0 1.7 37 27-63 6-42 (178)
91 1ksh_A ARF-like protein 2; sma 98.5 9.5E-08 3.2E-12 57.9 4.3 38 27-65 16-53 (186)
92 1upt_A ARL1, ADP-ribosylation 98.5 1E-07 3.5E-12 56.6 4.3 37 28-65 6-42 (171)
93 3th5_A RAS-related C3 botulinu 97.9 1.1E-08 3.8E-13 63.3 0.0 42 25-66 26-67 (204)
94 1r8s_A ADP-ribosylation factor 98.5 4.6E-08 1.6E-12 57.9 2.5 34 30-64 1-34 (164)
95 2wji_A Ferrous iron transport 98.5 5.6E-08 1.9E-12 58.4 1.9 33 29-61 3-35 (165)
96 2wjg_A FEOB, ferrous iron tran 98.4 6.9E-08 2.4E-12 58.5 2.2 35 28-62 6-40 (188)
97 2cxx_A Probable GTP-binding pr 98.4 1.1E-07 3.8E-12 57.5 3.1 34 29-62 1-34 (190)
98 1zj6_A ADP-ribosylation factor 98.4 7.3E-08 2.5E-12 58.7 2.0 36 27-63 14-49 (187)
99 2wkq_A NPH1-1, RAS-related C3 98.4 2.9E-07 9.8E-12 60.3 4.7 41 27-67 153-193 (332)
100 1fzq_A ADP-ribosylation factor 98.4 8.7E-08 3E-12 58.4 1.9 37 27-64 14-50 (181)
101 1moz_A ARL1, ADP-ribosylation 98.4 4.5E-08 1.5E-12 59.0 0.5 36 27-63 16-51 (183)
102 1m2o_B GTP-binding protein SAR 98.4 2E-07 6.9E-12 57.3 3.3 37 27-64 21-57 (190)
103 2hf9_A Probable hydrogenase ni 98.4 8.9E-08 3.1E-12 59.9 1.7 40 28-67 37-76 (226)
104 2b6h_A ADP-ribosylation factor 98.4 1.1E-07 3.8E-12 58.6 1.9 37 27-64 27-63 (192)
105 2qu8_A Putative nucleolar GTP- 98.4 1.5E-07 5E-12 59.4 2.3 29 27-55 27-55 (228)
106 3r7w_B Gtpase2, GTP-binding pr 98.4 1.5E-07 5.1E-12 64.1 2.4 37 31-67 1-40 (331)
107 1nrj_B SR-beta, signal recogni 98.4 1.5E-07 5.2E-12 58.5 2.2 40 26-65 9-51 (218)
108 3dpu_A RAB family protein; roc 98.4 1.8E-07 6.3E-12 66.1 2.9 43 26-68 38-80 (535)
109 1svi_A GTP-binding protein YSX 98.3 1.4E-07 4.7E-12 57.5 1.7 37 27-63 21-57 (195)
110 1f6b_A SAR1; gtpases, N-termin 98.3 1.8E-07 6.1E-12 57.9 2.0 35 28-63 24-58 (198)
111 2x77_A ADP-ribosylation factor 98.3 1.1E-07 3.8E-12 57.8 1.0 37 27-64 20-56 (189)
112 2ged_A SR-beta, signal recogni 98.3 2.5E-07 8.4E-12 56.4 2.5 39 27-65 46-87 (193)
113 3q72_A GTP-binding protein RAD 98.3 3.1E-07 1E-11 54.4 2.6 27 29-55 2-28 (166)
114 3r7w_A Gtpase1, GTP-binding pr 98.3 6.7E-07 2.3E-11 59.4 4.0 40 28-67 2-44 (307)
115 3o47_A ADP-ribosylation factor 98.3 4.2E-07 1.4E-11 61.0 3.0 39 27-66 163-201 (329)
116 3pqc_A Probable GTP-binding pr 98.2 6.7E-07 2.3E-11 54.1 2.7 29 27-55 21-49 (195)
117 3lvq_E ARF-GAP with SH3 domain 98.2 1.7E-06 5.7E-11 60.3 4.6 41 26-67 319-359 (497)
118 3t5d_A Septin-7; GTP-binding p 98.2 7.9E-07 2.7E-11 57.9 2.4 41 26-66 5-53 (274)
119 3lxx_A GTPase IMAP family memb 98.2 8.1E-07 2.8E-11 56.5 2.3 35 26-60 26-60 (239)
120 2dyk_A GTP-binding protein; GT 98.1 1.1E-06 3.7E-11 51.6 2.2 26 30-55 2-27 (161)
121 1pui_A ENGB, probable GTP-bind 98.1 1.3E-06 4.4E-11 53.9 2.1 36 28-63 25-60 (210)
122 3k53_A Ferrous iron transport 98.0 1.2E-06 4.2E-11 56.9 1.5 36 29-64 3-38 (271)
123 2gj8_A MNME, tRNA modification 98.0 2E-06 6.9E-11 52.1 2.2 26 29-54 4-29 (172)
124 3a1s_A Iron(II) transport prot 98.0 4.1E-06 1.4E-10 54.4 2.8 28 28-55 4-31 (258)
125 3lxw_A GTPase IMAP family memb 97.9 7.1E-06 2.4E-10 52.8 3.2 30 26-55 18-47 (247)
126 3i8s_A Ferrous iron transport 97.9 3.9E-06 1.3E-10 54.9 1.7 28 29-56 3-30 (274)
127 3b1v_A Ferrous iron uptake tra 97.9 8E-06 2.7E-10 53.7 3.2 26 28-53 2-27 (272)
128 2xtp_A GTPase IMAP family memb 97.9 1E-05 3.4E-10 51.9 3.5 34 27-60 20-54 (260)
129 2qag_A Septin-2, protein NEDD5 97.9 9.9E-06 3.4E-10 55.1 3.6 33 26-58 34-67 (361)
130 3tif_A Uncharacterized ABC tra 97.9 2.4E-05 8.1E-10 50.4 5.2 38 32-75 34-71 (235)
131 4dhe_A Probable GTP-binding pr 97.8 6.3E-06 2.2E-10 51.1 2.2 27 27-53 27-53 (223)
132 3rlf_A Maltose/maltodextrin im 97.7 3.8E-05 1.3E-09 53.0 5.0 38 32-75 32-69 (381)
133 3iby_A Ferrous iron transport 97.7 6.7E-06 2.3E-10 53.4 1.1 26 30-55 2-27 (256)
134 2ff7_A Alpha-hemolysin translo 97.7 4.7E-05 1.6E-09 49.3 5.1 38 31-74 37-74 (247)
135 2qnr_A Septin-2, protein NEDD5 97.7 9.3E-06 3.2E-10 53.9 1.8 34 25-58 14-48 (301)
136 2qag_C Septin-7; cell cycle, c 97.7 3.2E-05 1.1E-09 53.9 4.5 30 25-54 27-56 (418)
137 3def_A T7I23.11 protein; chlor 97.7 2.7E-05 9.1E-10 50.3 3.5 27 28-54 35-61 (262)
138 4g1u_C Hemin import ATP-bindin 97.7 4E-05 1.4E-09 50.3 4.3 38 32-75 40-77 (266)
139 3nh6_A ATP-binding cassette SU 97.7 3.5E-05 1.2E-09 51.7 4.0 39 31-75 82-120 (306)
140 2pcj_A ABC transporter, lipopr 97.7 5.8E-05 2E-09 48.2 4.9 37 32-74 33-69 (224)
141 1mky_A Probable GTP-binding pr 97.7 3.6E-05 1.2E-09 53.2 4.0 27 28-54 179-205 (439)
142 2yyz_A Sugar ABC transporter, 97.7 5.8E-05 2E-09 51.7 4.9 37 32-74 32-68 (359)
143 3gfo_A Cobalt import ATP-bindi 97.7 6.5E-05 2.2E-09 49.6 4.8 36 32-73 37-72 (275)
144 2it1_A 362AA long hypothetical 97.7 7.1E-05 2.4E-09 51.3 5.1 37 32-74 32-68 (362)
145 2aka_B Dynamin-1; fusion prote 97.6 3.1E-05 1.1E-09 50.2 3.2 29 27-55 24-52 (299)
146 1v43_A Sugar-binding transport 97.6 7.3E-05 2.5E-09 51.4 5.1 37 32-74 40-76 (372)
147 3tui_C Methionine import ATP-b 97.6 6.8E-05 2.3E-09 51.6 4.9 38 32-75 57-94 (366)
148 1z47_A CYSA, putative ABC-tran 97.6 6.9E-05 2.4E-09 51.2 4.9 37 32-74 44-80 (355)
149 3fvq_A Fe(3+) IONS import ATP- 97.6 4.3E-05 1.5E-09 52.4 3.9 36 32-73 33-68 (359)
150 3gd7_A Fusion complex of cysti 97.6 5.6E-05 1.9E-09 52.2 4.5 38 31-75 49-86 (390)
151 1ji0_A ABC transporter; ATP bi 97.6 9.3E-05 3.2E-09 47.7 5.2 37 32-74 35-71 (240)
152 1g6h_A High-affinity branched- 97.6 9.4E-05 3.2E-09 48.1 5.2 37 32-74 36-72 (257)
153 3sop_A Neuronal-specific septi 97.6 2.1E-05 7.2E-10 51.6 2.0 24 28-51 1-24 (270)
154 1b0u_A Histidine permease; ABC 97.6 7.9E-05 2.7E-09 48.6 4.8 37 32-74 35-71 (262)
155 2onk_A Molybdate/tungstate ABC 97.6 9.4E-05 3.2E-09 47.8 5.0 38 31-74 26-63 (240)
156 1h65_A Chloroplast outer envel 97.6 3.1E-05 1.1E-09 50.1 2.8 27 28-54 38-64 (270)
157 1mv5_A LMRA, multidrug resista 97.6 6.3E-05 2.1E-09 48.5 4.0 38 31-74 30-67 (243)
158 2qi9_C Vitamin B12 import ATP- 97.6 6.5E-05 2.2E-09 48.9 4.1 36 31-73 28-63 (249)
159 2ihy_A ABC transporter, ATP-bi 97.6 0.00011 3.9E-09 48.4 5.2 37 32-74 50-86 (279)
160 3d31_A Sulfate/molybdate ABC t 97.6 6.5E-05 2.2E-09 51.2 4.1 38 31-74 28-65 (348)
161 2ixe_A Antigen peptide transpo 97.6 9.1E-05 3.1E-09 48.6 4.6 37 32-74 48-84 (271)
162 2olj_A Amino acid ABC transpor 97.6 0.00011 3.7E-09 48.2 4.9 36 32-73 53-88 (263)
163 1g29_1 MALK, maltose transport 97.5 8.9E-05 3.1E-09 50.9 4.2 36 32-73 32-67 (372)
164 1sgw_A Putative ABC transporte 97.5 0.00013 4.6E-09 46.4 4.4 36 32-73 38-73 (214)
165 1vpl_A ABC transporter, ATP-bi 97.5 0.00018 6.2E-09 46.9 5.1 37 32-74 44-80 (256)
166 2hjg_A GTP-binding protein ENG 97.5 3.4E-05 1.2E-09 53.3 1.6 27 28-54 174-200 (436)
167 2yz2_A Putative ABC transporte 97.5 0.00018 6.2E-09 47.0 4.9 37 31-73 35-71 (266)
168 2wsm_A Hydrogenase expression/ 97.5 3E-05 1E-09 48.1 1.1 28 28-55 29-56 (221)
169 2ghi_A Transport protein; mult 97.4 0.00016 5.6E-09 47.1 4.4 37 31-74 48-84 (260)
170 2yl4_A ATP-binding cassette SU 97.4 0.0002 6.9E-09 51.3 5.1 39 31-75 372-410 (595)
171 1wf3_A GTP-binding protein; GT 97.4 9.2E-05 3.2E-09 49.1 3.1 28 28-55 6-33 (301)
172 1oxx_K GLCV, glucose, ABC tran 97.4 8.9E-05 3E-09 50.5 2.8 36 32-73 34-69 (353)
173 2d2e_A SUFC protein; ABC-ATPas 97.4 0.00025 8.6E-09 45.9 4.8 39 32-74 32-70 (250)
174 3iev_A GTP-binding protein ERA 97.4 0.00016 5.6E-09 47.9 4.0 32 24-55 5-36 (308)
175 3t34_A Dynamin-related protein 97.4 0.00013 4.3E-09 49.2 3.3 27 29-55 34-60 (360)
176 1kgd_A CASK, peripheral plasma 97.4 8.5E-05 2.9E-09 45.4 2.2 21 31-51 7-27 (180)
177 3qf4_B Uncharacterized ABC tra 97.4 0.00021 7E-09 51.4 4.5 38 31-74 383-420 (598)
178 3b60_A Lipid A export ATP-bind 97.4 0.00022 7.7E-09 50.9 4.7 39 31-75 371-409 (582)
179 4a82_A Cystic fibrosis transme 97.3 0.00018 6.2E-09 51.4 4.1 38 31-74 369-406 (578)
180 2pjz_A Hypothetical protein ST 97.3 0.00027 9.2E-09 46.3 4.5 36 31-73 32-67 (263)
181 1s0u_A EIF-2-gamma, translatio 97.3 0.00016 5.3E-09 49.6 3.5 40 27-66 6-50 (408)
182 1mky_A Probable GTP-binding pr 97.3 5.5E-05 1.9E-09 52.3 1.0 25 30-54 2-26 (439)
183 3qf4_A ABC transporter, ATP-bi 97.3 0.00023 7.8E-09 51.1 4.0 38 31-74 371-408 (587)
184 1lvg_A Guanylate kinase, GMP k 97.3 0.00011 3.8E-09 45.7 2.2 20 31-50 6-25 (198)
185 1ex7_A Guanylate kinase; subst 97.3 0.00012 4E-09 45.9 2.2 20 32-51 4-23 (186)
186 2zu0_C Probable ATP-dependent 97.3 0.00029 9.8E-09 46.1 4.1 39 32-74 49-87 (267)
187 1ye8_A Protein THEP1, hypothet 97.3 0.00014 4.8E-09 44.9 2.4 20 31-50 2-21 (178)
188 4f4c_A Multidrug resistance pr 97.3 0.00022 7.5E-09 55.4 4.0 39 31-75 1107-1145(1321)
189 3qq5_A Small GTP-binding prote 97.2 8E-05 2.7E-09 51.9 1.2 30 25-54 30-59 (423)
190 3gee_A MNME, tRNA modification 97.2 9.4E-05 3.2E-09 52.1 1.4 26 28-53 232-257 (476)
191 3b5x_A Lipid A export ATP-bind 97.2 0.00025 8.4E-09 50.7 3.6 38 31-74 371-408 (582)
192 2hjg_A GTP-binding protein ENG 97.2 0.00011 3.8E-09 50.7 1.7 27 29-55 3-29 (436)
193 1kk1_A EIF2gamma; initiation o 97.2 0.00027 9.2E-09 48.4 3.5 39 27-65 8-51 (410)
194 3a00_A Guanylate kinase, GMP k 97.2 0.00016 5.5E-09 44.3 2.1 19 32-50 4-22 (186)
195 2qtf_A Protein HFLX, GTP-bindi 97.2 0.00026 9.1E-09 48.2 3.3 25 30-54 179-204 (364)
196 1ega_A Protein (GTP-binding pr 97.2 0.00019 6.6E-09 47.4 2.4 26 29-54 8-33 (301)
197 2x2e_A Dynamin-1; nitration, h 97.1 0.00023 7.9E-09 47.9 2.7 29 27-55 29-57 (353)
198 2cbz_A Multidrug resistance-as 97.1 0.00051 1.8E-08 44.1 4.2 23 31-54 33-55 (237)
199 4dcu_A GTP-binding protein ENG 97.1 0.00012 4.1E-09 50.8 1.3 27 29-55 23-49 (456)
200 4f4c_A Multidrug resistance pr 97.1 0.00053 1.8E-08 53.3 4.8 39 31-75 446-484 (1321)
201 4gp7_A Metallophosphoesterase; 97.1 0.00018 6.1E-09 43.7 1.9 18 31-48 11-28 (171)
202 3ney_A 55 kDa erythrocyte memb 97.1 0.00021 7.2E-09 45.2 2.2 21 31-51 21-41 (197)
203 1jal_A YCHF protein; nucleotid 97.1 0.00025 8.6E-09 48.7 2.8 25 30-54 3-27 (363)
204 3tr0_A Guanylate kinase, GMP k 97.1 0.00022 7.4E-09 43.7 2.2 21 31-51 9-29 (205)
205 2ohf_A Protein OLA1, GTP-bindi 97.1 0.00012 4.1E-09 50.8 1.1 28 27-54 20-47 (396)
206 1s96_A Guanylate kinase, GMP k 97.1 0.00021 7.3E-09 45.5 2.2 21 31-51 18-38 (219)
207 2pze_A Cystic fibrosis transme 97.1 0.00072 2.5E-08 43.2 4.7 23 31-54 36-58 (229)
208 1jwy_B Dynamin A GTPase domain 97.1 0.00026 8.7E-09 46.2 2.6 28 27-54 22-49 (315)
209 3j2k_7 ERF3, eukaryotic polype 97.1 0.0006 2.1E-08 47.3 4.6 25 26-50 14-38 (439)
210 1znw_A Guanylate kinase, GMP k 97.1 0.00022 7.6E-09 44.3 2.2 20 31-50 22-41 (207)
211 2e87_A Hypothetical protein PH 97.1 0.00027 9.1E-09 47.6 2.5 27 28-54 166-192 (357)
212 1z6g_A Guanylate kinase; struc 97.1 0.00024 8.4E-09 44.8 2.2 21 31-51 25-45 (218)
213 3geh_A MNME, tRNA modification 97.1 0.00024 8.2E-09 49.9 2.3 27 28-54 223-249 (462)
214 3tau_A Guanylate kinase, GMP k 97.1 0.00027 9.3E-09 44.1 2.2 21 31-51 10-30 (208)
215 3sjy_A Translation initiation 97.0 0.00046 1.6E-08 47.2 3.4 27 26-52 5-31 (403)
216 3cnl_A YLQF, putative uncharac 97.0 0.00034 1.2E-08 45.6 2.5 25 30-54 100-124 (262)
217 3izy_P Translation initiation 97.0 6E-05 2.1E-09 54.0 -1.2 37 29-65 4-40 (537)
218 1zp6_A Hypothetical protein AT 97.0 0.00032 1.1E-08 42.5 2.0 21 31-51 11-31 (191)
219 3g5u_A MCG1178, multidrug resi 96.9 0.00079 2.7E-08 52.2 4.3 38 31-74 418-455 (1284)
220 1u0l_A Probable GTPase ENGC; p 96.9 0.00062 2.1E-08 45.0 3.2 22 30-51 170-191 (301)
221 3c8u_A Fructokinase; YP_612366 96.9 0.0005 1.7E-08 42.7 2.5 22 29-50 22-43 (208)
222 1xzp_A Probable tRNA modificat 96.9 0.00021 7.2E-09 50.5 0.8 26 29-54 243-268 (482)
223 2qor_A Guanylate kinase; phosp 96.9 0.00046 1.6E-08 42.7 2.2 22 30-51 13-34 (204)
224 3p26_A Elongation factor 1 alp 96.9 0.00042 1.4E-08 48.5 2.2 27 26-52 30-56 (483)
225 2ehv_A Hypothetical protein PH 96.8 0.00052 1.8E-08 43.0 2.2 20 31-50 32-51 (251)
226 4dcu_A GTP-binding protein ENG 96.8 0.00058 2E-08 47.4 2.6 27 27-53 193-219 (456)
227 1wxq_A GTP-binding protein; st 96.8 0.0005 1.7E-08 47.4 2.1 24 30-53 1-24 (397)
228 3g5u_A MCG1178, multidrug resi 96.8 0.0014 4.9E-08 50.8 4.8 39 31-75 1061-1099(1284)
229 2bbs_A Cystic fibrosis transme 96.8 0.0014 4.7E-08 43.5 4.1 22 31-53 66-87 (290)
230 3lnc_A Guanylate kinase, GMP k 96.8 0.00049 1.7E-08 43.3 1.9 20 31-50 29-48 (231)
231 3kb2_A SPBC2 prophage-derived 96.8 0.00066 2.3E-08 40.2 2.3 21 31-51 3-23 (173)
232 2qag_B Septin-6, protein NEDD5 96.8 0.00069 2.4E-08 47.4 2.7 23 29-51 42-64 (427)
233 2j41_A Guanylate kinase; GMP, 96.8 0.00064 2.2E-08 41.5 2.2 21 31-51 8-28 (207)
234 4a74_A DNA repair and recombin 96.8 0.00056 1.9E-08 42.3 1.9 21 31-51 27-47 (231)
235 2qpt_A EH domain-containing pr 96.8 0.0012 4.2E-08 47.2 3.8 29 27-55 63-91 (550)
236 2bdt_A BH3686; alpha-beta prot 96.7 0.00068 2.3E-08 41.2 2.2 21 31-51 4-24 (189)
237 1lnz_A SPO0B-associated GTP-bi 96.7 0.00085 2.9E-08 45.4 2.8 24 30-53 159-182 (342)
238 1htw_A HI0065; nucleotide-bind 96.7 0.0007 2.4E-08 41.2 2.2 21 31-51 35-55 (158)
239 1kag_A SKI, shikimate kinase I 96.7 0.00072 2.5E-08 40.3 2.2 21 30-50 5-25 (173)
240 2dby_A GTP-binding protein; GD 96.7 0.00062 2.1E-08 46.7 2.0 24 30-53 2-25 (368)
241 1jbk_A CLPB protein; beta barr 96.7 0.00079 2.7E-08 39.8 2.2 21 31-51 45-65 (195)
242 3vaa_A Shikimate kinase, SK; s 96.7 0.00086 2.9E-08 41.3 2.4 22 30-51 26-47 (199)
243 3mca_A HBS1, elongation factor 96.7 0.0019 6.6E-08 46.5 4.4 25 26-50 174-198 (592)
244 4eun_A Thermoresistant glucoki 96.7 0.00085 2.9E-08 41.4 2.2 21 30-50 30-50 (200)
245 2bbw_A Adenylate kinase 4, AK4 96.7 0.00091 3.1E-08 42.5 2.4 21 30-50 28-48 (246)
246 3uie_A Adenylyl-sulfate kinase 96.7 0.00085 2.9E-08 41.4 2.2 22 29-50 25-46 (200)
247 2nq2_C Hypothetical ABC transp 96.7 0.0013 4.4E-08 42.7 3.1 23 31-54 33-55 (253)
248 1qhx_A CPT, protein (chloramph 96.6 0.00094 3.2E-08 40.0 2.2 21 31-51 5-25 (178)
249 1ni3_A YCHF GTPase, YCHF GTP-b 96.6 0.0011 3.8E-08 45.8 2.7 27 28-54 19-45 (392)
250 3ec2_A DNA replication protein 96.6 0.00078 2.7E-08 40.7 1.7 21 30-50 39-59 (180)
251 2dy1_A Elongation factor G; tr 96.6 0.0015 5.1E-08 47.6 3.4 27 27-53 7-33 (665)
252 1lw7_A Transcriptional regulat 96.6 0.00088 3E-08 45.1 2.1 22 29-50 170-191 (365)
253 3b85_A Phosphate starvation-in 96.6 0.0012 4.1E-08 41.7 2.6 20 31-50 24-43 (208)
254 1puj_A YLQF, conserved hypothe 96.6 0.0011 3.8E-08 43.6 2.5 26 28-53 119-144 (282)
255 2i3b_A HCR-ntpase, human cance 96.6 0.001 3.4E-08 41.5 2.2 20 31-50 3-22 (189)
256 1wb1_A Translation elongation 96.6 0.0013 4.5E-08 46.2 3.0 26 28-53 18-43 (482)
257 3asz_A Uridine kinase; cytidin 96.6 0.0011 3.7E-08 40.9 2.3 21 30-50 7-27 (211)
258 3lw7_A Adenylate kinase relate 96.6 0.0012 4E-08 38.8 2.3 20 30-49 2-21 (179)
259 3izq_1 HBS1P, elongation facto 96.6 0.0011 3.7E-08 48.0 2.5 26 27-52 165-190 (611)
260 2cdn_A Adenylate kinase; phosp 96.6 0.0013 4.5E-08 40.3 2.6 24 28-51 19-42 (201)
261 3fb4_A Adenylate kinase; psych 96.6 0.0012 4E-08 40.9 2.4 22 30-51 1-22 (216)
262 1cke_A CK, MSSA, protein (cyti 96.6 0.0012 4.2E-08 40.9 2.4 21 30-50 6-26 (227)
263 3t61_A Gluconokinase; PSI-biol 96.5 0.0011 3.9E-08 40.7 2.2 22 30-51 19-40 (202)
264 3dl0_A Adenylate kinase; phosp 96.5 0.0013 4.5E-08 40.7 2.4 22 30-51 1-22 (216)
265 2if2_A Dephospho-COA kinase; a 96.5 0.0012 4.3E-08 40.4 2.2 22 30-51 2-23 (204)
266 2www_A Methylmalonic aciduria 96.5 0.0014 4.8E-08 44.2 2.6 23 29-51 74-96 (349)
267 1nks_A Adenylate kinase; therm 96.5 0.0014 4.8E-08 39.3 2.4 22 30-51 2-23 (194)
268 1zun_B Sulfate adenylate trans 96.5 0.0017 5.7E-08 44.9 2.9 26 27-52 22-47 (434)
269 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0013 4.5E-08 40.5 2.2 21 31-51 25-45 (235)
270 2p65_A Hypothetical protein PF 96.5 0.00096 3.3E-08 39.6 1.5 22 30-51 44-65 (187)
271 1knq_A Gluconate kinase; ALFA/ 96.5 0.0015 5.2E-08 39.1 2.4 21 30-50 9-29 (175)
272 2jaq_A Deoxyguanosine kinase; 96.5 0.0015 5.3E-08 39.6 2.4 21 31-51 2-22 (205)
273 3trf_A Shikimate kinase, SK; a 96.5 0.0016 5.4E-08 39.3 2.4 22 30-51 6-27 (185)
274 1ukz_A Uridylate kinase; trans 96.5 0.002 7E-08 39.4 2.9 23 29-51 15-37 (203)
275 2j69_A Bacterial dynamin-like 96.4 0.0018 6E-08 47.5 3.0 28 27-54 67-94 (695)
276 1ly1_A Polynucleotide kinase; 96.4 0.0019 6.4E-08 38.5 2.6 22 30-51 3-24 (181)
277 2eyu_A Twitching motility prot 96.4 0.0014 4.8E-08 42.7 2.2 20 31-50 27-46 (261)
278 2vp4_A Deoxynucleoside kinase; 96.4 0.0022 7.4E-08 40.5 2.9 22 29-50 20-41 (230)
279 1jny_A EF-1-alpha, elongation 96.4 0.0016 5.5E-08 45.0 2.5 25 28-52 5-29 (435)
280 1np6_A Molybdopterin-guanine d 96.4 0.0016 5.4E-08 40.2 2.2 22 30-51 7-28 (174)
281 1kht_A Adenylate kinase; phosp 96.4 0.0018 6.2E-08 38.9 2.4 22 30-51 4-25 (192)
282 2c78_A Elongation factor TU-A; 96.4 0.002 6.9E-08 44.0 2.8 25 27-51 9-33 (405)
283 2yv5_A YJEQ protein; hydrolase 96.4 0.0016 5.4E-08 43.1 2.2 21 30-50 166-186 (302)
284 2kjq_A DNAA-related protein; s 96.4 0.0018 6.1E-08 38.7 2.2 20 31-50 38-57 (149)
285 2v9p_A Replication protein E1; 96.4 0.0017 5.9E-08 43.5 2.3 19 31-49 128-146 (305)
286 1d2e_A Elongation factor TU (E 96.3 0.0021 7.3E-08 43.8 2.8 23 29-51 3-25 (397)
287 1ixz_A ATP-dependent metallopr 96.3 0.0018 6.1E-08 41.1 2.2 19 32-50 52-70 (254)
288 1jjv_A Dephospho-COA kinase; P 96.3 0.0022 7.5E-08 39.4 2.6 22 30-51 3-24 (206)
289 3bos_A Putative DNA replicatio 96.3 0.0018 6.2E-08 39.9 2.2 22 30-51 53-74 (242)
290 2f1r_A Molybdopterin-guanine d 96.3 0.0008 2.8E-08 41.4 0.5 20 31-50 4-23 (171)
291 2rcn_A Probable GTPase ENGC; Y 96.3 0.002 6.8E-08 44.1 2.4 21 31-51 217-237 (358)
292 1njg_A DNA polymerase III subu 96.3 0.002 6.7E-08 39.3 2.2 21 31-51 47-67 (250)
293 1ak2_A Adenylate kinase isoenz 96.3 0.0024 8.2E-08 40.3 2.5 23 29-51 16-38 (233)
294 1n0w_A DNA repair protein RAD5 96.3 0.0021 7.1E-08 40.1 2.2 21 31-51 26-46 (243)
295 2dpy_A FLII, flagellum-specifi 96.3 0.0021 7.3E-08 44.8 2.4 35 31-71 159-193 (438)
296 1gvn_B Zeta; postsegregational 96.2 0.0022 7.4E-08 42.2 2.3 22 30-51 34-55 (287)
297 3cm0_A Adenylate kinase; ATP-b 96.2 0.0027 9.3E-08 38.2 2.6 22 30-51 5-26 (186)
298 3aez_A Pantothenate kinase; tr 96.2 0.0021 7.2E-08 42.9 2.2 22 29-50 90-111 (312)
299 3umf_A Adenylate kinase; rossm 96.2 0.0029 9.9E-08 40.4 2.8 23 29-51 28-51 (217)
300 2chg_A Replication factor C sm 96.2 0.0022 7.7E-08 38.7 2.2 20 32-51 41-60 (226)
301 2cvh_A DNA repair and recombin 96.2 0.0022 7.6E-08 39.3 2.2 21 31-51 22-42 (220)
302 1rj9_A FTSY, signal recognitio 96.2 0.0021 7.2E-08 42.8 2.2 21 30-50 103-123 (304)
303 3euj_A Chromosome partition pr 96.2 0.0011 3.8E-08 47.0 0.8 20 31-50 31-50 (483)
304 3n70_A Transport activator; si 96.2 0.0048 1.7E-07 36.2 3.5 22 30-51 25-46 (145)
305 1zo1_I IF2, translation initia 96.2 0.0011 3.6E-08 47.3 0.6 29 28-56 3-31 (501)
306 3tlx_A Adenylate kinase 2; str 96.2 0.0029 1E-07 40.4 2.6 24 28-51 28-51 (243)
307 2rhm_A Putative kinase; P-loop 96.2 0.0026 9E-08 38.3 2.3 22 30-51 6-27 (193)
308 1via_A Shikimate kinase; struc 96.2 0.0025 8.5E-08 38.3 2.1 21 31-51 6-26 (175)
309 1f60_A Elongation factor EEF1A 96.2 0.0026 8.9E-08 44.4 2.4 24 28-51 6-29 (458)
310 1g7s_A Translation initiation 96.1 0.0023 8E-08 46.2 2.3 27 29-55 5-31 (594)
311 2qen_A Walker-type ATPase; unk 96.1 0.0027 9.1E-08 41.3 2.2 22 31-52 33-54 (350)
312 1yrb_A ATP(GTP)binding protein 96.1 0.0053 1.8E-07 38.8 3.6 27 25-51 10-36 (262)
313 2jeo_A Uridine-cytidine kinase 96.1 0.0032 1.1E-07 40.0 2.6 22 30-51 26-47 (245)
314 1iy2_A ATP-dependent metallopr 96.1 0.0027 9.2E-08 40.9 2.2 19 32-50 76-94 (278)
315 1zcb_A G alpha I/13; GTP-bindi 96.1 0.0031 1E-07 43.0 2.6 24 26-49 30-53 (362)
316 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0037 1.3E-07 44.5 3.1 23 31-54 49-71 (538)
317 3iij_A Coilin-interacting nucl 96.1 0.0029 9.8E-08 38.1 2.2 21 30-50 12-32 (180)
318 4e22_A Cytidylate kinase; P-lo 96.1 0.0031 1.1E-07 40.5 2.4 22 29-50 27-48 (252)
319 2qt1_A Nicotinamide riboside k 96.1 0.0034 1.2E-07 38.6 2.5 23 29-51 21-43 (207)
320 3tqc_A Pantothenate kinase; bi 96.1 0.0033 1.1E-07 42.4 2.6 22 29-50 92-113 (321)
321 3tr5_A RF-3, peptide chain rel 96.1 0.0022 7.7E-08 45.7 1.9 25 26-50 10-34 (528)
322 2w58_A DNAI, primosome compone 96.1 0.0029 1E-07 38.7 2.2 22 30-51 55-76 (202)
323 2xtz_A Guanine nucleotide-bind 96.1 0.0037 1.3E-07 42.5 2.9 26 25-50 5-30 (354)
324 1cr0_A DNA primase/helicase; R 96.1 0.0024 8.3E-08 41.5 1.9 21 31-51 37-57 (296)
325 1bif_A 6-phosphofructo-2-kinas 96.1 0.0027 9.1E-08 44.2 2.1 27 27-53 37-63 (469)
326 1odf_A YGR205W, hypothetical 3 96.1 0.0035 1.2E-07 41.4 2.6 23 28-50 30-52 (290)
327 3p32_A Probable GTPase RV1496/ 96.1 0.0034 1.2E-07 42.2 2.6 24 28-51 78-101 (355)
328 1e4v_A Adenylate kinase; trans 96.0 0.0029 1E-07 39.2 2.1 22 30-51 1-22 (214)
329 2plr_A DTMP kinase, probable t 96.0 0.004 1.4E-07 37.9 2.6 22 30-51 5-26 (213)
330 1y63_A LMAJ004144AAA protein; 96.0 0.0036 1.2E-07 38.1 2.4 22 30-51 11-32 (184)
331 2z0h_A DTMP kinase, thymidylat 96.0 0.0036 1.2E-07 37.8 2.4 21 31-51 2-22 (197)
332 3b9q_A Chloroplast SRP recepto 96.0 0.0031 1.1E-07 41.9 2.2 21 30-50 101-121 (302)
333 2fna_A Conserved hypothetical 96.0 0.0027 9.3E-08 41.3 1.9 21 31-51 32-52 (357)
334 2gza_A Type IV secretion syste 96.0 0.0038 1.3E-07 42.3 2.6 20 31-50 177-196 (361)
335 3e70_C DPA, signal recognition 96.0 0.0031 1.1E-07 42.5 2.2 22 29-50 129-150 (328)
336 2qm8_A GTPase/ATPase; G protei 96.0 0.0035 1.2E-07 42.2 2.4 22 29-50 55-76 (337)
337 1zd8_A GTP:AMP phosphotransfer 96.0 0.0033 1.1E-07 39.4 2.1 22 30-51 8-29 (227)
338 1in4_A RUVB, holliday junction 96.0 0.0033 1.1E-07 41.8 2.2 20 31-50 53-72 (334)
339 1lv7_A FTSH; alpha/beta domain 96.0 0.0034 1.2E-07 39.8 2.2 20 31-50 47-66 (257)
340 2x8a_A Nuclear valosin-contain 96.0 0.0033 1.1E-07 41.0 2.2 19 32-50 47-65 (274)
341 1dar_A EF-G, elongation factor 96.0 0.0053 1.8E-07 44.9 3.5 26 26-51 9-34 (691)
342 1tq4_A IIGP1, interferon-induc 96.0 0.0052 1.8E-07 42.7 3.2 21 31-51 71-91 (413)
343 2v54_A DTMP kinase, thymidylat 96.0 0.0041 1.4E-07 37.8 2.4 22 30-51 5-26 (204)
344 3kta_A Chromosome segregation 96.0 0.0032 1.1E-07 37.9 1.9 18 31-48 28-45 (182)
345 2pt5_A Shikimate kinase, SK; a 96.0 0.0043 1.5E-07 36.7 2.4 21 31-51 2-22 (168)
346 2qby_A CDC6 homolog 1, cell di 95.9 0.0031 1.1E-07 41.4 1.9 21 31-51 47-67 (386)
347 1tev_A UMP-CMP kinase; ploop, 95.9 0.0047 1.6E-07 37.0 2.6 22 30-51 4-25 (196)
348 4fid_A G protein alpha subunit 95.9 0.0036 1.2E-07 42.6 2.3 22 27-48 3-24 (340)
349 1rz3_A Hypothetical protein rb 95.9 0.004 1.4E-07 38.4 2.3 22 29-50 22-43 (201)
350 1zak_A Adenylate kinase; ATP:A 95.9 0.0031 1.1E-07 39.3 1.8 22 30-51 6-27 (222)
351 1aky_A Adenylate kinase; ATP:A 95.9 0.0043 1.5E-07 38.6 2.4 22 30-51 5-26 (220)
352 2ze6_A Isopentenyl transferase 95.9 0.0038 1.3E-07 40.2 2.2 20 31-50 3-22 (253)
353 2h5e_A Peptide chain release f 95.9 0.0036 1.2E-07 44.6 2.3 25 27-51 11-35 (529)
354 3ohm_A Guanine nucleotide-bind 95.9 0.0047 1.6E-07 41.8 2.7 23 26-48 4-26 (327)
355 3lda_A DNA repair protein RAD5 95.9 0.0062 2.1E-07 42.1 3.3 20 31-50 180-199 (400)
356 3sr0_A Adenylate kinase; phosp 95.9 0.0045 1.5E-07 39.0 2.4 22 30-51 1-22 (206)
357 3jvv_A Twitching mobility prot 95.9 0.0038 1.3E-07 42.5 2.2 20 31-50 125-144 (356)
358 1nlf_A Regulatory protein REPA 95.9 0.0035 1.2E-07 40.5 1.9 21 31-51 32-52 (279)
359 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.0043 1.5E-07 39.1 2.3 21 31-51 41-61 (262)
360 1nij_A Hypothetical protein YJ 95.8 0.0036 1.2E-07 41.6 1.9 22 31-52 6-27 (318)
361 2dr3_A UPF0273 protein PH0284; 95.8 0.0038 1.3E-07 38.8 1.9 21 31-51 25-45 (247)
362 1sq5_A Pantothenate kinase; P- 95.8 0.0045 1.5E-07 40.9 2.3 22 29-50 80-101 (308)
363 1l8q_A Chromosomal replication 95.8 0.0041 1.4E-07 40.8 2.1 21 31-51 39-59 (324)
364 2xb4_A Adenylate kinase; ATP-b 95.8 0.005 1.7E-07 38.6 2.4 21 31-51 2-22 (223)
365 1t9h_A YLOQ, probable GTPase E 95.8 0.0013 4.4E-08 44.1 -0.4 22 30-51 174-195 (307)
366 3h4m_A Proteasome-activating n 95.8 0.0044 1.5E-07 39.7 2.1 22 30-51 52-73 (285)
367 2bwj_A Adenylate kinase 5; pho 95.8 0.0046 1.6E-07 37.4 2.1 23 29-51 12-34 (199)
368 2c95_A Adenylate kinase 1; tra 95.8 0.0047 1.6E-07 37.3 2.1 22 30-51 10-31 (196)
369 1xjc_A MOBB protein homolog; s 95.8 0.0051 1.7E-07 38.0 2.2 22 30-51 5-26 (169)
370 1uf9_A TT1252 protein; P-loop, 95.7 0.0057 1.9E-07 37.1 2.4 23 29-51 8-30 (203)
371 1udx_A The GTP-binding protein 95.7 0.0027 9.4E-08 44.1 1.1 22 31-52 159-180 (416)
372 1r5b_A Eukaryotic peptide chai 95.7 0.0037 1.3E-07 43.7 1.7 25 27-51 41-65 (467)
373 3b9p_A CG5977-PA, isoform A; A 95.7 0.0048 1.6E-07 39.8 2.1 22 30-51 55-76 (297)
374 2ewv_A Twitching motility prot 95.7 0.005 1.7E-07 41.9 2.3 20 31-50 138-157 (372)
375 2obl_A ESCN; ATPase, hydrolase 95.7 0.0047 1.6E-07 41.9 2.2 21 31-51 73-93 (347)
376 2yvu_A Probable adenylyl-sulfa 95.7 0.0065 2.2E-07 36.7 2.6 22 29-50 13-34 (186)
377 1gtv_A TMK, thymidylate kinase 95.7 0.0017 5.7E-08 39.9 -0.1 20 31-50 2-21 (214)
378 2pez_A Bifunctional 3'-phospho 95.7 0.0067 2.3E-07 36.5 2.6 22 30-51 6-27 (179)
379 1fnn_A CDC6P, cell division co 95.7 0.0051 1.7E-07 40.6 2.2 22 31-52 46-67 (389)
380 2npi_A Protein CLP1; CLP1-PCF1 95.7 0.0041 1.4E-07 43.7 1.8 20 31-50 140-159 (460)
381 3nwj_A ATSK2; P loop, shikimat 95.7 0.0049 1.7E-07 40.0 2.1 21 30-50 49-69 (250)
382 1cip_A Protein (guanine nucleo 95.7 0.006 2.1E-07 41.4 2.6 24 26-49 29-52 (353)
383 1e6c_A Shikimate kinase; phosp 95.7 0.0057 2E-07 36.2 2.3 22 30-51 3-24 (173)
384 1qf9_A UMP/CMP kinase, protein 95.7 0.0057 2E-07 36.6 2.3 22 30-51 7-28 (194)
385 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.0049 1.7E-07 41.3 2.1 23 31-54 173-195 (330)
386 2pbr_A DTMP kinase, thymidylat 95.7 0.006 2.1E-07 36.6 2.4 21 31-51 2-22 (195)
387 2wwf_A Thymidilate kinase, put 95.7 0.0053 1.8E-07 37.5 2.1 22 30-51 11-32 (212)
388 2og2_A Putative signal recogni 95.7 0.0052 1.8E-07 42.0 2.2 21 30-50 158-178 (359)
389 2xex_A Elongation factor G; GT 95.7 0.0053 1.8E-07 44.9 2.4 25 27-51 8-32 (693)
390 2p5t_B PEZT; postsegregational 95.6 0.005 1.7E-07 39.4 2.0 23 29-51 32-54 (253)
391 3j16_B RLI1P; ribosome recycli 95.6 0.0078 2.7E-07 43.7 3.1 23 31-54 105-127 (608)
392 3bk7_A ABC transporter ATP-bin 95.6 0.008 2.7E-07 43.5 3.2 23 31-54 119-141 (607)
393 2bjv_A PSP operon transcriptio 95.6 0.01 3.5E-07 37.7 3.4 22 30-51 30-51 (265)
394 2yhs_A FTSY, cell division pro 95.6 0.0054 1.9E-07 43.8 2.2 21 30-50 294-314 (503)
395 1ofh_A ATP-dependent HSL prote 95.6 0.0059 2E-07 39.2 2.2 22 30-51 51-72 (310)
396 3ozx_A RNAse L inhibitor; ATP 95.6 0.0076 2.6E-07 43.0 3.0 23 31-54 27-49 (538)
397 3be4_A Adenylate kinase; malar 95.6 0.007 2.4E-07 37.7 2.5 23 29-51 5-27 (217)
398 1nn5_A Similar to deoxythymidy 95.6 0.0059 2E-07 37.3 2.1 22 30-51 10-31 (215)
399 2v1u_A Cell division control p 95.6 0.0049 1.7E-07 40.6 1.8 22 30-51 45-66 (387)
400 1sxj_E Activator 1 40 kDa subu 95.6 0.0059 2E-07 40.2 2.1 20 32-51 39-58 (354)
401 2iyv_A Shikimate kinase, SK; t 95.5 0.0061 2.1E-07 36.7 2.0 21 31-51 4-24 (184)
402 3syl_A Protein CBBX; photosynt 95.5 0.0057 1.9E-07 39.5 1.9 21 30-50 68-88 (309)
403 1d2n_A N-ethylmaleimide-sensit 95.5 0.0065 2.2E-07 38.9 2.2 23 29-51 64-86 (272)
404 2vli_A Antibiotic resistance p 95.5 0.0066 2.3E-07 36.3 2.1 21 30-50 6-26 (183)
405 1vht_A Dephospho-COA kinase; s 95.5 0.0083 2.8E-07 37.1 2.6 22 30-51 5-26 (218)
406 3szr_A Interferon-induced GTP- 95.5 0.0044 1.5E-07 44.7 1.4 22 31-53 47-68 (608)
407 1tf7_A KAIC; homohexamer, hexa 95.4 0.0058 2E-07 43.1 1.9 19 31-49 41-59 (525)
408 3ozx_A RNAse L inhibitor; ATP 95.4 0.01 3.5E-07 42.4 3.2 22 32-54 297-318 (538)
409 1p5z_B DCK, deoxycytidine kina 95.4 0.0094 3.2E-07 38.1 2.6 23 29-51 24-46 (263)
410 3r20_A Cytidylate kinase; stru 95.4 0.0089 3.1E-07 38.6 2.4 22 29-50 9-30 (233)
411 1uj2_A Uridine-cytidine kinase 95.4 0.0098 3.3E-07 37.9 2.6 24 28-51 21-44 (252)
412 1m7g_A Adenylylsulfate kinase; 95.4 0.0082 2.8E-07 37.2 2.2 21 30-50 26-46 (211)
413 2qmh_A HPR kinase/phosphorylas 95.3 0.011 3.6E-07 37.9 2.7 24 29-52 34-57 (205)
414 4fcw_A Chaperone protein CLPB; 95.3 0.0081 2.8E-07 38.8 2.2 22 30-51 48-69 (311)
415 3cf0_A Transitional endoplasmi 95.3 0.0078 2.7E-07 39.4 2.1 21 31-51 51-71 (301)
416 1yqt_A RNAse L inhibitor; ATP- 95.3 0.012 3.9E-07 42.0 3.1 23 31-54 314-336 (538)
417 3pfi_A Holliday junction ATP-d 95.3 0.0081 2.8E-07 39.4 2.2 21 31-51 57-77 (338)
418 1n0u_A EF-2, elongation factor 95.3 0.0077 2.6E-07 45.1 2.3 27 26-52 16-42 (842)
419 2f6r_A COA synthase, bifunctio 95.3 0.018 6.1E-07 37.6 3.8 23 28-50 74-96 (281)
420 2r8r_A Sensor protein; KDPD, P 95.3 0.01 3.5E-07 38.5 2.5 22 29-50 6-27 (228)
421 2qby_B CDC6 homolog 3, cell di 95.3 0.0074 2.5E-07 39.9 1.9 21 31-51 47-67 (384)
422 1ltq_A Polynucleotide kinase; 95.3 0.0088 3E-07 38.7 2.2 22 30-51 3-24 (301)
423 3uk6_A RUVB-like 2; hexameric 95.3 0.0074 2.5E-07 39.9 1.9 21 31-51 72-92 (368)
424 1p9r_A General secretion pathw 95.3 0.0083 2.8E-07 41.7 2.2 21 31-51 169-189 (418)
425 4eaq_A DTMP kinase, thymidylat 95.3 0.011 3.8E-07 37.5 2.6 23 29-51 26-48 (229)
426 1azs_C GS-alpha; complex (lyas 95.3 0.0097 3.3E-07 41.3 2.5 23 26-48 37-59 (402)
427 3bk7_A ABC transporter ATP-bin 95.2 0.013 4.3E-07 42.5 3.1 22 32-54 385-406 (607)
428 3a4m_A L-seryl-tRNA(SEC) kinas 95.2 0.0094 3.2E-07 38.3 2.2 22 30-51 5-26 (260)
429 2oap_1 GSPE-2, type II secreti 95.2 0.0085 2.9E-07 42.6 2.2 20 31-50 262-281 (511)
430 1sxj_C Activator 1 40 kDa subu 95.2 0.009 3.1E-07 39.5 2.1 20 32-51 49-68 (340)
431 3a8t_A Adenylate isopentenyltr 95.2 0.011 3.6E-07 40.4 2.5 21 31-51 42-62 (339)
432 1pzn_A RAD51, DNA repair and r 95.2 0.008 2.7E-07 40.5 1.9 21 31-51 133-153 (349)
433 1sxj_D Activator 1 41 kDa subu 95.2 0.0096 3.3E-07 38.9 2.2 20 32-51 61-80 (353)
434 1hqc_A RUVB; extended AAA-ATPa 95.2 0.0078 2.7E-07 39.1 1.7 22 30-51 39-60 (324)
435 3co5_A Putative two-component 95.1 0.007 2.4E-07 35.5 1.3 21 30-50 28-48 (143)
436 2p67_A LAO/AO transport system 95.1 0.011 3.8E-07 39.6 2.3 22 29-50 56-77 (341)
437 1um8_A ATP-dependent CLP prote 95.1 0.011 3.6E-07 39.7 2.2 22 30-51 73-94 (376)
438 3ux8_A Excinuclease ABC, A sub 95.1 0.0095 3.3E-07 43.2 2.1 16 32-47 351-366 (670)
439 3exa_A TRNA delta(2)-isopenten 95.1 0.012 4E-07 40.0 2.4 21 31-51 5-25 (322)
440 3zvl_A Bifunctional polynucleo 95.1 0.011 3.8E-07 40.6 2.3 22 30-51 259-280 (416)
441 1f5n_A Interferon-induced guan 95.0 0.018 6.3E-07 41.7 3.5 26 28-53 37-62 (592)
442 1g8p_A Magnesium-chelatase 38 95.0 0.0086 2.9E-07 39.2 1.6 21 31-51 47-67 (350)
443 3eie_A Vacuolar protein sortin 95.0 0.011 3.7E-07 39.0 2.1 22 30-51 52-73 (322)
444 3t15_A Ribulose bisphosphate c 95.0 0.01 3.5E-07 38.9 1.9 20 31-50 38-57 (293)
445 1xwi_A SKD1 protein; VPS4B, AA 95.0 0.011 3.8E-07 39.2 2.1 22 30-51 46-67 (322)
446 3cb4_D GTP-binding protein LEP 95.0 0.012 4E-07 42.7 2.4 24 28-51 3-26 (599)
447 3pxg_A Negative regulator of g 95.0 0.012 4E-07 41.0 2.3 22 30-51 202-223 (468)
448 3j16_B RLI1P; ribosome recycli 95.0 0.016 5.4E-07 42.1 2.9 22 32-54 381-402 (608)
449 2zts_A Putative uncharacterize 94.9 0.013 4.4E-07 36.4 2.2 21 31-51 32-52 (251)
450 2elf_A Protein translation elo 94.9 0.0097 3.3E-07 40.5 1.7 20 31-50 23-42 (370)
451 1q3t_A Cytidylate kinase; nucl 94.9 0.015 5.1E-07 36.6 2.5 25 26-50 13-37 (236)
452 1z6t_A APAF-1, apoptotic prote 94.9 0.013 4.4E-07 41.2 2.3 21 31-51 149-169 (591)
453 2rdo_7 EF-G, elongation factor 94.9 0.014 4.7E-07 42.9 2.5 25 27-51 8-32 (704)
454 1zuh_A Shikimate kinase; alpha 94.9 0.015 5E-07 34.5 2.3 23 29-51 7-29 (168)
455 2ywe_A GTP-binding protein LEP 94.9 0.016 5.5E-07 42.1 2.8 25 27-51 4-28 (600)
456 2r62_A Cell division protease 94.9 0.005 1.7E-07 39.2 0.1 20 32-51 47-66 (268)
457 3d8b_A Fidgetin-like protein 1 94.8 0.013 4.6E-07 39.2 2.2 22 30-51 118-139 (357)
458 2px0_A Flagellar biosynthesis 94.8 0.012 4E-07 39.0 1.9 21 30-50 106-126 (296)
459 2z4s_A Chromosomal replication 94.8 0.013 4.3E-07 40.6 2.1 20 31-50 132-151 (440)
460 2qgz_A Helicase loader, putati 94.8 0.014 4.6E-07 38.7 2.2 21 30-50 153-173 (308)
461 3crm_A TRNA delta(2)-isopenten 94.8 0.014 4.7E-07 39.5 2.2 21 31-51 7-27 (323)
462 1a7j_A Phosphoribulokinase; tr 94.8 0.013 4.6E-07 38.5 2.1 22 30-51 6-27 (290)
463 1vma_A Cell division protein F 94.8 0.014 4.9E-07 38.9 2.2 21 30-50 105-125 (306)
464 3foz_A TRNA delta(2)-isopenten 94.8 0.014 4.9E-07 39.4 2.2 21 31-51 12-32 (316)
465 2a5y_B CED-4; apoptosis; HET: 94.8 0.021 7.2E-07 40.3 3.2 22 30-51 153-174 (549)
466 2qp9_X Vacuolar protein sortin 94.8 0.014 4.8E-07 39.2 2.2 21 31-51 86-106 (355)
467 1f2t_A RAD50 ABC-ATPase; DNA d 94.7 0.014 4.8E-07 34.8 1.9 17 32-48 26-42 (149)
468 3ec1_A YQEH GTPase; atnos1, at 94.7 0.014 4.9E-07 39.6 2.2 24 29-52 162-185 (369)
469 3pvs_A Replication-associated 94.7 0.014 4.9E-07 40.6 2.2 21 31-51 52-72 (447)
470 3d3q_A TRNA delta(2)-isopenten 94.7 0.015 5.2E-07 39.6 2.2 22 30-51 8-29 (340)
471 1w5s_A Origin recognition comp 94.7 0.011 3.8E-07 39.4 1.5 21 31-51 52-74 (412)
472 1jr3_A DNA polymerase III subu 94.7 0.016 5.6E-07 38.1 2.3 21 31-51 40-60 (373)
473 1ojl_A Transcriptional regulat 94.7 0.023 7.9E-07 37.4 3.0 23 29-51 25-47 (304)
474 3tqf_A HPR(Ser) kinase; transf 94.7 0.017 5.8E-07 36.3 2.2 23 30-52 17-39 (181)
475 3ux8_A Excinuclease ABC, A sub 94.6 0.014 4.9E-07 42.2 2.1 15 32-46 47-61 (670)
476 3vfd_A Spastin; ATPase, microt 94.6 0.016 5.5E-07 39.1 2.2 22 30-51 149-170 (389)
477 3m6a_A ATP-dependent protease 94.6 0.015 5.3E-07 41.3 2.1 20 31-50 110-129 (543)
478 3hws_A ATP-dependent CLP prote 94.6 0.017 5.8E-07 38.6 2.2 21 30-50 52-72 (363)
479 2r44_A Uncharacterized protein 94.6 0.012 4.1E-07 38.6 1.4 21 31-51 48-68 (331)
480 4a9a_A Ribosome-interacting GT 94.6 0.013 4.4E-07 40.3 1.6 24 29-52 72-95 (376)
481 1svm_A Large T antigen; AAA+ f 94.6 0.017 5.8E-07 39.6 2.2 20 31-50 171-190 (377)
482 1tf7_A KAIC; homohexamer, hexa 94.5 0.015 5.2E-07 41.0 1.9 21 31-51 283-303 (525)
483 2iw3_A Elongation factor 3A; a 94.5 0.021 7.3E-07 43.7 2.8 23 32-54 464-486 (986)
484 1iqp_A RFCS; clamp loader, ext 94.5 0.019 6.6E-07 36.9 2.3 21 31-51 48-68 (327)
485 3ake_A Cytidylate kinase; CMP 94.5 0.023 7.7E-07 34.5 2.4 20 31-50 4-23 (208)
486 3cr8_A Sulfate adenylyltranfer 94.4 0.013 4.4E-07 42.1 1.4 22 29-50 369-390 (552)
487 3qf7_A RAD50; ABC-ATPase, ATPa 94.4 0.017 5.9E-07 39.1 1.9 17 32-48 26-42 (365)
488 1sxj_B Activator 1 37 kDa subu 94.4 0.021 7.2E-07 36.7 2.2 20 32-51 45-64 (323)
489 3h2y_A GTPase family protein; 94.3 0.016 5.4E-07 39.4 1.6 24 29-52 160-183 (368)
490 2iw3_A Elongation factor 3A; a 94.3 0.017 5.9E-07 44.2 1.9 23 31-54 701-723 (986)
491 2chq_A Replication factor C sm 94.3 0.021 7.3E-07 36.6 2.1 20 32-51 41-60 (319)
492 1sxj_A Activator 1 95 kDa subu 94.3 0.021 7.1E-07 40.2 2.2 21 31-51 79-99 (516)
493 3hr8_A Protein RECA; alpha and 94.2 0.019 6.7E-07 39.1 1.9 21 31-51 63-83 (356)
494 1ko7_A HPR kinase/phosphatase; 94.2 0.02 6.8E-07 38.6 1.9 23 30-52 145-167 (314)
495 3k1j_A LON protease, ATP-depen 94.2 0.023 7.9E-07 40.7 2.2 21 31-51 62-82 (604)
496 3bh0_A DNAB-like replicative h 94.2 0.024 8.3E-07 37.5 2.2 21 31-51 70-90 (315)
497 1e69_A Chromosome segregation 94.1 0.022 7.6E-07 37.7 2.0 19 31-49 26-44 (322)
498 2zan_A Vacuolar protein sortin 94.1 0.024 8.3E-07 39.2 2.2 22 30-51 168-189 (444)
499 3eph_A TRNA isopentenyltransfe 94.1 0.021 7.3E-07 39.8 1.9 21 31-51 4-24 (409)
500 3avx_A Elongation factor TS, e 94.1 0.027 9.2E-07 44.2 2.6 25 27-51 294-318 (1289)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.32 E-value=5.1e-13 Score=85.61 Aligned_cols=45 Identities=38% Similarity=0.528 Sum_probs=29.2
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCC
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPG 70 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~ 70 (76)
+...|||+|||+++||||||+.||+.+.|.+.|.+|+|.++..+.
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~ 54 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKT 54 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEE
Confidence 345799999999999999999999999999999999998875543
No 2
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.12 E-value=2.2e-11 Score=75.93 Aligned_cols=48 Identities=42% Similarity=0.567 Sum_probs=29.8
Q ss_pred CccccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 21 DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 21 ~~~~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
.+....+..+||+++|+.+||||||+++|+.+.|...+.+|++.++..
T Consensus 21 ~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~ 68 (201)
T 2hup_A 21 DPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTM 68 (201)
T ss_dssp -----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEE
T ss_pred CcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEE
Confidence 334566778999999999999999999999999998889998876643
No 3
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.08 E-value=9.5e-11 Score=71.91 Aligned_cols=45 Identities=38% Similarity=0.550 Sum_probs=39.8
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
..++..+||+++|+.+||||||+++++.+.|...+.+|++.++..
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~ 64 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFST 64 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEE
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEE
Confidence 456778999999999999999999999999998888998877654
No 4
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.07 E-value=8.2e-11 Score=72.31 Aligned_cols=44 Identities=30% Similarity=0.507 Sum_probs=33.5
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
......+||+++|+.+||||||+++++.+.|...+.+|++.++.
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 59 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG 59 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEE
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeE
Confidence 34566899999999999999999999999998888888775554
No 5
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.06 E-value=1.2e-10 Score=71.30 Aligned_cols=45 Identities=33% Similarity=0.492 Sum_probs=39.0
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
...++.+||+++|+.+||||||+++++.+.|...+.+|++.++..
T Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~ 61 (189)
T 2gf9_A 17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKV 61 (189)
T ss_dssp TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEE
T ss_pred cccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEE
Confidence 345678999999999999999999999999988888888876643
No 6
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.04 E-value=2.6e-10 Score=70.16 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=36.8
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
......+||+++|+.+||||||+++|+.+.|...|.+|++.++.
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~ 59 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS 59 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee
Confidence 34456899999999999999999999999999999999987753
No 7
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.03 E-value=1.8e-10 Score=71.31 Aligned_cols=44 Identities=41% Similarity=0.541 Sum_probs=38.0
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
...+..+|++++|++|||||||+++++...|...+.+|++.++.
T Consensus 24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~ 67 (191)
T 1oix_A 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFA 67 (191)
T ss_dssp CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEE
Confidence 34567899999999999999999999999999888898876543
No 8
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.02 E-value=1.1e-10 Score=71.95 Aligned_cols=47 Identities=28% Similarity=0.431 Sum_probs=32.1
Q ss_pred cccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP 69 (76)
Q Consensus 23 ~~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~ 69 (76)
+...+..+||+++|+.++|||||+++++.+.|...+.+|++.++...
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~ 66 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIK 66 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEE
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEE
Confidence 34567789999999999999999999999999888888888776543
No 9
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.00 E-value=2.4e-10 Score=71.59 Aligned_cols=45 Identities=38% Similarity=0.507 Sum_probs=39.5
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
..++..+||+++|+++||||||+++|+.+.|...+.+|++.++..
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~ 65 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMI 65 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEE
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEE
Confidence 356778999999999999999999999999998899999877654
No 10
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.00 E-value=4.3e-10 Score=70.52 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=37.2
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
......+||+++|+.+||||||+++|+.+.|...|.+|++.++.
T Consensus 23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~ 66 (205)
T 1gwn_A 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT 66 (205)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE
Confidence 34567899999999999999999999999999999999987764
No 11
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.99 E-value=5.6e-10 Score=68.72 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=34.2
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCce
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~ti 62 (76)
.....+||+++|+++||||||+++|+.+.|...+.+|.
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~ 53 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG 53 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc
Confidence 44568999999999999999999999999999888884
No 12
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.98 E-value=4.3e-11 Score=73.60 Aligned_cols=46 Identities=30% Similarity=0.423 Sum_probs=39.4
Q ss_pred cccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 23 ~~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
...+++.+||+++|+.+||||||+++|+.+.|...+.+|++.++..
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~ 62 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKV 62 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEE
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEE
Confidence 3567889999999999999999999999999988888888755543
No 13
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.94 E-value=8.9e-10 Score=67.58 Aligned_cols=41 Identities=29% Similarity=0.321 Sum_probs=36.9
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
...+||+++|+.+||||||+++++.+.|...+.+|++.++.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 60 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR 60 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE
Confidence 45799999999999999999999999999888999987764
No 14
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.93 E-value=1.3e-09 Score=66.93 Aligned_cols=45 Identities=27% Similarity=0.351 Sum_probs=38.1
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
......+||+++|+.+||||||+++|+.+.|...+.+|++.++..
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~ 62 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH 62 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE
Confidence 345568999999999999999999999999999999999887653
No 15
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.92 E-value=4.8e-10 Score=69.95 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=39.4
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
..++..+||+++|+.+||||||+++|+.+.|...+.+|++.++..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~ 64 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFRE 64 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEE
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEE
Confidence 456778999999999999999999999999988888999877654
No 16
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.92 E-value=6.7e-10 Score=68.79 Aligned_cols=39 Identities=46% Similarity=0.667 Sum_probs=31.9
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~ 65 (76)
++.+|++++|++|||||||+++++...|...+.+|++.+
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~ 41 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 41 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccee
Confidence 467999999999999999999999999988888887643
No 17
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.92 E-value=1.4e-09 Score=68.34 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=36.9
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
......+||+++|+.+||||||+++|+.+.|...|.+|++.++.
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~ 65 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT 65 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE
Confidence 34456899999999999999999999999999999999988875
No 18
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.91 E-value=1e-09 Score=67.01 Aligned_cols=45 Identities=40% Similarity=0.523 Sum_probs=39.2
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP 69 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~ 69 (76)
.....+||+++|+.++|||||+++++.+.|...+.++++.++...
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~ 56 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR 56 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEE
Confidence 446789999999999999999999999999998989888776543
No 19
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.91 E-value=1e-09 Score=66.74 Aligned_cols=46 Identities=50% Similarity=0.647 Sum_probs=39.8
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCc
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGR 71 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~ 71 (76)
....+||+++|+.++|||||+++++.+.|...+.+|++.++.....
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~ 49 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVV 49 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEE
Confidence 3467999999999999999999999999999999999887765433
No 20
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.91 E-value=9.9e-10 Score=67.25 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=33.0
Q ss_pred cccccceeeEEEECCCCCcchhhhhhhhhCcCCC-cCCCceeEEE
Q psy1355 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHE-YQESTIGGCG 66 (76)
Q Consensus 23 ~~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~-~~~~tig~~~ 66 (76)
+......+||+|+|+.+||||||+++|+.+.|.. .|.+|++..+
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~ 55 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV 55 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE
Confidence 3456678999999999999999999999999998 8899988554
No 21
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.91 E-value=6.9e-10 Score=67.91 Aligned_cols=43 Identities=35% Similarity=0.590 Sum_probs=36.5
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
....+||+++|+.+||||||+++|+.+.|...+.+|++.++..
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~ 59 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRE 59 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEE
Confidence 3457999999999999999999999999998888888766543
No 22
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.91 E-value=1.2e-09 Score=66.21 Aligned_cols=45 Identities=24% Similarity=0.411 Sum_probs=39.3
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP 69 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~ 69 (76)
..+..+||+++|+.+||||||+++++.+.|...+.+|++.++...
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~ 50 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSK 50 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEE
Confidence 356789999999999999999999999999988899988776543
No 23
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.91 E-value=1.4e-09 Score=65.91 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=38.8
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
.++..+||+++|+.+||||||+++++.+.|...+.+|++.++.
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 49 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR 49 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee
Confidence 4567899999999999999999999999999888999988765
No 24
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.91 E-value=1.1e-09 Score=65.27 Aligned_cols=42 Identities=40% Similarity=0.696 Sum_probs=36.8
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
.+..+||+++|+.++|||||+++++.+.|...+.+|++.++.
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 44 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFL 44 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEE
Confidence 456899999999999999999999999998888888886654
No 25
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.91 E-value=1.5e-10 Score=71.65 Aligned_cols=43 Identities=42% Similarity=0.530 Sum_probs=36.4
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
..+..+||+++|+.+||||||+++++.+.|...+.++++.++.
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~ 71 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFK 71 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEE
Confidence 3467899999999999999999999999988887777765544
No 26
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.89 E-value=1.5e-09 Score=67.14 Aligned_cols=42 Identities=36% Similarity=0.502 Sum_probs=36.3
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
.....+||+++|+.+||||||+++|+.+.|...|.+|++..+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 61 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY 61 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE
Confidence 345689999999999999999999999999999999988765
No 27
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.89 E-value=1.4e-09 Score=66.88 Aligned_cols=46 Identities=39% Similarity=0.569 Sum_probs=38.5
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP 69 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~ 69 (76)
..++..+||+++|+.++|||||+++++.+.|...+.+|++.++...
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~ 63 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTK 63 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEE
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEE
Confidence 4567789999999999999999999999999888899998776543
No 28
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.88 E-value=1.2e-09 Score=65.49 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=37.5
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
...+..+||+++|+.++|||||+++++.+.|...+.+|++.++.
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 53 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFG 53 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEE
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE
Confidence 34567899999999999999999999999998888888876543
No 29
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.87 E-value=1e-09 Score=65.21 Aligned_cols=41 Identities=37% Similarity=0.504 Sum_probs=35.7
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
...+||+++|+.++|||||+++++.+.|...+.+|++.++.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~ 43 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL 43 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEE
Confidence 45799999999999999999999999999888888876553
No 30
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.87 E-value=2e-09 Score=66.34 Aligned_cols=45 Identities=29% Similarity=0.425 Sum_probs=39.0
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP 69 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~ 69 (76)
.+++.+||+++|+.+||||||+++++.+.|...+.+|++.++...
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~ 48 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK 48 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEE
Confidence 345689999999999999999999999999988889988776543
No 31
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.86 E-value=1.7e-09 Score=64.98 Aligned_cols=45 Identities=38% Similarity=0.501 Sum_probs=35.9
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP 69 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~ 69 (76)
..+..+||+++|+.++|||||+++++.+.+...+.++++.++...
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~ 49 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR 49 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEE
Confidence 456789999999999999999999999999888889888776543
No 32
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.86 E-value=4.4e-10 Score=68.14 Aligned_cols=43 Identities=35% Similarity=0.495 Sum_probs=22.6
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
.++.+||+++|+.+||||||+++|+.+.|...+.+|++.++..
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~ 47 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKI 47 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEE
Confidence 4578999999999999999999999999988888888877653
No 33
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.86 E-value=2.5e-09 Score=66.64 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=34.0
Q ss_pred CCCCccccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 18 RPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 18 ~~~~~~~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
..+.........+||+++|+.+||||||+.+|+.+.|...+.+|++..+
T Consensus 19 ~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~ 67 (204)
T 4gzl_A 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY 67 (204)
T ss_dssp -----------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE
T ss_pred hHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee
Confidence 3333334456689999999999999999999999999988988886654
No 34
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.86 E-value=2.1e-09 Score=63.86 Aligned_cols=42 Identities=81% Similarity=1.180 Sum_probs=37.2
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
...+||+++|+.++|||||+++++.+.|...+.++++.++..
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~ 45 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT 45 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE
Confidence 457999999999999999999999999998888888877644
No 35
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.86 E-value=2.3e-09 Score=63.78 Aligned_cols=43 Identities=37% Similarity=0.578 Sum_probs=37.7
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
....+||+++|+.++|||||+++++.+.|...+.+|++.++..
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~ 45 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT 45 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE
Confidence 3457999999999999999999999999988889998877654
No 36
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.85 E-value=3.3e-09 Score=64.69 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=36.7
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
....+||+++|+.+||||||+++|+.+.|...|.+|++.++.
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~ 45 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT 45 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE
Confidence 356799999999999999999999999999999999987764
No 37
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.85 E-value=1.6e-09 Score=65.30 Aligned_cols=44 Identities=59% Similarity=0.752 Sum_probs=36.3
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
......+||+++|+.++|||||+++++.+.+...+.+|++.++.
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~ 50 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFF 50 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEE
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEE
Confidence 34556899999999999999999999999999888888876554
No 38
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.85 E-value=1.4e-09 Score=64.70 Aligned_cols=41 Identities=39% Similarity=0.577 Sum_probs=30.1
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
..+||+++|+.++|||||+++++.+.|...+.+|++.++..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~ 42 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI 42 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEE
Confidence 46899999999999999999999999988888888766543
No 39
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.85 E-value=2.1e-09 Score=64.61 Aligned_cols=42 Identities=40% Similarity=0.516 Sum_probs=33.7
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
....+||+++|+.++|||||+++++.+.|...+.+|++.++.
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~ 45 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFL 45 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE
Confidence 445799999999999999999999999999888899887764
No 40
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.84 E-value=1.5e-09 Score=67.23 Aligned_cols=42 Identities=40% Similarity=0.491 Sum_probs=37.5
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
++..+||+++|+.++|||||+++++.+.|...+.+|++.++.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 46 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFK 46 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE
Confidence 466899999999999999999999999999888898876654
No 41
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.84 E-value=8.8e-10 Score=68.40 Aligned_cols=45 Identities=24% Similarity=0.385 Sum_probs=27.2
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
..++..+||+++|+.+||||||+++++.+.|...+.+|++.++..
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~ 64 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGS 64 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEE
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEE
Confidence 446778999999999999999999999999988888888766543
No 42
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.83 E-value=2.3e-09 Score=66.04 Aligned_cols=43 Identities=30% Similarity=0.264 Sum_probs=27.6
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
......+||+++|+.+||||||+++|+.+.|...|.+|++..+
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~ 57 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF 57 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee
Confidence 3456689999999999999999999999999988989887654
No 43
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.83 E-value=3e-09 Score=63.14 Aligned_cols=41 Identities=59% Similarity=0.773 Sum_probs=36.1
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
..+||+++|+.++|||||+++++.+.|...+.+|++.++..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~ 42 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLT 42 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE
Confidence 36899999999999999999999999998888988876543
No 44
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.82 E-value=2e-09 Score=65.95 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=26.8
Q ss_pred eeeEEEECCCCCcchhhhhhhhhC--cCCCcCCCceeEEEEe
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRG--QFHEYQESTIGGCGNV 68 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~--~f~~~~~~tig~~~~~ 68 (76)
.+|++++|++|||||||+++|+.. .|...+.+|+|.++..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~ 43 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKD 43 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEE
Confidence 589999999999999999999974 5777788999888653
No 45
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.82 E-value=3.8e-09 Score=65.45 Aligned_cols=41 Identities=32% Similarity=0.431 Sum_probs=36.0
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
....+||+++|+.+||||||+++|+.+.|...|.+|++.++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 62 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY 62 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceE
Confidence 34689999999999999999999999999988888876554
No 46
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.82 E-value=1.5e-09 Score=67.11 Aligned_cols=43 Identities=37% Similarity=0.581 Sum_probs=27.1
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
.....+||+++|+.+||||||+++++.+.|...+.+|++.++.
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 66 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQ 66 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeE
Confidence 4456799999999999999999999999998888888876654
No 47
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.82 E-value=4.1e-09 Score=64.91 Aligned_cols=44 Identities=34% Similarity=0.492 Sum_probs=37.5
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP 69 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~ 69 (76)
....+||+++|+.++|||||+++++.+.|...+.+|++.++...
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~ 48 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEE
Confidence 45689999999999999999999999999998999988776543
No 48
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.82 E-value=3.2e-09 Score=63.63 Aligned_cols=42 Identities=40% Similarity=0.584 Sum_probs=37.1
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
...+||+++|+.++|||||+++++.+.|...+.+|++.++..
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~ 53 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS 53 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEE
Confidence 346999999999999999999999999998889998877643
No 49
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.82 E-value=3.5e-09 Score=64.85 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=36.8
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
.....+||+++|+.+||||||+++|+.+.|...|.+|++..+
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~ 55 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY 55 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee
Confidence 345689999999999999999999999999998999886554
No 50
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.81 E-value=4.5e-10 Score=67.60 Aligned_cols=41 Identities=37% Similarity=0.433 Sum_probs=35.1
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
...+||+++|+.+||||||+++++.+.|...+.+|++.++.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~ 44 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFF 44 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEE
Confidence 35799999999999999999999999988878888875543
No 51
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.81 E-value=3.9e-09 Score=64.27 Aligned_cols=44 Identities=41% Similarity=0.565 Sum_probs=38.2
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP 69 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~ 69 (76)
....+||+++|+.+||||||+++++.+.|...+.+|++.++...
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~ 55 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK 55 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEE
Confidence 34579999999999999999999999999988999988776543
No 52
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.81 E-value=5.7e-09 Score=62.89 Aligned_cols=41 Identities=32% Similarity=0.487 Sum_probs=35.4
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
....+||+++|+.++|||||+++++.+.|...|.+|++..+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 55 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 55 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE
Confidence 34579999999999999999999999999988888887665
No 53
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.81 E-value=2.1e-09 Score=67.68 Aligned_cols=44 Identities=39% Similarity=0.522 Sum_probs=32.5
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
.++..+||+|+|+.+||||||+++|+.+.|...+.+|++.++..
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~ 52 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFAT 52 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEE
Confidence 34678999999999999999999999999998888888766543
No 54
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.80 E-value=7.3e-09 Score=61.41 Aligned_cols=39 Identities=46% Similarity=0.719 Sum_probs=35.6
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
.+||+++|+.++|||||+++++.+.|...+.+|++..+.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 41 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR 41 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE
Confidence 589999999999999999999999999999999887664
No 55
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.80 E-value=5.5e-09 Score=63.25 Aligned_cols=42 Identities=33% Similarity=0.566 Sum_probs=37.4
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
.....+||+++|+.++|||||+++|+.+.|...+.+|++..+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~ 55 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY 55 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee
Confidence 345689999999999999999999999999999999987665
No 56
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.79 E-value=6.8e-09 Score=62.28 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=36.5
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
...+||+++|+.++|||||+++++.+.|...+.+|++.++.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 47 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT 47 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE
Confidence 35799999999999999999999999999999999877653
No 57
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.78 E-value=3.5e-09 Score=63.87 Aligned_cols=38 Identities=34% Similarity=0.489 Sum_probs=33.4
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
..+||+++|+.+||||||+++|+.+.|.. +.+|++..+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~ 43 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY 43 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE
Confidence 47999999999999999999999999987 778876554
No 58
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.78 E-value=2.7e-09 Score=64.13 Aligned_cols=43 Identities=35% Similarity=0.525 Sum_probs=33.4
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
....+||+++|+.++|||||+++++.+.|...+.+|++.++..
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~ 47 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLT 47 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEE
Confidence 3457999999999999999999999999998888888765443
No 59
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.76 E-value=6.2e-09 Score=62.64 Aligned_cols=43 Identities=35% Similarity=0.454 Sum_probs=36.4
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCC-CcCCCceeEEEE
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFH-EYQESTIGGCGN 67 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~-~~~~~tig~~~~ 67 (76)
.+...+||+++|+.++|||||+++++.+.|. ..+.+|++.++.
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~ 49 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFR 49 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEE
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEE
Confidence 4466899999999999999999999999885 467788877654
No 60
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.75 E-value=1e-08 Score=63.01 Aligned_cols=42 Identities=33% Similarity=0.497 Sum_probs=36.4
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
....+||+++|+.+||||||+++++.+.|...|.+|++.++.
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~ 66 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR 66 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE
Confidence 345799999999999999999999999999999999877653
No 61
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.75 E-value=4.9e-09 Score=64.81 Aligned_cols=44 Identities=36% Similarity=0.502 Sum_probs=35.5
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
.....+||+++|+.+||||||+.+++.+.|...+.+|++.++..
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~ 59 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI 59 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE
Confidence 34567999999999999999999999999988888888766543
No 62
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.75 E-value=8.6e-09 Score=62.27 Aligned_cols=39 Identities=41% Similarity=0.572 Sum_probs=35.6
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
..+||+++|+.++|||||+++|+.+.|...+.+|++..+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 43 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF 43 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE
Confidence 478999999999999999999999999999999987665
No 63
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.74 E-value=7.9e-09 Score=64.15 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=36.2
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
...+||+++|+.++|||||+.+|+.+.|...|.+|++..+.
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~ 47 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS 47 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE
Confidence 35799999999999999999999999999889999876553
No 64
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.73 E-value=6.8e-09 Score=63.48 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=32.7
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCc-CCCcCCCceeEE
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQ-FHEYQESTIGGC 65 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~-f~~~~~~tig~~ 65 (76)
.....+||+++|+.+||||||+++++.+. |...+.+|++..
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~ 58 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS 58 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee
Confidence 44557999999999999999999999887 677788888644
No 65
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.73 E-value=1.4e-08 Score=60.26 Aligned_cols=39 Identities=44% Similarity=0.718 Sum_probs=34.6
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
.+||+++|+.++|||||+++++.+.|...+.+|++..+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 41 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR 41 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE
Confidence 689999999999999999999999998888888876653
No 66
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.73 E-value=2e-09 Score=66.19 Aligned_cols=42 Identities=31% Similarity=0.365 Sum_probs=8.1
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhC--cCCCcCCCceeEEEEe
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRG--QFHEYQESTIGGCGNV 68 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~--~f~~~~~~tig~~~~~ 68 (76)
...+||+++|+.+||||||+++++.+ .|...+.+|++.++..
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~ 61 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVV 61 (208)
T ss_dssp EEEEEEEEC----------------------------------C
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEE
Confidence 45799999999999999999999998 8888889998866543
No 67
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.73 E-value=4e-09 Score=67.02 Aligned_cols=40 Identities=33% Similarity=0.471 Sum_probs=27.7
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhh--CcCCCcCCCceeEE
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVR--GQFHEYQESTIGGC 65 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~--~~f~~~~~~tig~~ 65 (76)
.....+||+++|+++||||||++||+. ..|...+. +++.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~-~~g~d 74 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGED 74 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTT
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC-cccee
Confidence 455679999999999999999999985 34455443 34433
No 68
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.72 E-value=4.7e-09 Score=63.25 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=27.5
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
...+||+++|+.++|||||+++|+.+.|...|.+|++..+.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~ 46 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS 46 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE
Confidence 34799999999999999999999999999989999876653
No 69
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.72 E-value=1.7e-08 Score=59.57 Aligned_cols=38 Identities=45% Similarity=0.708 Sum_probs=33.9
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
.+||+++|+.++|||||+++++.+.|...+.+|++..+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~ 40 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY 40 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE
Confidence 58999999999999999999999999988888876543
No 70
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.72 E-value=1e-08 Score=62.26 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=36.7
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcC-----------CCceeEEEEeCC
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQ-----------ESTIGGCGNVPG 70 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~-----------~~tig~~~~~~~ 70 (76)
......+||+++|+.+||||||+ +++.+.|...| .+|++.++....
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 65 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLD 65 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSS
T ss_pred hccccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccc
Confidence 34567899999999999999999 78888888764 458888876543
No 71
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.72 E-value=1.7e-08 Score=59.64 Aligned_cols=39 Identities=33% Similarity=0.485 Sum_probs=35.0
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
.+||+++|+.++|||||+++++.+.|...+.+|++..+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~ 42 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR 42 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE
Confidence 689999999999999999999999999888888876653
No 72
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.70 E-value=2.9e-09 Score=66.71 Aligned_cols=45 Identities=31% Similarity=0.499 Sum_probs=37.9
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
......+||+++|+.+||||||+++|+.+.|...+.+|++.++..
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~ 54 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP 54 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEE
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEE
Confidence 345568999999999999999999999999888888888766543
No 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.70 E-value=2e-08 Score=61.18 Aligned_cols=40 Identities=33% Similarity=0.621 Sum_probs=34.9
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
...+||+++|+.+||||||+++++.+.|...+.+|++..+
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 58 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY 58 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE
Confidence 3469999999999999999999999999888888876554
No 74
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.70 E-value=1.5e-08 Score=61.04 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=34.6
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
..+||+++|+.++|||||+++|+.+.|...+.+|++..+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~ 42 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY 42 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee
Confidence 468999999999999999999999999988888886544
No 75
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.70 E-value=1.2e-08 Score=63.94 Aligned_cols=40 Identities=33% Similarity=0.478 Sum_probs=29.3
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
...+||+++|+.+||||||+++|+.+.|...|.+|++..+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~ 71 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY 71 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE
Confidence 3479999999999999999999999999988888886665
No 76
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.70 E-value=2.1e-08 Score=61.52 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=35.7
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
...+||+++|+.++|||||+++++.+.|...|.+|++..+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 51 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 51 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE
Confidence 4579999999999999999999999999988988887665
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.67 E-value=1.7e-08 Score=62.71 Aligned_cols=40 Identities=30% Similarity=0.456 Sum_probs=29.6
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
...+||+++|+.+||||||+++++.+.|...|.+|++.++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 62 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY 62 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceE
Confidence 4578999999999999999999999999988888887665
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.66 E-value=2.4e-08 Score=61.00 Aligned_cols=41 Identities=44% Similarity=0.681 Sum_probs=35.8
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
...+||+++|+.++|||||+++++.+.|...+.+|++..+.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 46 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR 46 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee
Confidence 34699999999999999999999999998888888876653
No 79
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.66 E-value=4.6e-09 Score=65.18 Aligned_cols=38 Identities=37% Similarity=0.340 Sum_probs=26.8
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCce
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~ti 62 (76)
.....+||+++|+++||||||+++|+...+...+.+++
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~ 56 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPEN 56 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCc
Confidence 45568999999999999999999997544433333433
No 80
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.64 E-value=3.6e-08 Score=57.96 Aligned_cols=38 Identities=34% Similarity=0.630 Sum_probs=33.5
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
.+||+++|+.++|||||+++++.+.+...+.+|++..+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~ 40 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY 40 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE
Confidence 58999999999999999999999999888888876553
No 81
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.64 E-value=4.3e-08 Score=59.20 Aligned_cols=39 Identities=33% Similarity=0.617 Sum_probs=34.3
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
..+||+++|+.++|||||+++++.+.|...+.+|++..+
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 41 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY 41 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE
Confidence 478999999999999999999999999988888875443
No 82
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.63 E-value=6.9e-09 Score=63.13 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=29.8
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCcee
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig 63 (76)
......+||+++|+.+||||||+++|+.+.| ..+.+|++
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~ 54 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIG 54 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSS
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCc
Confidence 3455689999999999999999999999888 55666665
No 83
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.62 E-value=9.4e-09 Score=66.58 Aligned_cols=46 Identities=30% Similarity=0.348 Sum_probs=37.1
Q ss_pred ccccceeeEEEECCC---------CCcchhhhhhhhh---CcCCCcCCCce-eEEEEeC
Q psy1355 24 QAKICQYKLVLLGES---------AVGKSSLVLRFVR---GQFHEYQESTI-GGCGNVP 69 (76)
Q Consensus 24 ~~~~~~~kivllG~~---------~vGKtsl~~~~~~---~~f~~~~~~ti-g~~~~~~ 69 (76)
......+||+++|++ +||||||+++|+. +.|...+.+|+ +.++..+
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~ 72 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGR 72 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTST
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCccccccccee
Confidence 345668999999999 9999999999998 67777788876 5665433
No 84
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.60 E-value=2.2e-08 Score=62.38 Aligned_cols=42 Identities=29% Similarity=0.635 Sum_probs=34.7
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
.....+||+++|+.+||||||+++++.+.|...+.+|++..+
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 48 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVN 48 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEE
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceee
Confidence 345689999999999999999999999998888888876554
No 85
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.60 E-value=8.8e-09 Score=63.55 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=22.4
Q ss_pred CCCccccccceeeEEEECCCCCcchhhhhhhhhCcCCC
Q psy1355 19 PNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHE 56 (76)
Q Consensus 19 ~~~~~~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~ 56 (76)
+...+......+||+++|+.+||||||++++. +.|..
T Consensus 10 ~~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~-~~~~~ 46 (196)
T 3llu_A 10 GRENLYFQGSKPRILLMGLRRSGKSSIQKVVF-HKMSP 46 (196)
T ss_dssp ----------CCEEEEEESTTSSHHHHHHHHH-SCCCG
T ss_pred CCCCCcccCcceEEEEECCCCCCHHHHHHHHH-hcCCC
Confidence 33334566779999999999999999997554 45543
No 86
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.60 E-value=1.3e-08 Score=62.93 Aligned_cols=32 Identities=38% Similarity=0.586 Sum_probs=24.0
Q ss_pred ceeeEEEECCCCCcchhhhhhhhh--CcCCCcCC
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVR--GQFHEYQE 59 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~--~~f~~~~~ 59 (76)
..+||+++|+++||||||+++|+. ..|...+.
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~ 38 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE 38 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----G
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc
Confidence 469999999999999999999985 34555443
No 87
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.55 E-value=3.1e-08 Score=58.94 Aligned_cols=36 Identities=36% Similarity=0.370 Sum_probs=22.5
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~ 64 (76)
.+||+++|+++||||||+++|+...+...+.++.+.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~ 37 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSE 37 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcC
Confidence 589999999999999999999877766555444433
No 88
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.55 E-value=2.7e-08 Score=59.40 Aligned_cols=31 Identities=39% Similarity=0.622 Sum_probs=24.0
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcCCCcC
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 58 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~ 58 (76)
..+||+++|+++||||||+++|+.+.+...+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~ 33 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH 33 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc
Confidence 4789999999999999999999988876544
No 89
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.54 E-value=8.5e-08 Score=59.51 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=30.2
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCce
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~ti 62 (76)
...+||+++|+++||||||+++|+.+.|...|.++.
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~ 40 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT 40 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc
Confidence 457899999999999999999999999998887654
No 90
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.53 E-value=2.3e-08 Score=59.98 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=31.4
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCcee
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig 63 (76)
...+||+++|+.+||||||+++++.+.|...+.++++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~ 42 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGIT 42 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCcee
Confidence 3478999999999999999999999888877666553
No 91
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.53 E-value=9.5e-08 Score=57.93 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=32.4
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~ 65 (76)
...+||+++|+.+||||||+++++.+. ...+.+|++..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~ 53 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN 53 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc
Confidence 457999999999999999999999888 66788888744
No 92
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.52 E-value=1e-07 Score=56.64 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=31.5
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEE
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~ 65 (76)
..+||+++|+.++|||||+++++.+.|.. +.+|++..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~ 42 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN 42 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc
Confidence 46899999999999999999999988864 67787654
No 93
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.92 E-value=1.1e-08 Score=63.26 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=36.1
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
.....+||+++|+.+||||||+.+|+.+.|...+.+|++..+
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 67 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY 67 (204)
Confidence 345679999999999999999999999999888888876554
No 94
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.51 E-value=4.6e-08 Score=57.94 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=29.5
Q ss_pred eeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~ 64 (76)
+||+++|+++||||||+++++.+.|.. +.+|++.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~ 34 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF 34 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce
Confidence 689999999999999999999888875 5777763
No 95
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.45 E-value=5.6e-08 Score=58.42 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=25.3
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCc
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 61 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~t 61 (76)
.+|++++|++|||||||+++++...+...+.++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~ 35 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPG 35 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC----
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCC
Confidence 489999999999999999999987765444343
No 96
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.45 E-value=6.9e-08 Score=58.53 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=27.7
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCce
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~ti 62 (76)
..+|++++|++|||||||+++++...+...+.+++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~ 40 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGV 40 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCe
Confidence 46899999999999999999999866554444443
No 97
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.44 E-value=1.1e-07 Score=57.50 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=29.5
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCce
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~ti 62 (76)
.+||+++|+.+||||||+++++.+.|...+.+++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~ 34 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGV 34 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCc
Confidence 3799999999999999999999998887776654
No 98
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.43 E-value=7.3e-08 Score=58.69 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=31.2
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCcee
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig 63 (76)
...+||+++|+.+||||||+++++.+.|. .+.+|++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~ 49 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG 49 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc
Confidence 34799999999999999999999988887 5677765
No 99
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.42 E-value=2.9e-07 Score=60.27 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=36.0
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
...+||+++|+.++|||||+.+|+.+.|...+.+|++..+.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~ 193 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS 193 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeE
Confidence 34689999999999999999999999999889998876653
No 100
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.40 E-value=8.7e-08 Score=58.44 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=30.4
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~ 64 (76)
...+||+++|+++||||||+++++.+.+ ..+.+|+|.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~ 50 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF 50 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe
Confidence 4579999999999999999999997755 346677764
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.40 E-value=4.5e-08 Score=59.04 Aligned_cols=36 Identities=25% Similarity=0.506 Sum_probs=30.7
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCcee
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig 63 (76)
...+||+++|+.+||||||+++++.+.+ ..+.+|++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~ 51 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG 51 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc
Confidence 4579999999999999999999998887 55667765
No 102
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.39 E-value=2e-07 Score=57.30 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=29.2
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~ 64 (76)
...+||+++|+++||||||+++++.+.|. .|.+|++.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~ 57 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP 57 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC
Confidence 34679999999999999999999998876 46677654
No 103
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.38 E-value=8.9e-08 Score=59.95 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=34.2
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
..+|++++|++|||||||+.+|+...|...+.++++.++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 4689999999999999999999988887767778877653
No 104
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.38 E-value=1.1e-07 Score=58.57 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=31.2
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~ 64 (76)
...+||+++|+.+||||||+++++.+.|.. +.+|++.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~ 63 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF 63 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCce
Confidence 347999999999999999999999888874 5677764
No 105
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.36 E-value=1.5e-07 Score=59.38 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=26.1
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
...+||+++|+++||||||+++|+.+.|.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~ 55 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD 55 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 45799999999999999999999988775
No 106
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.36 E-value=1.5e-07 Score=64.12 Aligned_cols=37 Identities=27% Similarity=0.250 Sum_probs=30.3
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCC---cCCCceeEEEE
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHE---YQESTIGGCGN 67 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~---~~~~tig~~~~ 67 (76)
||+++|++|||||||+.++..+.++. .+.+|+|.++.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~ 40 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE 40 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE
Confidence 79999999999999998887665543 36789988765
No 107
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.36 E-value=1.5e-07 Score=58.48 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=32.4
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCC---cCCCceeEE
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHE---YQESTIGGC 65 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~---~~~~tig~~ 65 (76)
....+||+++|++|+|||||+++++.+.|.. .+.++++.+
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~ 51 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD 51 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE
Confidence 4457899999999999999999999988765 466776543
No 108
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.36 E-value=1.8e-07 Score=66.07 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=28.8
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~ 68 (76)
....+||+++|+++||||||+++++.+.|...+.+|++.++..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~ 80 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVT 80 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEE
Confidence 4567999999999999999999999999999999999988864
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.34 E-value=1.4e-07 Score=57.49 Aligned_cols=37 Identities=27% Similarity=0.269 Sum_probs=24.1
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCcee
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig 63 (76)
...+||+++|+.++|||||+++++.+.|...+.++.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~ 57 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPG 57 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCC
Confidence 4579999999999999999999998877666655554
No 110
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.33 E-value=1.8e-07 Score=57.95 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=25.6
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCcee
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig 63 (76)
..+||+++|+++||||||+++++.+.|. .|.+|++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~ 58 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH 58 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCC
Confidence 4689999999999999999999988775 3566654
No 111
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.32 E-value=1.1e-07 Score=57.85 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=30.8
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~ 64 (76)
...+||+++|+.+||||||+++++.+.|.. +.+|++.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~ 56 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV 56 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce
Confidence 357999999999999999999999888764 5667653
No 112
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.32 E-value=2.5e-07 Score=56.37 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=26.6
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCC---cCCCceeEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHE---YQESTIGGC 65 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~---~~~~tig~~ 65 (76)
...+||+++|+.|||||||+++++.+.|.. .+.++++.+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~ 87 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD 87 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee
Confidence 457899999999999999999999887755 344555443
No 113
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.30 E-value=3.1e-07 Score=54.43 Aligned_cols=27 Identities=41% Similarity=0.492 Sum_probs=22.2
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
.+||+++|+++||||||+++++...+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~ 28 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG 28 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC---
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc
Confidence 589999999999999999999865544
No 114
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.28 E-value=6.7e-07 Score=59.38 Aligned_cols=40 Identities=30% Similarity=0.303 Sum_probs=32.7
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhC--cCC-CcCCCceeEEEE
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRG--QFH-EYQESTIGGCGN 67 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~--~f~-~~~~~tig~~~~ 67 (76)
..+||+++|+++||||||+++++.+ .+. ..+.+|++.++.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~ 44 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS 44 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE
Confidence 3689999999999999999998877 333 357788887765
No 115
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.27 E-value=4.2e-07 Score=61.02 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=32.4
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG 66 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~ 66 (76)
...+||+|+|+.+||||||+.+|+.+.|...+ +|++.++
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~ 201 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV 201 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE
Confidence 45789999999999999999999998887654 6776554
No 116
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.21 E-value=6.7e-07 Score=54.08 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=25.4
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
...+||+++|+.++|||||+++++.+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~ 49 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA 49 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc
Confidence 45789999999999999999999987643
No 117
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.18 E-value=1.7e-06 Score=60.35 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=33.5
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN 67 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~ 67 (76)
....+||+++|+.+||||||+++|+.+.|.. +.+|++.++.
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~ 359 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE 359 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE
Confidence 4457999999999999999999999988765 4578776644
No 118
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.16 E-value=7.9e-07 Score=57.93 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=25.5
Q ss_pred ccceeeEEEECCCCCcchhhhhh-hhhCcCCCcC-------CCceeEEE
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLR-FVRGQFHEYQ-------ESTIGGCG 66 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~-~~~~~f~~~~-------~~tig~~~ 66 (76)
....|+|+++|.+|+|||||+++ +..+.+...+ .+|++.++
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~ 53 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQ 53 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEE
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEE
Confidence 44689999999999999999987 4556666666 66665543
No 119
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.15 E-value=8.1e-07 Score=56.47 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=26.7
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCC
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~ 60 (76)
....+||+|+|++|+|||||+++++...+.....+
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~ 60 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTA 60 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCC
Confidence 34579999999999999999999998777654433
No 120
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.12 E-value=1.1e-06 Score=51.65 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=23.0
Q ss_pred eeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
+|++++|+.++|||||+++++.+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~ 27 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSA 27 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCee
Confidence 68999999999999999999987643
No 121
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.08 E-value=1.3e-06 Score=53.87 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=22.5
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCcee
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig 63 (76)
..++++++|++|+|||||+++++...|...+.++.|
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G 60 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPG 60 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-----------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCc
Confidence 457899999999999999998887665444444444
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.04 E-value=1.2e-06 Score=56.87 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=28.0
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~ 64 (76)
.+||+++|++|||||||+++++...+...+.++++.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~ 38 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTV 38 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEE
Confidence 589999999999999999999877664434444433
No 123
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.03 E-value=2e-06 Score=52.06 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=23.3
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
.+|++++|+++||||||+++++...+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 57999999999999999999987654
No 124
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.95 E-value=4.1e-06 Score=54.45 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=24.7
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
..+||+++|+++||||||+++++...+.
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~ 31 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY 31 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc
Confidence 4689999999999999999999976654
No 125
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.91 E-value=7.1e-06 Score=52.84 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=24.8
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
....++|+|+|.+|+|||||+++++...+.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~ 47 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRF 47 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 345799999999999999999998876654
No 126
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.88 E-value=3.9e-06 Score=54.87 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=24.5
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcCCC
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQFHE 56 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f~~ 56 (76)
.++|+++|.++||||||+++++...+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v 30 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRV 30 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCccc
Confidence 5899999999999999999998766543
No 127
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.88 E-value=8e-06 Score=53.66 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.8
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQ 53 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~ 53 (76)
..+||+++|+++||||||+++++...
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCC
Confidence 35899999999999999999998754
No 128
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.87 E-value=1e-05 Score=51.86 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=27.3
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCc-CCCcCCC
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQ-FHEYQES 60 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~-f~~~~~~ 60 (76)
...++|+|+|++++|||||+++++... |...+.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~ 54 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGS 54 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCC
Confidence 457899999999999999999998766 5555544
No 129
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.87 E-value=9.9e-06 Score=55.07 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=23.3
Q ss_pred ccceeeEEEECCCCCcchhhhhhh-hhCcCCCcC
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRF-VRGQFHEYQ 58 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~-~~~~f~~~~ 58 (76)
....|+|+|+|++|+|||||++++ ..+.|...+
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC-----
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 455799999999999999999984 445555444
No 130
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.87 E-value=2.4e-05 Score=50.35 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=28.6
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG 75 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~ 75 (76)
+.++|++|+|||||++ .+.+... |+ .+++.++|+++..
T Consensus 34 ~~iiG~nGsGKSTLl~-~l~Gl~~----p~-~G~I~~~g~~~~~ 71 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLN-IIGCLDK----PT-EGEVYIDNIKTND 71 (235)
T ss_dssp EEEECSTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEECTT
T ss_pred EEEECCCCCcHHHHHH-HHhcCCC----CC-ceEEEECCEEccc
Confidence 6799999999999994 5555533 33 5788888887653
No 131
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.85 E-value=6.3e-06 Score=51.13 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.4
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQ 53 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~ 53 (76)
...+||+++|+.++|||||+++++.+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999999876
No 132
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.75 E-value=3.8e-05 Score=53.04 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=29.3
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG 75 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~ 75 (76)
+.++|++|||||||+ +.+.+... ++ .+++.++|+++..
T Consensus 32 ~~llGpsGsGKSTLL-r~iaGl~~----p~-~G~I~i~G~~~~~ 69 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLL-RMIAGLET----IT-SGDLFIGEKRMND 69 (381)
T ss_dssp EEEECCTTSSHHHHH-HHHHTSSC----CS-EEEEEETTEECTT
T ss_pred EEEEcCCCchHHHHH-HHHHcCCC----CC-CeEEEECCEECCC
Confidence 679999999999999 56666543 33 6788899988753
No 133
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.75 E-value=6.7e-06 Score=53.45 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.8
Q ss_pred eeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
.||+++|+++||||||+++++...+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~ 27 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR 27 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Confidence 48999999999999999999876554
No 134
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.75 E-value=4.7e-05 Score=49.34 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=28.5
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
.+.|+|++|+|||||++ .+.+... ++ .+++.++|+++.
T Consensus 37 ~~~i~G~nGsGKSTLl~-~l~Gl~~----p~-~G~I~i~g~~~~ 74 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTK-LIQRFYI----PE-NGQVLIDGHDLA 74 (247)
T ss_dssp EEEEECSTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEETT
T ss_pred EEEEECCCCCCHHHHHH-HHhcCCC----CC-CcEEEECCEEhh
Confidence 46799999999999995 5555532 33 578888888764
No 135
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.74 E-value=9.3e-06 Score=53.94 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=20.9
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhh-CcCCCcC
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVR-GQFHEYQ 58 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~-~~f~~~~ 58 (76)
-....|+|+|+|++|+|||||++++.. +.++..+
T Consensus 14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHC--------
T ss_pred EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 345679999999999999999988554 3555443
No 136
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.74 E-value=3.2e-05 Score=53.86 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=25.5
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
-....|+|+|+|++|+|||||++.++...+
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 455678999999999999999998887666
No 137
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.71 E-value=2.7e-05 Score=50.32 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.4
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
..+||+++|+.++|||||+++++...+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~ 61 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQV 61 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999999997764
No 138
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.70 E-value=4e-05 Score=50.27 Aligned_cols=38 Identities=21% Similarity=0.479 Sum_probs=28.1
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG 75 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~ 75 (76)
+.++|++|+|||||++ .+.+... ++ .+++.++|+++..
T Consensus 40 ~~liG~nGsGKSTLl~-~l~Gl~~----p~-~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLR-LLTGYLS----PS-HGECHLLGQNLNS 77 (266)
T ss_dssp EEEECCTTSCHHHHHH-HHTSSSC----CS-SCEEEETTEETTT
T ss_pred EEEECCCCCcHHHHHH-HHhcCCC----CC-CcEEEECCEECCc
Confidence 5799999999999995 5555533 33 4677888887753
No 139
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.70 E-value=3.5e-05 Score=51.67 Aligned_cols=39 Identities=28% Similarity=0.561 Sum_probs=29.4
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG 75 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~ 75 (76)
.+.|+|++|+|||||++ .+.+.+ .++ .+.+.++|+++..
T Consensus 82 ~vaivG~sGsGKSTLl~-ll~gl~----~p~-~G~I~i~G~~i~~ 120 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILR-LLFRFY----DIS-SGCIRIDGQDISQ 120 (306)
T ss_dssp EEEEESSSCHHHHHHHH-HHTTSS----CCS-EEEEEETTEETTS
T ss_pred EEEEECCCCchHHHHHH-HHHcCC----CCC-CcEEEECCEEccc
Confidence 36799999999999994 555543 343 6788899988754
No 140
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.69 E-value=5.8e-05 Score=48.15 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=27.5
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
+.++|++|+|||||++ .+.+... |+ .+.+.++|+++.
T Consensus 33 ~~iiG~nGsGKSTLl~-~l~Gl~~----p~-~G~i~~~g~~~~ 69 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLY-ILGLLDA----PT-EGKVFLEGKEVD 69 (224)
T ss_dssp EEEEECTTSCHHHHHH-HHTTSSC----CS-EEEEEETTEECC
T ss_pred EEEECCCCCCHHHHHH-HHhcCCC----CC-ceEEEECCEECC
Confidence 6799999999999995 5555533 33 567788887764
No 141
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.68 E-value=3.6e-05 Score=53.24 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.7
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
..+|++++|++|||||||+++++...+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcc
Confidence 358999999999999999999887654
No 142
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.67 E-value=5.8e-05 Score=51.68 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=28.2
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
+.++|++|||||||+ +.+.+... ++ .+++.++|+++.
T Consensus 32 ~~llGpnGsGKSTLL-r~iaGl~~----p~-~G~I~i~g~~i~ 68 (359)
T 2yyz_A 32 VALLGPSGCGKTTTL-LMLAGIYK----PT-SGEIYFDDVLVN 68 (359)
T ss_dssp EEEECSTTSSHHHHH-HHHHTSSC----CS-EEEEEETTEECT
T ss_pred EEEEcCCCchHHHHH-HHHHCCCC----CC-ccEEEECCEECC
Confidence 679999999999999 46656533 33 577888888764
No 143
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.66 E-value=6.5e-05 Score=49.59 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=27.7
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR 73 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~ 73 (76)
+.|+|++|+|||||++ .+.+... ++ .+++.++|+++
T Consensus 37 ~~iiGpnGsGKSTLl~-~l~Gl~~----p~-~G~I~~~G~~i 72 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQ-NFNGILK----PS-SGRILFDNKPI 72 (275)
T ss_dssp EEEECCTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEEC
T ss_pred EEEECCCCCCHHHHHH-HHHcCCC----CC-CeEEEECCEEC
Confidence 6799999999999995 5555543 33 57888898876
No 144
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.66 E-value=7.1e-05 Score=51.30 Aligned_cols=37 Identities=32% Similarity=0.470 Sum_probs=28.1
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
+.++|++|||||||+ +.+.+... ++ .+.+.++|+++.
T Consensus 32 ~~llGpnGsGKSTLL-r~iaGl~~----p~-~G~I~i~g~~i~ 68 (362)
T 2it1_A 32 MALLGPSGSGKSTLL-YTIAGIYK----PT-SGKIYFDEKDVT 68 (362)
T ss_dssp EEEECCTTSSHHHHH-HHHHTSSC----CS-EEEEEETTEECT
T ss_pred EEEECCCCchHHHHH-HHHhcCCC----CC-ceEEEECCEECC
Confidence 679999999999999 46656533 33 577888888764
No 145
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.65 E-value=3.1e-05 Score=50.15 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=25.7
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
...+||+++|++++|||||+++++...|.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 45689999999999999999999988774
No 146
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.65 E-value=7.3e-05 Score=51.38 Aligned_cols=37 Identities=38% Similarity=0.491 Sum_probs=28.1
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
+.++|++|||||||+ +.+.+... ++ .+.+.++|+++.
T Consensus 40 ~~llGpnGsGKSTLL-r~iaGl~~----p~-~G~I~i~g~~i~ 76 (372)
T 1v43_A 40 LVLLGPSGCGKTTTL-RMIAGLEE----PT-EGRIYFGDRDVT 76 (372)
T ss_dssp EEEECCTTSSHHHHH-HHHHTSSC----CS-EEEEEETTEECT
T ss_pred EEEECCCCChHHHHH-HHHHcCCC----CC-ceEEEECCEECC
Confidence 679999999999999 46666533 33 577888888764
No 147
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.64 E-value=6.8e-05 Score=51.57 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=29.0
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG 75 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~ 75 (76)
+.++|++|+|||||+ +.+.+... |+ .+.+.++|+++..
T Consensus 57 ~~IiGpnGaGKSTLl-r~i~GL~~----p~-~G~I~i~G~~i~~ 94 (366)
T 3tui_C 57 YGVIGASGAGKSTLI-RCVNLLER----PT-EGSVLVDGQELTT 94 (366)
T ss_dssp EEEECCTTSSHHHHH-HHHHTSSC----CS-EEEEEETTEECSS
T ss_pred EEEEcCCCchHHHHH-HHHhcCCC----CC-ceEEEECCEECCc
Confidence 569999999999999 46655532 33 6788899988753
No 148
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.64 E-value=6.9e-05 Score=51.24 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=28.0
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
+.++|++|||||||++ .+.+... ++ .+++.++|+++.
T Consensus 44 ~~llGpnGsGKSTLLr-~iaGl~~----p~-~G~I~i~g~~i~ 80 (355)
T 1z47_A 44 VGLLGPSGSGKTTILR-LIAGLER----PT-KGDVWIGGKRVT 80 (355)
T ss_dssp EEEECSTTSSHHHHHH-HHHTSSC----CS-EEEEEETTEECT
T ss_pred EEEECCCCCcHHHHHH-HHhCCCC----CC-ccEEEECCEECC
Confidence 6799999999999994 5656533 33 577888888764
No 149
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.64 E-value=4.3e-05 Score=52.38 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=27.4
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR 73 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~ 73 (76)
+.++|++|||||||+ +.+.+... ++ .+++.++|+++
T Consensus 33 ~~llGpsGsGKSTLL-r~iaGl~~----p~-~G~I~i~G~~i 68 (359)
T 3fvq_A 33 LFIIGASGCGKTTLL-RCLAGFEQ----PD-SGEISLSGKTI 68 (359)
T ss_dssp EEEEESTTSSHHHHH-HHHHTSSC----CS-EEEEEETTEEE
T ss_pred EEEECCCCchHHHHH-HHHhcCCC----CC-CcEEEECCEEC
Confidence 679999999999999 46656533 33 57788888776
No 150
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.64 E-value=5.6e-05 Score=52.24 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=29.4
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG 75 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~ 75 (76)
.+.|+|++|||||||+ +.+.+.. + ..+++.++|+++..
T Consensus 49 ~~~llGpsGsGKSTLL-r~iaGl~-----~-~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLL-SAFLRLL-----N-TEGEIQIDGVSWDS 86 (390)
T ss_dssp EEEEEESTTSSHHHHH-HHHHTCS-----E-EEEEEEESSCBTTS
T ss_pred EEEEECCCCChHHHHH-HHHhCCC-----C-CCeEEEECCEECCc
Confidence 3679999999999999 5666653 2 25888999988754
No 151
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.63 E-value=9.3e-05 Score=47.65 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=27.5
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
+.++|++|+|||||++ .+.+... |+ .+++.++|+++.
T Consensus 35 ~~l~G~nGsGKSTLl~-~l~Gl~~----p~-~G~i~~~g~~~~ 71 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLS-AIAGLVR----AQ-KGKIIFNGQDIT 71 (240)
T ss_dssp EEEECSTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEECT
T ss_pred EEEECCCCCCHHHHHH-HHhCCCC----CC-CceEEECCEECC
Confidence 6799999999999995 5555532 33 577788887764
No 152
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.62 E-value=9.4e-05 Score=48.05 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=27.6
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
+.++|++|+|||||++ .+.+... |+ .+++.++|+++.
T Consensus 36 ~~liG~nGsGKSTLlk-~l~Gl~~----p~-~G~i~~~g~~~~ 72 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLIN-VITGFLK----AD-EGRVYFENKDIT 72 (257)
T ss_dssp EEEECSTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEECT
T ss_pred EEEECCCCCCHHHHHH-HHhCCCC----CC-CcEEEECCEECC
Confidence 6799999999999995 5555533 33 577888887764
No 153
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.62 E-value=2.1e-05 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.685 Sum_probs=20.5
Q ss_pred ceeeEEEECCCCCcchhhhhhhhh
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~ 51 (76)
+.|++.++|++|+|||||++.++.
T Consensus 1 f~f~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp CEEEEEEEESSSSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhC
Confidence 368999999999999999976553
No 154
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.62 E-value=7.9e-05 Score=48.64 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=27.3
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
+.|+|++|+|||||++ .+.+... |+ .+.+.++|+++.
T Consensus 35 ~~liG~nGsGKSTLlk-~l~Gl~~----p~-~G~i~~~g~~~~ 71 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLR-CINFLEK----PS-EGAIIVNGQNIN 71 (262)
T ss_dssp EEEECCTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEECC
T ss_pred EEEECCCCCCHHHHHH-HHhcCCC----CC-CcEEEECCEEcc
Confidence 6799999999999995 5555533 33 577788887763
No 155
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.61 E-value=9.4e-05 Score=47.82 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=28.0
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
.+.++|++|+|||||++ .+.+... |+ .+++.++|+++.
T Consensus 26 ~~~liG~nGsGKSTLl~-~l~Gl~~----p~-~G~i~~~g~~~~ 63 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLE-LIAGIVK----PD-RGEVRLNGADIT 63 (240)
T ss_dssp EEEEECCTTSSHHHHHH-HHHTSSC----CS-EEEEEETTEECT
T ss_pred EEEEECCCCCCHHHHHH-HHhCCCC----CC-ceEEEECCEECC
Confidence 46799999999999995 5555533 33 577788887763
No 156
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.61 E-value=3.1e-05 Score=50.14 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=24.4
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
..++|+++|++|+|||||+++++...+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~ 64 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERV 64 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999999987765
No 157
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.60 E-value=6.3e-05 Score=48.48 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=26.7
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
.+.++|++|+|||||++ .+.+... ++ .+.+.++|+++.
T Consensus 30 ~~~i~G~nGsGKSTLl~-~l~Gl~~----p~-~G~i~~~g~~~~ 67 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFS-LLERFYQ----PT-AGEITIDGQPID 67 (243)
T ss_dssp EEEEECCTTSSHHHHHH-HHTTSSC----CS-BSCEEETTEEST
T ss_pred EEEEECCCCCCHHHHHH-HHhcCCC----CC-CcEEEECCEEhh
Confidence 47899999999999995 5555533 22 456667776653
No 158
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.59 E-value=6.5e-05 Score=48.86 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=27.0
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR 73 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~ 73 (76)
.+.++|++|+|||||++ .+.+.. .++ +++.++|+++
T Consensus 28 ~~~liG~NGsGKSTLlk-~l~Gl~----~p~--G~i~~~g~~~ 63 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLA-RMAGMT----SGK--GSIQFAGQPL 63 (249)
T ss_dssp EEEEECCTTSSHHHHHH-HHTTSS----CCE--EEEEETTEEG
T ss_pred EEEEECCCCCcHHHHHH-HHhCCC----CCC--eEEEECCEEC
Confidence 36799999999999995 555553 355 6778888765
No 159
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.58 E-value=0.00011 Score=48.41 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=27.7
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
+.|+|++|+|||||++ .+.+... ++ .+++.++|+++.
T Consensus 50 ~~liG~NGsGKSTLlk-~l~Gl~~----p~-~G~I~~~g~~~~ 86 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLN-ILNAYEP----AT-SGTVNLFGKMPG 86 (279)
T ss_dssp EEEECCTTSSHHHHHH-HHTTSSC----CS-EEEEEETTBCCC
T ss_pred EEEECCCCCcHHHHHH-HHhCCCC----CC-CeEEEECCEEcc
Confidence 6799999999999995 5555533 33 577888887764
No 160
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.58 E-value=6.5e-05 Score=51.19 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=28.6
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
.+.++|++|||||||+ +.+.+... ++ .+++.++|+++.
T Consensus 28 ~~~llGpnGsGKSTLL-r~iaGl~~----p~-~G~I~~~g~~i~ 65 (348)
T 3d31_A 28 YFVILGPTGAGKTLFL-ELIAGFHV----PD-SGRILLDGKDVT 65 (348)
T ss_dssp EEEEECCCTHHHHHHH-HHHHTSSC----CS-EEEEEETTEECT
T ss_pred EEEEECCCCccHHHHH-HHHHcCCC----CC-CcEEEECCEECC
Confidence 3679999999999999 46656533 33 577888888764
No 161
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.57 E-value=9.1e-05 Score=48.60 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=27.5
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
+.|+|++|+|||||++ .+.+... |+ .+.+.++|+++.
T Consensus 48 ~~i~G~nGsGKSTLlk-~l~Gl~~----p~-~G~I~~~g~~i~ 84 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAA-LLQNLYQ----PT-GGKVLLDGEPLV 84 (271)
T ss_dssp EEEECSTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEEGG
T ss_pred EEEECCCCCCHHHHHH-HHhcCCC----CC-CCEEEECCEEcc
Confidence 6799999999999995 5555533 33 577888887753
No 162
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.56 E-value=0.00011 Score=48.20 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=27.1
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR 73 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~ 73 (76)
+.|+|++|+|||||++ .+.+... |+ .+++.++|+++
T Consensus 53 ~~liG~NGsGKSTLlk-~l~Gl~~----p~-~G~I~~~g~~i 88 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLR-CLNLLED----FD-EGEIIIDGINL 88 (263)
T ss_dssp EEEECCTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEES
T ss_pred EEEEcCCCCcHHHHHH-HHHcCCC----CC-CcEEEECCEEC
Confidence 6799999999999995 5555532 33 57788888776
No 163
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.52 E-value=8.9e-05 Score=50.89 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=26.7
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR 73 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~ 73 (76)
+.++|++|||||||+ +.+.+... ++ .+++.++|+++
T Consensus 32 ~~llGpnGsGKSTLL-r~iaGl~~----p~-~G~I~i~g~~~ 67 (372)
T 1g29_1 32 MILLGPSGCGKTTTL-RMIAGLEE----PS-RGQIYIGDKLV 67 (372)
T ss_dssp EEEECSTTSSHHHHH-HHHHTSSC----CS-EEEEEETTEEE
T ss_pred EEEECCCCcHHHHHH-HHHHcCCC----CC-ccEEEECCEEC
Confidence 679999999999999 46656533 33 56777777765
No 164
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.49 E-value=0.00013 Score=46.45 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=26.1
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR 73 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~ 73 (76)
+.++|++|+|||||++ .+.+... ++ .+++.++|+++
T Consensus 38 ~~iiG~NGsGKSTLlk-~l~Gl~~----p~-~G~I~~~g~~~ 73 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLK-TISTYLK----PL-KGEIIYNGVPI 73 (214)
T ss_dssp EEEECCTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEEG
T ss_pred EEEECCCCCCHHHHHH-HHhcCCC----CC-CeEEEECCEEh
Confidence 6799999999999995 5555532 33 56777777654
No 165
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.48 E-value=0.00018 Score=46.91 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=27.2
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
+.|+|++|+|||||++ .+.+... |+ .+++.++|+++.
T Consensus 44 ~~l~G~NGsGKSTLlk-~l~Gl~~----p~-~G~I~~~g~~~~ 80 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLR-IISTLIK----PS-SGIVTVFGKNVV 80 (256)
T ss_dssp EEEECCTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEETT
T ss_pred EEEECCCCCCHHHHHH-HHhcCCC----CC-ceEEEECCEECC
Confidence 6799999999999995 5555532 33 577788887653
No 166
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.47 E-value=3.4e-05 Score=53.29 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=24.5
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
..+|++++|+++||||||+++++...+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~ 200 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEER 200 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 468999999999999999999998765
No 167
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.47 E-value=0.00018 Score=46.97 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=27.1
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR 73 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~ 73 (76)
.+.++|++|+|||||++ .+.+... ++ .+++.++|+++
T Consensus 35 ~~~liG~nGsGKSTLl~-~i~Gl~~----p~-~G~I~~~g~~~ 71 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQ-IVAGLIE----PT-SGDVLYDGERK 71 (266)
T ss_dssp EEEEECSTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEEC
T ss_pred EEEEECCCCCcHHHHHH-HHhCCCC----CC-CcEEEECCEEC
Confidence 36799999999999995 5555532 33 57777888765
No 168
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.46 E-value=3e-05 Score=48.12 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=23.5
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
...+++++|..|+|||||+.+++...+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 4578999999999999999998875443
No 169
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.43 E-value=0.00016 Score=47.07 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=27.6
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
.+.++|++|+|||||++ .+.+... + .+.+.++|+++.
T Consensus 48 ~~~i~G~nGsGKSTLl~-~l~Gl~~----~--~G~I~i~g~~i~ 84 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAK-LLYRFYD----A--EGDIKIGGKNVN 84 (260)
T ss_dssp EEEEECSTTSSHHHHHH-HHTTSSC----C--EEEEEETTEEGG
T ss_pred EEEEECCCCCCHHHHHH-HHhccCC----C--CeEEEECCEEhh
Confidence 47899999999999995 5555532 2 478888887753
No 170
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.42 E-value=0.0002 Score=51.27 Aligned_cols=39 Identities=23% Similarity=0.407 Sum_probs=29.2
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG 75 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~ 75 (76)
++.++|++|+|||||++ .+.+.. .|+ .+++.++|+++..
T Consensus 372 ~~~ivG~sGsGKSTLl~-~l~g~~----~p~-~G~i~~~g~~i~~ 410 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLS-LLLRLY----DPA-SGTISLDGHDIRQ 410 (595)
T ss_dssp EEEEECCTTSSSTHHHH-HHTTSS----CCS-EEEEEETTEETTT
T ss_pred EEEEECCCCCCHHHHHH-HHhcCc----CCC-CcEEEECCEEhhh
Confidence 46799999999999995 554543 343 5788899988753
No 171
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.41 E-value=9.2e-05 Score=49.14 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.6
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
...+++++|.++||||||+++++...+.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ 33 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVA 33 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCcee
Confidence 4567999999999999999999987764
No 172
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.39 E-value=8.9e-05 Score=50.55 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=26.6
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR 73 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~ 73 (76)
+.++|++|||||||++ .+.+... ++ .+++.++|+++
T Consensus 34 ~~llGpnGsGKSTLLr-~iaGl~~----p~-~G~I~i~g~~i 69 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMR-IIAGLDV----PS-TGELYFDDRLV 69 (353)
T ss_dssp EEEECSCHHHHHHHHH-HHHTSSC----CS-EEEEEETTEEE
T ss_pred EEEECCCCCcHHHHHH-HHhCCCC----CC-ceEEEECCEEC
Confidence 6799999999999994 6656533 33 56777777765
No 173
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.39 E-value=0.00025 Score=45.85 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=27.8
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
+.++|++|+|||||++ .+.+.. .+.++ .+++.++|+++.
T Consensus 32 ~~l~G~nGsGKSTLlk-~l~Gl~--~~~p~-~G~I~~~g~~~~ 70 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGK-ILAGDP--EYTVE-RGEILLDGENIL 70 (250)
T ss_dssp EEEECSTTSSHHHHHH-HHHTCT--TCEEE-EEEEEETTEECT
T ss_pred EEEECCCCCCHHHHHH-HHhCCC--CCCCC-ceEEEECCEECC
Confidence 6799999999999995 555541 12233 577888888764
No 174
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.38 E-value=0.00016 Score=47.88 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=26.1
Q ss_pred ccccceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
..+...-+|.++|.++||||||+++++...+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~ 36 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS 36 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence 34455779999999999999999999987765
No 175
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.37 E-value=0.00013 Score=49.15 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.8
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
..+|+|+|++++|||||+++++...|.
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~l 60 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFL 60 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcC
Confidence 449999999999999999999987764
No 176
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.36 E-value=8.5e-05 Score=45.41 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.1
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.++|+|++|+|||||++.+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999976654
No 177
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.36 E-value=0.00021 Score=51.37 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=29.0
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
++.++|++|+|||||++ .+.+.+ .|+ .+++.++|+|+.
T Consensus 383 ~~~ivG~sGsGKSTll~-~l~g~~----~p~-~G~i~~~g~~i~ 420 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVN-LLMRFY----DVD-RGQILVDGIDIR 420 (598)
T ss_dssp EEEEECCTTSSTTHHHH-HHTTSS----CCS-EEEEEETTEEGG
T ss_pred EEEEECCCCCcHHHHHH-HHhcCc----CCC-CeEEEECCEEhh
Confidence 57899999999999995 555553 343 578889998765
No 178
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.35 E-value=0.00022 Score=50.92 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=29.2
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG 75 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~ 75 (76)
++.++|++|+|||||++ .+.+.. .|+ .+++.++|+++..
T Consensus 371 ~~~ivG~sGsGKSTLl~-~l~g~~----~p~-~G~i~~~g~~~~~ 409 (582)
T 3b60_A 371 TVALVGRSGSGKSTIAS-LITRFY----DID-EGHILMDGHDLRE 409 (582)
T ss_dssp EEEEEECTTSSHHHHHH-HHTTTT----CCS-EEEEEETTEETTT
T ss_pred EEEEECCCCCCHHHHHH-HHhhcc----CCC-CCeEEECCEEccc
Confidence 47899999999999995 554543 343 5788899988753
No 179
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.34 E-value=0.00018 Score=51.42 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=28.6
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
++.++|++|+|||||++ .+.+.+ .|+ .+++.++|+|+.
T Consensus 369 ~~~ivG~sGsGKSTll~-~l~g~~----~p~-~G~i~~~g~~~~ 406 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLIN-LIPRFY----DVT-SGQILIDGHNIK 406 (578)
T ss_dssp EEEEECSTTSSHHHHHT-TTTTSS----CCS-EEEEEETTEEGG
T ss_pred EEEEECCCCChHHHHHH-HHhcCC----CCC-CcEEEECCEEhh
Confidence 46799999999999995 444443 344 578889998765
No 180
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.33 E-value=0.00027 Score=46.28 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=26.4
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR 73 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~ 73 (76)
.+.++|++|+|||||++ .+.+.. |+ .+.+.++|+++
T Consensus 32 ~~~i~G~NGsGKSTLlk-~l~Gl~-----p~-~G~I~~~g~~~ 67 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLR-AISGLL-----PY-SGNIFINGMEV 67 (263)
T ss_dssp EEEEECCTTSSHHHHHH-HHTTSS-----CC-EEEEEETTEEG
T ss_pred EEEEECCCCCCHHHHHH-HHhCCC-----CC-CcEEEECCEEC
Confidence 57899999999999995 555553 22 56777777654
No 181
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.33 E-value=0.00016 Score=49.60 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=26.1
Q ss_pred cceeeEEEECCCCCcchhhhhhhh---hCcCCCcCCC--ceeEEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFV---RGQFHEYQES--TIGGCG 66 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~---~~~f~~~~~~--tig~~~ 66 (76)
...++|+++|..++|||||+.+++ .+.+.+.+.+ |+...|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~ 50 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGY 50 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecc
Confidence 357899999999999999999887 3344444444 665443
No 182
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.31 E-value=5.5e-05 Score=52.30 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
.+|+++|.++||||||++|++...+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~ 26 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK 26 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4799999999999999999997653
No 183
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.28 E-value=0.00023 Score=51.08 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=28.8
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
++.++|++|+|||||++ .+.+.+ .++ .+++.++|+|+.
T Consensus 371 ~~~ivG~sGsGKSTll~-~l~g~~----~~~-~G~i~i~g~~i~ 408 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMN-LIPRLI----DPE-RGRVEVDELDVR 408 (587)
T ss_dssp EEEEECSSSSSHHHHHH-TTTTSS----CCS-EEEEEESSSBGG
T ss_pred EEEEECCCCCCHHHHHH-HHhCCc----cCC-CcEEEECCEEcc
Confidence 47899999999999995 554443 343 678889998875
No 184
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.28 E-value=0.00011 Score=45.67 Aligned_cols=20 Identities=40% Similarity=0.624 Sum_probs=17.4
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.++|+|++|+|||||++.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLF 25 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999996554
No 185
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.28 E-value=0.00012 Score=45.95 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=18.0
Q ss_pred EEEECCCCCcchhhhhhhhh
Q psy1355 32 LVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~ 51 (76)
|||+|++|+||+||+++++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999987764
No 186
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.27 E-value=0.00029 Score=46.08 Aligned_cols=39 Identities=31% Similarity=0.451 Sum_probs=27.4
Q ss_pred EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
+.|+|++|+|||||++ .+.+... +.++ .+.+.++|+++.
T Consensus 49 ~~l~G~NGsGKSTLlk-~l~Gl~~--~~p~-~G~I~~~g~~i~ 87 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLSA-TLAGRED--YEVT-GGTVEFKGKDLL 87 (267)
T ss_dssp EEEECCTTSSHHHHHH-HHHTCTT--CEEE-EEEEEETTEEGG
T ss_pred EEEECCCCCCHHHHHH-HHhCCCC--CCCC-CeEEEECCEECC
Confidence 6799999999999995 5555421 2233 577888887653
No 187
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.26 E-value=0.00014 Score=44.91 Aligned_cols=20 Identities=45% Similarity=0.838 Sum_probs=17.2
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
++.++|++|+|||||++.++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999996444
No 188
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.26 E-value=0.00022 Score=55.37 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=29.6
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG 75 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~ 75 (76)
|+.++|++|+|||||+. .+.+. |+|+ .+.+.++|.|+..
T Consensus 1107 ~vaIVG~SGsGKSTL~~-lL~rl----~~p~-~G~I~iDG~di~~ 1145 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVA-LLERF----YDTL-GGEIFIDGSEIKT 1145 (1321)
T ss_dssp EEEEECSTTSSTTSHHH-HHTTS----SCCS-SSEEEETTEETTT
T ss_pred EEEEECCCCChHHHHHH-HHhcC----ccCC-CCEEEECCEEhhh
Confidence 57899999999999995 44333 3344 4678899998865
No 189
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.23 E-value=8e-05 Score=51.89 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=23.3
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
.....+||+++|+.++|||||+++++...+
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~ 59 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNV 59 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC---
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCC
Confidence 345689999999999999999999988776
No 190
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.21 E-value=9.4e-05 Score=52.15 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=21.2
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQ 53 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~ 53 (76)
..+||+++|++++|||||+++++...
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35899999999999999999998764
No 191
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.21 E-value=0.00025 Score=50.73 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=27.3
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
++.++|++|+|||||++ .+.+.+. |+ .+++.++|+++.
T Consensus 371 ~~~ivG~sGsGKSTll~-~l~g~~~----p~-~G~i~~~g~~~~ 408 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIAN-LFTRFYD----VD-SGSICLDGHDVR 408 (582)
T ss_pred EEEEECCCCCCHHHHHH-HHhcCCC----CC-CCEEEECCEEhh
Confidence 47899999999999995 5545432 33 466778887664
No 192
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.20 E-value=0.00011 Score=50.72 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=23.6
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
..+|+++|.++||||||+++++...+.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~ 29 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS 29 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce
Confidence 368999999999999999999876653
No 193
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.19 E-value=0.00027 Score=48.38 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=28.1
Q ss_pred cceeeEEEECCCCCcchhhhhhhh---hCcCCCcCCC--ceeEE
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFV---RGQFHEYQES--TIGGC 65 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~---~~~f~~~~~~--tig~~ 65 (76)
...++|+++|..++|||||+.+++ .+.+.+.+.+ |+...
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~ 51 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG 51 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEe
Confidence 457899999999999999999987 3344544444 66444
No 194
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.19 E-value=0.00016 Score=44.30 Aligned_cols=19 Identities=37% Similarity=0.662 Sum_probs=16.6
Q ss_pred EEEECCCCCcchhhhhhhh
Q psy1355 32 LVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~ 50 (76)
++|+|++|+|||||++.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEEESSSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999997655
No 195
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.18 E-value=0.00026 Score=48.22 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=20.8
Q ss_pred ee-EEEECCCCCcchhhhhhhhhCcC
Q psy1355 30 YK-LVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 30 ~k-ivllG~~~vGKtsl~~~~~~~~f 54 (76)
++ ++++|++|+|||||+++++...+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCc
Confidence 45 88999999999999999887665
No 196
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.15 E-value=0.00019 Score=47.42 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.9
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
..+++++|++++|||||+++++...+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~ 33 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKI 33 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 45799999999999999999987655
No 197
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.14 E-value=0.00023 Score=47.86 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=25.3
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
....+|+|+|+.++|||||+++++...|.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 34679999999999999999999987763
No 198
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.14 E-value=0.00051 Score=44.09 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=18.2
Q ss_pred eEEEECCCCCcchhhhhhhhhCcC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f 54 (76)
.+.++|++|+|||||++ .+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~-~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLS-ALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHH-HHTTCS
T ss_pred EEEEECCCCCCHHHHHH-HHhcCC
Confidence 46899999999999995 554543
No 199
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.13 E-value=0.00012 Score=50.85 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=23.9
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
..+|+++|.++||||||+++++...+.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~ 49 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERIS 49 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 579999999999999999999876654
No 200
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.13 E-value=0.00053 Score=53.30 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=30.2
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG 75 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~ 75 (76)
++.++|++|+|||||++ .+.+. |+++ .+.+.++|.|+.+
T Consensus 446 ~vaivG~sGsGKSTll~-ll~~~----~~~~-~G~I~idG~~i~~ 484 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIIS-LLLRY----YDVL-KGKITIDGVDVRD 484 (1321)
T ss_dssp EEEEEECSSSCHHHHHH-HHTTS----SCCS-EEEEEETTEETTT
T ss_pred EEEEEecCCCcHHHHHH-Hhccc----cccc-cCcccCCCccchh
Confidence 47899999999999995 55444 3444 6788999998765
No 201
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.12 E-value=0.00018 Score=43.73 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=15.9
Q ss_pred eEEEECCCCCcchhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLR 48 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~ 48 (76)
-++++|++|+|||||++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467999999999999974
No 202
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.12 E-value=0.00021 Score=45.24 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=18.1
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.++|+|++|+|||||++.++.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999977664
No 203
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.12 E-value=0.00025 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.2
Q ss_pred eeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
+|++++|.++||||||+++++...+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~ 27 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI 27 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Confidence 6899999999999999999987664
No 204
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.12 E-value=0.00022 Score=43.70 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=17.5
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.++|+|++|+|||||++.+..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999965553
No 205
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.12 E-value=0.00012 Score=50.83 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=22.2
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
...+++.++|.++||||||+++++...+
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~ 47 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA 47 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 3458999999999999999998887654
No 206
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.12 E-value=0.00021 Score=45.51 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=17.7
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++|+|++|+|||||++.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999976553
No 207
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.11 E-value=0.00072 Score=43.16 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=18.2
Q ss_pred eEEEECCCCCcchhhhhhhhhCcC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f 54 (76)
.+.++|++|+|||||++ .+.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~-~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLM-MIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHH-HHTTSS
T ss_pred EEEEECCCCCCHHHHHH-HHhCCC
Confidence 46799999999999995 555553
No 208
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.11 E-value=0.00026 Score=46.25 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=24.7
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
....+|+|+|+.++|||||+++++...+
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 4467999999999999999999987765
No 209
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.11 E-value=0.0006 Score=47.33 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.0
Q ss_pred ccceeeEEEECCCCCcchhhhhhhh
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~ 50 (76)
....++++++|..++|||||+.+++
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll 38 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIM 38 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHH
Confidence 3457899999999999999999884
No 210
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.10 E-value=0.00022 Score=44.33 Aligned_cols=20 Identities=50% Similarity=0.564 Sum_probs=16.7
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.++|+|++|+|||||++.+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999996443
No 211
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.08 E-value=0.00027 Score=47.61 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.7
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
..++++++|++|||||||+++++...+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~ 192 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP 192 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999887654
No 212
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.07 E-value=0.00024 Score=44.78 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=17.5
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.++|+|++|+|||||++.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999965543
No 213
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.06 E-value=0.00024 Score=49.91 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.5
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
..+||+++|++++|||||+++++...+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 468999999999999999999987643
No 214
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.05 E-value=0.00027 Score=44.10 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.1
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++|+|++|+|||||++.+..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478899999999999977664
No 215
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.03 E-value=0.00046 Score=47.20 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.5
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhC
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRG 52 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~ 52 (76)
....+||+++|+.++|||||+++++..
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 345799999999999999999998863
No 216
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.01 E-value=0.00034 Score=45.63 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=22.0
Q ss_pred eeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
++++++|.++||||||++++....+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6999999999999999998886544
No 217
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.01 E-value=6e-05 Score=54.02 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=29.0
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEE
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~ 65 (76)
..+|+++|+.++|||||+.++....+...+.+++..+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~ 40 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQH 40 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEE
Confidence 5689999999999999999998776655555555444
No 218
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.97 E-value=0.00032 Score=42.53 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=17.9
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.++++|++|+||||+++.+..
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999976654
No 219
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.94 E-value=0.00079 Score=52.20 Aligned_cols=38 Identities=26% Similarity=0.519 Sum_probs=28.8
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~ 74 (76)
++.++|++|+|||||++ .+.+.+ .++ .+.+.++|+|+.
T Consensus 418 ~~~ivG~sGsGKSTl~~-ll~g~~----~~~-~G~i~i~g~~i~ 455 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQ-LMQRLY----DPL-DGMVSIDGQDIR 455 (1284)
T ss_dssp EEEEECCSSSSHHHHHH-HTTTSS----CCS-EEEEEETTEEGG
T ss_pred EEEEECCCCCCHHHHHH-HHhCCC----CCC-CeEEEECCEEHH
Confidence 47899999999999994 554443 343 578889998764
No 220
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.92 E-value=0.00062 Score=44.98 Aligned_cols=22 Identities=36% Similarity=0.297 Sum_probs=17.9
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
-.+.++|++|+|||||++.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 3578999999999999965553
No 221
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.91 E-value=0.0005 Score=42.73 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.3
Q ss_pred eeeEEEECCCCCcchhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~ 50 (76)
-..+.|+|++|+|||||++.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678899999999999996443
No 222
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.90 E-value=0.00021 Score=50.47 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=23.0
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
.+||+++|.+++|||||+++++...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~ 268 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDR 268 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTB
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCC
Confidence 38999999999999999999987653
No 223
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.89 E-value=0.00046 Score=42.74 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=18.6
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
.-++|+|++|+|||||.+++..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999977654
No 224
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.88 E-value=0.00042 Score=48.51 Aligned_cols=27 Identities=30% Similarity=0.483 Sum_probs=23.3
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhC
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRG 52 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~ 52 (76)
....+||+++|..++|||||+.+++..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHh
Confidence 345799999999999999999998754
No 225
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.84 E-value=0.00052 Score=42.97 Aligned_cols=20 Identities=25% Similarity=0.659 Sum_probs=17.3
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
-++++|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47789999999999997665
No 226
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.84 E-value=0.00058 Score=47.37 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=23.6
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQ 53 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~ 53 (76)
...+|++++|++++|||||+++++...
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~ 219 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEE 219 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999998653
No 227
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.81 E-value=0.0005 Score=47.39 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.5
Q ss_pred eeEEEECCCCCcchhhhhhhhhCc
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVRGQ 53 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~~~ 53 (76)
+|++++|.++||||||+++++...
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 589999999999999999988765
No 228
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.81 E-value=0.0014 Score=50.78 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=29.6
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG 75 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~ 75 (76)
++.++|++|+|||||++ .+.+.+ .++ .+.+.++|+|+..
T Consensus 1061 ~v~ivG~sGsGKSTl~~-~l~g~~----~p~-~G~I~i~g~~i~~ 1099 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQ-LLERFY----DPM-AGSVFLDGKEIKQ 1099 (1284)
T ss_dssp EEEEECSSSTTHHHHHH-HHTTSS----CCS-EEEEESSSSCTTS
T ss_pred EEEEECCCCCCHHHHHH-HHhcCc----CCC-CCEEEECCEEccc
Confidence 47899999999999995 554443 343 6788999988764
No 229
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.80 E-value=0.0014 Score=43.51 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=17.7
Q ss_pred eEEEECCCCCcchhhhhhhhhCc
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQ 53 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~ 53 (76)
.+.++|++|+|||||++ .+.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk-~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLM-MIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHH-HHTTS
T ss_pred EEEEECCCCCcHHHHHH-HHhcC
Confidence 36799999999999995 55454
No 230
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.80 E-value=0.00049 Score=43.29 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=13.4
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.++|+|++|+|||||++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999997665
No 231
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.79 E-value=0.00066 Score=40.21 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=18.1
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.|+|+|.+|+||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999976654
No 232
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.79 E-value=0.00069 Score=47.43 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=19.2
Q ss_pred eeeEEEECCCCCcchhhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~ 51 (76)
.|++.|+|++|+|||||++.++.
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 35699999999999999976554
No 233
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.77 E-value=0.00064 Score=41.52 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=18.0
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.++|+|++|+||||+++.+..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999976554
No 234
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.76 E-value=0.00056 Score=42.31 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.0
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.+.|+|++|+|||||++.++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999977664
No 235
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.75 E-value=0.0012 Score=47.15 Aligned_cols=29 Identities=14% Similarity=0.254 Sum_probs=25.5
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
....+|+|+|..++|||||+++++...+.
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 45789999999999999999999987763
No 236
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.75 E-value=0.00068 Score=41.21 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=17.6
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.++++|++|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999976653
No 237
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.74 E-value=0.00085 Score=45.43 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.8
Q ss_pred eeEEEECCCCCcchhhhhhhhhCc
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVRGQ 53 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~~~ 53 (76)
.+|+|+|.+++|||||+++++...
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEEC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCC
Confidence 367899999999999999888654
No 238
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.74 E-value=0.0007 Score=41.17 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=17.2
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.+.++|++|+|||||++-++.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999965443
No 239
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.74 E-value=0.00072 Score=40.34 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=17.6
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
..++|+|.+|+||||+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 358999999999999996544
No 240
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.72 E-value=0.00062 Score=46.65 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.1
Q ss_pred eeEEEECCCCCcchhhhhhhhhCc
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVRGQ 53 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~~~ 53 (76)
+++.++|.+++|||||+++++...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999998887643
No 241
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.71 E-value=0.00079 Score=39.84 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=17.8
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+++.|++|+|||++++.+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 478999999999999976654
No 242
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.70 E-value=0.00086 Score=41.33 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=18.4
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
-.|+++|.+|+||||+.+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999976553
No 243
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.67 E-value=0.0019 Score=46.50 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.9
Q ss_pred ccceeeEEEECCCCCcchhhhhhhh
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~ 50 (76)
....++|+++|..++|||||+.+++
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll 198 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIM 198 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHH
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHH
Confidence 3457899999999999999999885
No 244
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.67 E-value=0.00085 Score=41.38 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=17.6
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
..++|+|++|+||||+++.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 458899999999999996554
No 245
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.67 E-value=0.00091 Score=42.48 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.2
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
..++|+|++|+||||+++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999997655
No 246
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.66 E-value=0.00085 Score=41.39 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=18.0
Q ss_pred eeeEEEECCCCCcchhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~ 50 (76)
-..++|+|++|+||||+.+.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3568899999999999986544
No 247
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.66 E-value=0.0013 Score=42.68 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=18.1
Q ss_pred eEEEECCCCCcchhhhhhhhhCcC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f 54 (76)
.+.++|++|+|||||++ .+.+..
T Consensus 33 ~~~l~G~nGsGKSTLl~-~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLD-LLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHH-HHTTSS
T ss_pred EEEEECCCCCCHHHHHH-HHhCCC
Confidence 36799999999999995 555553
No 248
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.64 E-value=0.00094 Score=40.00 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.0
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-|++.|.+|+||||+.+.+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999976654
No 249
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.61 E-value=0.0011 Score=45.81 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.1
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
...++.++|.+|+|||||++.++...+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~ 45 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVL 45 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 357899999999999999998887544
No 250
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.60 E-value=0.00078 Score=40.71 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=17.5
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
-.++++|++|+|||+|++.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999996554
No 251
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.60 E-value=0.0015 Score=47.61 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=22.7
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQ 53 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~ 53 (76)
....+++++|++++|||||+.+++...
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhc
Confidence 346789999999999999999988433
No 252
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.59 E-value=0.00088 Score=45.13 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=18.6
Q ss_pred eeeEEEECCCCCcchhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~ 50 (76)
.-|+.|+|++|+|||||++.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~ 191 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLA 191 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999996444
No 253
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.59 E-value=0.0012 Score=41.72 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=16.6
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.+.++|++|+|||||++-+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999996443
No 254
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.59 E-value=0.0011 Score=43.59 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=22.3
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQ 53 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~ 53 (76)
..++++++|.++||||||++++....
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 35789999999999999999887543
No 255
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.59 E-value=0.001 Score=41.52 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=16.8
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
++.++|++|+|||||++.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~ 22 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 57899999999999996443
No 256
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.59 E-value=0.0013 Score=46.21 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=23.1
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQ 53 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~ 53 (76)
..++++++|..++|||||+.+++...
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~ 43 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIA 43 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCC
Confidence 46899999999999999999988655
No 257
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.58 E-value=0.0011 Score=40.90 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=17.6
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
..+.|+|++|+|||||++.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~ 27 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALA 27 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999996443
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.58 E-value=0.0012 Score=38.84 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.4
Q ss_pred eeEEEECCCCCcchhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRF 49 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~ 49 (76)
..|+++|.+|+||||+...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999766
No 259
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0011 Score=48.03 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=23.0
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhC
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRG 52 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~ 52 (76)
...+||+++|..++|||||+.+++..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHh
Confidence 44789999999999999999998854
No 260
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.57 E-value=0.0013 Score=40.35 Aligned_cols=24 Identities=21% Similarity=0.552 Sum_probs=19.6
Q ss_pred ceeeEEEECCCCCcchhhhhhhhh
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~ 51 (76)
..+.|+|+|..|+||||+.+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999976553
No 261
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.57 E-value=0.0012 Score=40.85 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=18.6
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
++|+|.|.+|+||||+...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999976643
No 262
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.56 E-value=0.0012 Score=40.94 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.9
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
.+|.++|++|+||||+.+.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999996544
No 263
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.54 E-value=0.0011 Score=40.67 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=18.6
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|+|+|.+|+||||+.+.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999976653
No 264
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.52 E-value=0.0013 Score=40.70 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=18.7
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
++|+|+|.+|+||||+...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999976653
No 265
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.50 E-value=0.0012 Score=40.40 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.5
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
++|+|+|.+|+||||+.+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4789999999999999966554
No 266
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.50 E-value=0.0014 Score=44.21 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.8
Q ss_pred eeeEEEECCCCCcchhhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~ 51 (76)
...+.++|.+|+|||||+++++.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999998874
No 267
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.49 E-value=0.0014 Score=39.35 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=18.4
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|+|.|.+|+||||+...+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999976554
No 268
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.48 E-value=0.0017 Score=44.86 Aligned_cols=26 Identities=23% Similarity=0.338 Sum_probs=22.9
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhC
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRG 52 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~ 52 (76)
...+|++++|..++|||||+.+++.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~ 47 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHD 47 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhh
Confidence 44689999999999999999998754
No 269
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.47 E-value=0.0013 Score=40.47 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=17.7
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++++|++|+|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999987663
No 270
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.47 E-value=0.00096 Score=39.56 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=18.1
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
-.+++.|++|+|||++++.+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999976554
No 271
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.47 E-value=0.0015 Score=39.09 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=17.7
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
..++|+|.+|+||||+++.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 468899999999999996554
No 272
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.47 E-value=0.0015 Score=39.58 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=17.9
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.|++.|..|+||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999976554
No 273
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.45 E-value=0.0016 Score=39.29 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=18.5
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|+++|.+|+||||+...+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999976653
No 274
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.45 E-value=0.002 Score=39.39 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=19.1
Q ss_pred eeeEEEECCCCCcchhhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~ 51 (76)
...|+|.|..|+||||+..++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999976653
No 275
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.44 E-value=0.0018 Score=47.50 Aligned_cols=28 Identities=21% Similarity=0.468 Sum_probs=24.3
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~f 54 (76)
...++|+|+|+.++|||||++.++...+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~ 94 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENL 94 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3478999999999999999999986653
No 276
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.43 E-value=0.0019 Score=38.46 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=18.8
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|++.|.+|+||||+.+++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3588999999999999977765
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.43 E-value=0.0014 Score=42.70 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=17.0
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.++++|++|+||||+++.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 57899999999999996544
No 278
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.41 E-value=0.0022 Score=40.50 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=18.3
Q ss_pred eeeEEEECCCCCcchhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~ 50 (76)
-..+.|.|..|+||||+++.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999996544
No 279
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.41 E-value=0.0016 Score=44.98 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.4
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhC
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRG 52 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~ 52 (76)
..++++++|..++|||||+.+++..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998753
No 280
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.40 E-value=0.0016 Score=40.22 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=18.6
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..++++|.+|+|||||+.+++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4578999999999999987664
No 281
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.40 E-value=0.0018 Score=38.87 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=18.4
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|++.|.+|+||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999976543
No 282
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.37 E-value=0.002 Score=43.97 Aligned_cols=25 Identities=16% Similarity=0.196 Sum_probs=22.4
Q ss_pred cceeeEEEECCCCCcchhhhhhhhh
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~ 51 (76)
...++|+++|..++|||||+.+++.
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~ 33 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTY 33 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHh
Confidence 3468999999999999999998876
No 283
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.36 E-value=0.0016 Score=43.12 Aligned_cols=21 Identities=43% Similarity=0.683 Sum_probs=18.2
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
..++++|++|+|||||++.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999998766
No 284
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.35 E-value=0.0018 Score=38.75 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=16.9
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.++++|++|+|||+|++-+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999996544
No 285
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.35 E-value=0.0017 Score=43.49 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=16.4
Q ss_pred eEEEECCCCCcchhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRF 49 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~ 49 (76)
.+.|+|++|+|||||++.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL 146 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSL 146 (305)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5789999999999999643
No 286
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.35 E-value=0.0021 Score=43.83 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=21.3
Q ss_pred eeeEEEECCCCCcchhhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~ 51 (76)
.+||+++|..++|||||+.+++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~ 25 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITK 25 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhC
Confidence 58999999999999999998876
No 287
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.34 E-value=0.0018 Score=41.10 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=16.7
Q ss_pred EEEECCCCCcchhhhhhhh
Q psy1355 32 LVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~ 50 (76)
++++|++|+|||+|++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999999996554
No 288
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.34 E-value=0.0022 Score=39.39 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.5
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
+.+.++|.+|+||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999966553
No 289
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.33 E-value=0.0018 Score=39.92 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=18.4
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
-.+++.|++|+|||++++.+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999976553
No 290
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.32 E-value=0.0008 Score=41.42 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=17.1
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.+.|+|++|+|||||+..++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999996554
No 291
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.30 E-value=0.002 Score=44.13 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=18.2
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.++++|++|+|||||++.++.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 578999999999999976664
No 292
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.29 E-value=0.002 Score=39.27 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=17.7
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999976653
No 293
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.27 E-value=0.0024 Score=40.26 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=19.2
Q ss_pred eeeEEEECCCCCcchhhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~ 51 (76)
...|+++|..|+||||+...+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999876553
No 294
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.26 E-value=0.0021 Score=40.05 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=18.4
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+.++|++|+|||+|+..++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478899999999999987775
No 295
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.26 E-value=0.0021 Score=44.81 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=23.9
Q ss_pred eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCc
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGR 71 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~ 71 (76)
++.++|++|||||||++.+.. .. .++.| .+.+.|+
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag-~~----~~~~G-~i~~~G~ 193 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMAR-YT----RADVI-VVGLIGE 193 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-HS----CCSEE-EEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHhc-cc----CCCeE-EEEEece
Confidence 578999999999999865443 32 23443 5556555
No 296
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.25 E-value=0.0022 Score=42.17 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=18.9
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
.-++++|++|+||||+...+..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999977654
No 297
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.24 E-value=0.0027 Score=38.18 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=18.6
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|+++|..|+||||+...+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999976653
No 298
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.23 E-value=0.0021 Score=42.93 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=18.1
Q ss_pred eeeEEEECCCCCcchhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~ 50 (76)
-..+.|+|++|+|||||++.+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHH
Confidence 4568899999999999996443
No 299
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.23 E-value=0.0029 Score=40.41 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=17.7
Q ss_pred eee-EEEECCCCCcchhhhhhhhh
Q psy1355 29 QYK-LVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 29 ~~k-ivllG~~~vGKtsl~~~~~~ 51 (76)
..| |+|+|++|+||+|...++..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445 45789999999999876654
No 300
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.23 E-value=0.0022 Score=38.68 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=17.6
Q ss_pred EEEECCCCCcchhhhhhhhh
Q psy1355 32 LVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~ 51 (76)
+++.|+.|+|||+++..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999976654
No 301
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.22 E-value=0.0022 Score=39.34 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=18.5
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++++|++|+|||+|+..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999988775
No 302
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.22 E-value=0.0021 Score=42.82 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=17.5
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
-.+.++|++||||||++..+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 467889999999999996544
No 303
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.19 E-value=0.0011 Score=47.01 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=16.4
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.+.|+|++|+|||||++-+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHh
Confidence 46799999999999995433
No 304
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.19 E-value=0.0048 Score=36.24 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=17.9
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
.-+++.|++|+|||++.+.+..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999964443
No 305
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.18 E-value=0.0011 Score=47.27 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=24.0
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCcCCC
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHE 56 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~ 56 (76)
...+++++|+.++|||||+.++....+..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~ 31 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVAS 31 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcc
Confidence 35689999999999999999888765544
No 306
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.17 E-value=0.0029 Score=40.36 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.3
Q ss_pred ceeeEEEECCCCCcchhhhhhhhh
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~ 51 (76)
..++|+|+|.+|+||||+..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999977654
No 307
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.17 E-value=0.0026 Score=38.32 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.5
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|++.|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999976653
No 308
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.17 E-value=0.0025 Score=38.26 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=17.8
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
+|+|+|.+|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999865543
No 309
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.15 E-value=0.0026 Score=44.36 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.9
Q ss_pred ceeeEEEECCCCCcchhhhhhhhh
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~ 51 (76)
..++|+++|..++|||||+.+++.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~ 29 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIY 29 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999999875
No 310
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.15 E-value=0.0023 Score=46.22 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.1
Q ss_pred eeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRGQFH 55 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~~f~ 55 (76)
..+|+++|+.++|||||+.+++...+.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~ 31 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA 31 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc
Confidence 578999999999999999998865543
No 311
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.12 E-value=0.0027 Score=41.28 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=18.9
Q ss_pred eEEEECCCCCcchhhhhhhhhC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRG 52 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~ 52 (76)
-++|.|+.|+|||+|++++...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 4788999999999999887753
No 312
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.11 E-value=0.0053 Score=38.78 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.4
Q ss_pred cccceeeEEEECCCCCcchhhhhhhhh
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~~ 51 (76)
.......+++.|..||||||++.++..
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHH
Confidence 344567889999999999999988774
No 313
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.11 E-value=0.0032 Score=40.01 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=18.2
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..+.|+|++|+||||+++.+..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999965543
No 314
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.11 E-value=0.0027 Score=40.94 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=16.7
Q ss_pred EEEECCCCCcchhhhhhhh
Q psy1355 32 LVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~ 50 (76)
++++|++|+|||+|++.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVA 94 (278)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHH
Confidence 7999999999999996554
No 315
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.11 E-value=0.0031 Score=43.03 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.4
Q ss_pred ccceeeEEEECCCCCcchhhhhhh
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRF 49 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~ 49 (76)
.....||+|+|.+++||||+++++
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHH
Confidence 345789999999999999999764
No 316
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.11 E-value=0.0037 Score=44.53 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=18.5
Q ss_pred eEEEECCCCCcchhhhhhhhhCcC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f 54 (76)
.+.++|++|+|||||++ .+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk-~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVK-ILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHH-HHHTSS
T ss_pred EEEEECCCCCCHHHHHH-HHhCCC
Confidence 47899999999999995 555554
No 317
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.10 E-value=0.0029 Score=38.10 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.1
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
..|+++|.+|+||||+.+.+.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 468899999999999997655
No 318
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.09 E-value=0.0031 Score=40.45 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=18.5
Q ss_pred eeeEEEECCCCCcchhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~ 50 (76)
...|.|+|++|+||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999996554
No 319
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.09 E-value=0.0034 Score=38.61 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=18.9
Q ss_pred eeeEEEECCCCCcchhhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~ 51 (76)
...+.++|.+|+||||++..+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999965543
No 320
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.09 E-value=0.0033 Score=42.38 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=18.4
Q ss_pred eeeEEEECCCCCcchhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~ 50 (76)
.+-+.|+|++|+||||+++.+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4678899999999999996543
No 321
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.09 E-value=0.0022 Score=45.67 Aligned_cols=25 Identities=12% Similarity=0.367 Sum_probs=22.0
Q ss_pred ccceeeEEEECCCCCcchhhhhhhh
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~ 50 (76)
.....+|+++|.+++|||||+.+++
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHH
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHH
Confidence 3457899999999999999999885
No 322
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.08 E-value=0.0029 Score=38.65 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=18.1
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
.-+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999865543
No 323
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.08 E-value=0.0037 Score=42.55 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=21.7
Q ss_pred cccceeeEEEECCCCCcchhhhhhhh
Q psy1355 25 AKICQYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 25 ~~~~~~kivllG~~~vGKtsl~~~~~ 50 (76)
......|++++|.+++||||+++++-
T Consensus 5 ~~~~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 5 SGIHIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp CCCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCceeEEEECCCCCcHHHHHHHHH
Confidence 34567899999999999999997643
No 324
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.07 E-value=0.0024 Score=41.46 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=17.7
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++|+|++|+|||+|+..++.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999976654
No 325
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.06 E-value=0.0027 Score=44.24 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=22.1
Q ss_pred cceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVRGQ 53 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~~~ 53 (76)
...++|+++|.+|+||||+.+++....
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999998877543
No 326
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.06 E-value=0.0035 Score=41.45 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=18.8
Q ss_pred ceeeEEEECCCCCcchhhhhhhh
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~ 50 (76)
..+.|.|+|++|+|||||++.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999986443
No 327
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.05 E-value=0.0034 Score=42.21 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.6
Q ss_pred ceeeEEEECCCCCcchhhhhhhhh
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~ 51 (76)
..++|+++|..|+|||||+.++..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988764
No 328
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.05 E-value=0.0029 Score=39.25 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=18.5
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
++|+|.|..|+||||+...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999976654
No 329
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.02 E-value=0.004 Score=37.91 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=18.7
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|++.|..|+||||+...+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999976654
No 330
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.02 E-value=0.0036 Score=38.08 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=18.7
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|+|+|.+|+||||+.+.+..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999976554
No 331
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.02 E-value=0.0036 Score=37.81 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.1
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.|++.|..|+||||+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999976654
No 332
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.01 E-value=0.0031 Score=41.92 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=17.5
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
-.+.++|++|+||||++..+.
T Consensus 101 ~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 467899999999999996544
No 333
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.01 E-value=0.0027 Score=41.26 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=18.5
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++|.|+.|+|||+|+.++..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999987765
No 334
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.01 E-value=0.0038 Score=42.30 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=17.2
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.++|+|++|+|||||++.++
T Consensus 177 ~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999996444
No 335
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.00 E-value=0.0031 Score=42.45 Aligned_cols=22 Identities=18% Similarity=0.537 Sum_probs=18.3
Q ss_pred eeeEEEECCCCCcchhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~ 50 (76)
-..+.++|++|+||||++..+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999996554
No 336
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.00 E-value=0.0035 Score=42.16 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=18.9
Q ss_pred eeeEEEECCCCCcchhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~ 50 (76)
-..+.++|++|+|||||++.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3568899999999999998765
No 337
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.99 E-value=0.0033 Score=39.36 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=18.9
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|+|+|..|+||||+.+++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999976653
No 338
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.98 E-value=0.0033 Score=41.85 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=16.9
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.++++|++|+|||||++-+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 47899999999999996544
No 339
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.98 E-value=0.0034 Score=39.83 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=17.2
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
-+++.|++|+|||++++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 48999999999999996554
No 340
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.98 E-value=0.0033 Score=40.98 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=16.7
Q ss_pred EEEECCCCCcchhhhhhhh
Q psy1355 32 LVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~ 50 (76)
++++|++|+|||+|++.+.
T Consensus 47 vlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp EEEESSTTSCHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 8999999999999996544
No 341
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=95.98 E-value=0.0053 Score=44.94 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=23.0
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhh
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~ 51 (76)
.....+|+++|..++|||||+.+++.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~ 34 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILY 34 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999873
No 342
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.96 E-value=0.0052 Score=42.70 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.1
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.+.++|++|+|||||++.++.
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 788999999999999975553
No 343
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.96 E-value=0.0041 Score=37.84 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=18.9
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|+|.|..|+||||+...+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999976665
No 344
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.95 E-value=0.0032 Score=37.86 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.3
Q ss_pred eEEEECCCCCcchhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLR 48 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~ 48 (76)
-.+|+|++|+|||+|+.-
T Consensus 28 ~~~i~G~NGsGKStll~a 45 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDA 45 (182)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 467899999999999853
No 345
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.95 E-value=0.0043 Score=36.71 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=18.0
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
+|++.|..|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999966554
No 346
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.94 E-value=0.0031 Score=41.40 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=18.1
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++|.|++|+|||+|++.+..
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999976654
No 347
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.94 E-value=0.0047 Score=37.05 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.3
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|++.|..|+||||+...+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999876543
No 348
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.93 E-value=0.0036 Score=42.56 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.2
Q ss_pred cceeeEEEECCCCCcchhhhhh
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLR 48 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~ 48 (76)
...+|++|+|...+||||++++
T Consensus 3 ~~~~klLLLG~geSGKSTi~KQ 24 (340)
T 4fid_A 3 AKPITVMLLGSGESGKSTIAKQ 24 (340)
T ss_dssp -CCEEEEEEECTTSSHHHHHHH
T ss_pred CCcceEEEECCCCCcHHHHHHH
Confidence 3578999999999999999965
No 349
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.93 E-value=0.004 Score=38.43 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=18.4
Q ss_pred eeeEEEECCCCCcchhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~ 50 (76)
...+.++|++|+||||++..+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999996554
No 350
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.92 E-value=0.0031 Score=39.27 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=18.6
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|+|+|.+|+||||+..++..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999976553
No 351
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.92 E-value=0.0043 Score=38.58 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=18.8
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|+|+|..|+||||+...+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999976554
No 352
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.91 E-value=0.0038 Score=40.16 Aligned_cols=20 Identities=15% Similarity=0.464 Sum_probs=17.1
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
-++|+|++|+|||||...+.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 46899999999999987665
No 353
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=95.91 E-value=0.0036 Score=44.58 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=22.6
Q ss_pred cceeeEEEECCCCCcchhhhhhhhh
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~ 51 (76)
...++|+++|..++|||||+.+++.
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~ 35 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLL 35 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCChHHHHHHHHHh
Confidence 4578999999999999999999885
No 354
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=95.90 E-value=0.0047 Score=41.76 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=19.9
Q ss_pred ccceeeEEEECCCCCcchhhhhh
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLR 48 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~ 48 (76)
....+|++++|...+||||++++
T Consensus 4 ~~~~~klLlLG~geSGKSTi~KQ 26 (327)
T 3ohm_A 4 ARRELKLLLLGTGESGKSTFIKQ 26 (327)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHH
T ss_pred hcccceEEEEcCCCccHHHHHHH
Confidence 34579999999999999999976
No 355
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.89 E-value=0.0062 Score=42.11 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=17.6
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
-+.|+|++|+|||+|+++++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47789999999999998775
No 356
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.87 E-value=0.0045 Score=39.05 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=18.5
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
+.|+++|++|+||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999876654
No 357
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.86 E-value=0.0038 Score=42.45 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=17.1
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.++++|++|+||||+++-++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999996443
No 358
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.85 E-value=0.0035 Score=40.50 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.0
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++|+|++|+|||+|+..++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 477899999999999987764
No 359
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.85 E-value=0.0043 Score=39.06 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=17.5
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+++.|++|+|||++++.+..
T Consensus 41 ~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999965543
No 360
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.83 E-value=0.0036 Score=41.58 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=18.5
Q ss_pred eEEEECCCCCcchhhhhhhhhC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRG 52 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~ 52 (76)
-++|+|.+|+|||||++.+...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999877743
No 361
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.82 E-value=0.0038 Score=38.82 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=17.6
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++++|++|+|||+|+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999877654
No 362
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.82 E-value=0.0045 Score=40.89 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=18.2
Q ss_pred eeeEEEECCCCCcchhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~ 50 (76)
-..+.|+|++|+|||||++.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3568899999999999996444
No 363
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.81 E-value=0.0041 Score=40.77 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=17.6
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+++.|++|+|||+|++.+..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999976553
No 364
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.81 E-value=0.005 Score=38.63 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=18.0
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.|+|.|..|+||||+...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999976553
No 365
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.81 E-value=0.0013 Score=44.14 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=18.5
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
-.++++|++|+|||||++.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 3688999999999999976553
No 366
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.80 E-value=0.0044 Score=39.71 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.2
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
--+++.|++|+|||++++.+..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3489999999999999976553
No 367
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.79 E-value=0.0046 Score=37.37 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=18.9
Q ss_pred eeeEEEECCCCCcchhhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~ 51 (76)
...|+++|..|+||||+...+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999966554
No 368
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.78 E-value=0.0047 Score=37.28 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=18.5
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|+++|..|+||||+...+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999976553
No 369
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.75 E-value=0.0051 Score=37.99 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=18.4
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..+.++|.+|+|||||+.+++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999977664
No 370
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.75 E-value=0.0057 Score=37.10 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=19.4
Q ss_pred eeeEEEECCCCCcchhhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~ 51 (76)
...|.|+|.+|+||||+...+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999976654
No 371
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.74 E-value=0.0027 Score=44.10 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.1
Q ss_pred eEEEECCCCCcchhhhhhhhhC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRG 52 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~ 52 (76)
++.|+|++++|||||++.++..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4789999999999999877754
No 372
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=95.74 E-value=0.0037 Score=43.68 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.8
Q ss_pred cceeeEEEECCCCCcchhhhhhhhh
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~ 51 (76)
...++|+++|..++|||||+.+++.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 3468999999999999999998863
No 373
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.73 E-value=0.0048 Score=39.82 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=18.2
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
--+++.|++|+|||++++.+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4588999999999999965553
No 374
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.73 E-value=0.005 Score=41.92 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=17.0
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.++++|++|+||||+++.++
T Consensus 138 ~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999996544
No 375
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.72 E-value=0.0047 Score=41.86 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=17.6
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
++.++|++|+|||||++.++.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g 93 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICN 93 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999965554
No 376
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.72 E-value=0.0065 Score=36.74 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=18.2
Q ss_pred eeeEEEECCCCCcchhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~ 50 (76)
...++++|.+|+||||+.+.+.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 3568899999999999996554
No 377
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.71 E-value=0.0017 Score=39.89 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=17.2
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999997654
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.70 E-value=0.0067 Score=36.46 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.0
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..++++|.+|+||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999965543
No 379
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.70 E-value=0.0051 Score=40.64 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=18.6
Q ss_pred eEEEECCCCCcchhhhhhhhhC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRG 52 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~ 52 (76)
-++|.|++|+|||++++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999766643
No 380
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.0041 Score=43.70 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=16.8
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.+.|+|++|+|||||++-++
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~ 159 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLC 159 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999995433
No 381
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.70 E-value=0.0049 Score=40.01 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=17.9
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
-.|+|+|.+|+||||+.+.+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999996554
No 382
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=95.69 E-value=0.006 Score=41.44 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=19.9
Q ss_pred ccceeeEEEECCCCCcchhhhhhh
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRF 49 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~ 49 (76)
....+|++++|.+.+||||+++++
T Consensus 29 ~~~~~klLlLG~geSGKST~~KQm 52 (353)
T 1cip_A 29 AAREVKLLLLGAGESGKSTIVKQM 52 (353)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHH
T ss_pred hcccceEEEEcCCCCCchhHHHHH
Confidence 455899999999999999999763
No 383
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.69 E-value=0.0057 Score=36.24 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=18.2
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999976553
No 384
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.69 E-value=0.0057 Score=36.60 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=18.5
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|+|.|..|+||||+...+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999876653
No 385
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.69 E-value=0.0049 Score=41.34 Aligned_cols=23 Identities=13% Similarity=0.387 Sum_probs=18.2
Q ss_pred eEEEECCCCCcchhhhhhhhhCcC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f 54 (76)
.++++|++|+|||||++-+. +..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~-g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIM-EFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGG-GGS
T ss_pred EEEEECCCCCCHHHHHHHHh-CCC
Confidence 58899999999999996444 443
No 386
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.69 E-value=0.006 Score=36.60 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=17.9
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.|++.|..|+||||+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999976654
No 387
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.67 E-value=0.0053 Score=37.54 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=18.5
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|+|.|..|+||||+...+..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999976553
No 388
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.67 E-value=0.0052 Score=41.99 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=17.5
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
-.+.++|++|+||||++..+.
T Consensus 158 ~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 467899999999999996544
No 389
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=95.66 E-value=0.0053 Score=44.94 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=22.3
Q ss_pred cceeeEEEECCCCCcchhhhhhhhh
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~ 51 (76)
....+|+++|..++|||||+.+++.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999884
No 390
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.64 E-value=0.005 Score=39.40 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=19.0
Q ss_pred eeeEEEECCCCCcchhhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~ 51 (76)
...++++|.+|+||||+.+.+..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999976553
No 391
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.0078 Score=43.67 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=18.3
Q ss_pred eEEEECCCCCcchhhhhhhhhCcC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f 54 (76)
.+.|+|++|+|||||++ .+.+..
T Consensus 105 i~~LvGpNGaGKSTLLk-iL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALK-ILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHH-HHHTSS
T ss_pred EEEEECCCCChHHHHHH-HHhcCC
Confidence 47899999999999995 555544
No 392
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.62 E-value=0.008 Score=43.53 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=18.4
Q ss_pred eEEEECCCCCcchhhhhhhhhCcC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f 54 (76)
.+.|+|++|+|||||++ .+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlk-iL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVK-ILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHH-HHTTSS
T ss_pred EEEEECCCCChHHHHHH-HHhCCC
Confidence 47899999999999995 555544
No 393
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.62 E-value=0.01 Score=37.74 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=18.2
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
.-+++.|++|+|||++++.+..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHH
Confidence 4588999999999999965554
No 394
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.61 E-value=0.0054 Score=43.83 Aligned_cols=21 Identities=19% Similarity=0.589 Sum_probs=17.6
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
..+.|+|.+|+|||||+..+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHH
Confidence 457899999999999996544
No 395
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.61 E-value=0.0059 Score=39.19 Aligned_cols=22 Identities=23% Similarity=0.638 Sum_probs=18.0
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
.-+++.|++|+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999965543
No 396
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.61 E-value=0.0076 Score=43.05 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=18.0
Q ss_pred eEEEECCCCCcchhhhhhhhhCcC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f 54 (76)
.+.|+|++|+|||||++ .+.+..
T Consensus 27 i~gLiGpNGaGKSTLlk-iL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLK-ILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHH-HHTTSS
T ss_pred EEEEECCCCCcHHHHHH-HHhcCC
Confidence 36799999999999995 554544
No 397
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.59 E-value=0.007 Score=37.68 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=19.0
Q ss_pred eeeEEEECCCCCcchhhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~ 51 (76)
..+|+|+|..|+||||+...+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999866543
No 398
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.59 E-value=0.0059 Score=37.33 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=18.6
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|+|.|..|+||||+...+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999976653
No 399
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.57 E-value=0.0049 Score=40.55 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.4
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
--+++.|++|+|||++++.+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999976654
No 400
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.55 E-value=0.0059 Score=40.18 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=17.5
Q ss_pred EEEECCCCCcchhhhhhhhh
Q psy1355 32 LVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~ 51 (76)
+++.|++|+|||++++.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999976554
No 401
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.53 E-value=0.0061 Score=36.66 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=17.8
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.|+|+|.+|+||||+...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999866553
No 402
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.53 E-value=0.0057 Score=39.52 Aligned_cols=21 Identities=19% Similarity=0.550 Sum_probs=17.3
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
.-+++.|++|+|||++++.+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999999996433
No 403
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.53 E-value=0.0065 Score=38.90 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=18.6
Q ss_pred eeeEEEECCCCCcchhhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~ 51 (76)
..-+++.|++|+|||++++.+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34588999999999999966554
No 404
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.52 E-value=0.0066 Score=36.27 Aligned_cols=21 Identities=19% Similarity=0.157 Sum_probs=14.1
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
..|++.|..|+||||+.+.+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999997654
No 405
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.52 E-value=0.0083 Score=37.13 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=18.7
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
+.|+|.|.+|+||||+.+.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999976654
No 406
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.50 E-value=0.0044 Score=44.71 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=18.2
Q ss_pred eEEEECCCCCcchhhhhhhhhCc
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQ 53 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~ 53 (76)
.++|+|++|+|||||++-+. +.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~-Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALS-GV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHH-SC
T ss_pred eEEEECCCCChHHHHHHHHh-CC
Confidence 48999999999999996554 44
No 407
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.45 E-value=0.0058 Score=43.09 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=17.0
Q ss_pred eEEEECCCCCcchhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRF 49 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~ 49 (76)
.+.|+|++|+|||||++.|
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999999876
No 408
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.44 E-value=0.01 Score=42.36 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=17.6
Q ss_pred EEEECCCCCcchhhhhhhhhCcC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f 54 (76)
+.|+|++|+|||||++ .+.+..
T Consensus 297 ~~i~G~nGsGKSTLl~-~l~Gl~ 318 (538)
T 3ozx_A 297 IGILGPNGIGKTTFAR-ILVGEI 318 (538)
T ss_dssp EEEECCTTSSHHHHHH-HHTTSS
T ss_pred EEEECCCCCCHHHHHH-HHhCCC
Confidence 6799999999999995 554543
No 409
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.37 E-value=0.0094 Score=38.12 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.0
Q ss_pred eeeEEEECCCCCcchhhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~ 51 (76)
...|+|.|..|+||||++..+..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999965543
No 410
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.37 E-value=0.0089 Score=38.56 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=18.7
Q ss_pred eeeEEEECCCCCcchhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~ 50 (76)
.+.+++.|++|+||||+.+.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999996554
No 411
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.36 E-value=0.0098 Score=37.87 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.7
Q ss_pred ceeeEEEECCCCCcchhhhhhhhh
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~ 51 (76)
..+.|.|.|.+|+||||+...+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357799999999999999965543
No 412
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.36 E-value=0.0082 Score=37.16 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=17.6
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
..++++|.+|+||||+.+.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999996544
No 413
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.35 E-value=0.011 Score=37.89 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=20.1
Q ss_pred eeeEEEECCCCCcchhhhhhhhhC
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRG 52 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~ 52 (76)
-..++++|++|+|||+|...+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999877754
No 414
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.34 E-value=0.0081 Score=38.76 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=17.9
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
--++++|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3588999999999999965443
No 415
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.34 E-value=0.0078 Score=39.39 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=17.4
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+++.|++|+|||+|++.+..
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHH
Confidence 488999999999999965543
No 416
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.34 E-value=0.012 Score=42.01 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=17.9
Q ss_pred eEEEECCCCCcchhhhhhhhhCcC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f 54 (76)
.+.|+|++|+|||||++ .+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk-~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVK-MLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHH-HHHTSS
T ss_pred EEEEECCCCCCHHHHHH-HHhCCC
Confidence 36799999999999995 444543
No 417
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.33 E-value=0.0081 Score=39.40 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=17.9
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+++.|++|+|||++++.+..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 589999999999999976553
No 418
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=95.33 E-value=0.0077 Score=45.05 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=23.2
Q ss_pred ccceeeEEEECCCCCcchhhhhhhhhC
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFVRG 52 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~~~ 52 (76)
.....||+++|..++|||||+.+++..
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHh
Confidence 345789999999999999999988753
No 419
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.31 E-value=0.018 Score=37.57 Aligned_cols=23 Identities=43% Similarity=0.450 Sum_probs=19.5
Q ss_pred ceeeEEEECCCCCcchhhhhhhh
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~ 50 (76)
..+.|+|.|.+|+||||+...+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999997655
No 420
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.30 E-value=0.01 Score=38.46 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=18.7
Q ss_pred eeeEEEECCCCCcchhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~ 50 (76)
.+++++.|++|||||+++.+..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHH
Confidence 6899999999999999975433
No 421
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.30 E-value=0.0074 Score=39.90 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.1
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++|.|++|+|||++++.+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999976654
No 422
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.29 E-value=0.0088 Score=38.67 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=18.8
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|+++|.+|+||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999977665
No 423
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.29 E-value=0.0074 Score=39.91 Aligned_cols=21 Identities=14% Similarity=0.545 Sum_probs=18.1
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+++.|++|+|||++++.+..
T Consensus 72 ~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999976654
No 424
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.27 E-value=0.0083 Score=41.67 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=17.4
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++|+|++|+||||+++-++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999965543
No 425
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.26 E-value=0.011 Score=37.51 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=19.0
Q ss_pred eeeEEEECCCCCcchhhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~ 51 (76)
-..|++.|..|+||||++.++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35688999999999999976554
No 426
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.26 E-value=0.0097 Score=41.28 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.5
Q ss_pred ccceeeEEEECCCCCcchhhhhh
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLR 48 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~ 48 (76)
....+|++|+|...+||||++++
T Consensus 37 ~~~~~klLLLG~geSGKSTi~KQ 59 (402)
T 1azs_C 37 YRATHRLLLLGAGESGKSTIVKQ 59 (402)
T ss_dssp CTTEEEEEEEESTTSSHHHHHHH
T ss_pred hhccceEEEecCCCCchhhHHHH
Confidence 45579999999999999999976
No 427
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.24 E-value=0.013 Score=42.49 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=17.6
Q ss_pred EEEECCCCCcchhhhhhhhhCcC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f 54 (76)
+.|+|++|+|||||++ .+.+..
T Consensus 385 ~~i~G~NGsGKSTLlk-~l~Gl~ 406 (607)
T 3bk7_A 385 IGIVGPNGIGKTTFVK-MLAGVE 406 (607)
T ss_dssp EEEECCTTSSHHHHHH-HHHTSS
T ss_pred EEEECCCCCCHHHHHH-HHhcCC
Confidence 6799999999999995 555543
No 428
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.24 E-value=0.0094 Score=38.28 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=18.5
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
..|+++|.+|+||||+...+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999976553
No 429
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.23 E-value=0.0085 Score=42.59 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=17.1
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.++|+|++|+||||+++-++
T Consensus 262 ~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999996544
No 430
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.21 E-value=0.009 Score=39.51 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=17.4
Q ss_pred EEEECCCCCcchhhhhhhhh
Q psy1355 32 LVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~ 51 (76)
+++.|++|+|||++++.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999976554
No 431
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.20 E-value=0.011 Score=40.39 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=18.0
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-|+|+|++|+|||+|...+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999976664
No 432
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.20 E-value=0.008 Score=40.54 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.2
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+.|+|++|+|||+|++.++.
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999987774
No 433
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.18 E-value=0.0096 Score=38.92 Aligned_cols=20 Identities=25% Similarity=0.617 Sum_probs=17.3
Q ss_pred EEEECCCCCcchhhhhhhhh
Q psy1355 32 LVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~ 51 (76)
+++.|++|+|||++++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999976553
No 434
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.17 E-value=0.0078 Score=39.05 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.2
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
.-+++.|++|+|||++++.+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999976543
No 435
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.14 E-value=0.007 Score=35.50 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=17.1
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
.-+++.|++|+|||++.+.+.
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGC
T ss_pred CcEEEECCCCccHHHHHHHHH
Confidence 358999999999999985443
No 436
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.09 E-value=0.011 Score=39.57 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.0
Q ss_pred eeeEEEECCCCCcchhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~ 50 (76)
...++++|.+|+||||++..+.
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 4678899999999999998765
No 437
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.09 E-value=0.011 Score=39.67 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=18.2
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
.-+++.|++|+|||++++.+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999965543
No 438
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.09 E-value=0.0095 Score=43.15 Aligned_cols=16 Identities=44% Similarity=0.557 Sum_probs=14.7
Q ss_pred EEEECCCCCcchhhhh
Q psy1355 32 LVLLGESAVGKSSLVL 47 (76)
Q Consensus 32 ivllG~~~vGKtsl~~ 47 (76)
+.|+|++|+|||||++
T Consensus 351 vaIiGpnGsGKSTLl~ 366 (670)
T 3ux8_A 351 VAVTGVSGSGKSTLVN 366 (670)
T ss_dssp EEEECSTTSSHHHHHT
T ss_pred EEEEeeCCCCHHHHHH
Confidence 6899999999999985
No 439
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.07 E-value=0.012 Score=40.01 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=18.0
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++|+|++|+|||+|..++..
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 367899999999999987764
No 440
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.06 E-value=0.011 Score=40.61 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.6
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
.-|+++|.+|+||||+.+++..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999987664
No 441
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.05 E-value=0.018 Score=41.74 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.3
Q ss_pred ceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVRGQ 53 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~~~ 53 (76)
....|.|+|.+++|||+|+++++...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 35778999999999999999887654
No 442
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.03 E-value=0.0086 Score=39.19 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=17.8
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+++.|++|+|||++++.+..
T Consensus 47 ~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 389999999999999966554
No 443
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.03 E-value=0.011 Score=38.99 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=18.2
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
--+++.|++|+|||+|++.+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999965553
No 444
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.03 E-value=0.01 Score=38.87 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=16.1
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
-+++.|++|+|||+|++.+.
T Consensus 38 ~lLl~GppGtGKT~la~aiA 57 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVF 57 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46677999999999996544
No 445
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.00 E-value=0.011 Score=39.18 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.3
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
--+++.|++|+|||+|++.+..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 3588999999999999976654
No 446
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=95.00 E-value=0.012 Score=42.71 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=17.6
Q ss_pred ceeeEEEECCCCCcchhhhhhhhh
Q psy1355 28 CQYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 28 ~~~kivllG~~~vGKtsl~~~~~~ 51 (76)
...+++++|..++|||||+.+++.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~ 26 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQ 26 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999875
No 447
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.99 E-value=0.012 Score=41.04 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=17.9
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
-.++++|++|||||++++.+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999965543
No 448
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.96 E-value=0.016 Score=42.06 Aligned_cols=22 Identities=36% Similarity=0.818 Sum_probs=17.7
Q ss_pred EEEECCCCCcchhhhhhhhhCcC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f 54 (76)
+.++|++|+|||||++ .+.+..
T Consensus 381 v~iiG~NGsGKSTLlk-~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIK-LLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHH-HHHTSS
T ss_pred EEEECCCCCcHHHHHH-HHhcCC
Confidence 5899999999999995 554543
No 449
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.95 E-value=0.013 Score=36.39 Aligned_cols=21 Identities=24% Similarity=0.599 Sum_probs=17.7
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+++.|++|+|||+|+.+++.
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 367889999999999988763
No 450
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=94.94 E-value=0.0097 Score=40.51 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=19.1
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
+++++|..++|||||+.+++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999887
No 451
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.93 E-value=0.015 Score=36.59 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=19.6
Q ss_pred ccceeeEEEECCCCCcchhhhhhhh
Q psy1355 26 KICQYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 26 ~~~~~kivllG~~~vGKtsl~~~~~ 50 (76)
+.....|.|+|..|+||||+...+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 3445679999999999999986544
No 452
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.91 E-value=0.013 Score=41.18 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=18.1
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++|.|++|+|||+|+..+..
T Consensus 149 ~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 149 WVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEcCCCCCHHHHHHHHHh
Confidence 478999999999999987764
No 453
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=94.90 E-value=0.014 Score=42.92 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=22.1
Q ss_pred cceeeEEEECCCCCcchhhhhhhhh
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~ 51 (76)
....+|+++|..++|||||+.+++.
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999864
No 454
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.90 E-value=0.015 Score=34.52 Aligned_cols=23 Identities=39% Similarity=0.385 Sum_probs=18.3
Q ss_pred eeeEEEECCCCCcchhhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~ 51 (76)
.-.|+|.|..|+||||+.+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999965543
No 455
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=94.87 E-value=0.016 Score=42.06 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=20.0
Q ss_pred cceeeEEEECCCCCcchhhhhhhhh
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~ 51 (76)
....+++++|..++|||||+.+++.
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~ 28 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLE 28 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHh
Confidence 3467999999999999999999875
No 456
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.86 E-value=0.005 Score=39.16 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=16.9
Q ss_pred EEEECCCCCcchhhhhhhhh
Q psy1355 32 LVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~ 51 (76)
+++.|++|+|||+|++.+..
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78899999999999965543
No 457
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.84 E-value=0.013 Score=39.23 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=18.2
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
.-++|.|++|+|||+|++.+..
T Consensus 118 ~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999966553
No 458
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.84 E-value=0.012 Score=38.97 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=17.4
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
-.++++|++|+||||++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 367889999999999986544
No 459
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.84 E-value=0.013 Score=40.62 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=17.0
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
-+++.|++|+|||+|++.+.
T Consensus 132 ~lll~Gp~G~GKTtLa~aia 151 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIG 151 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999999996544
No 460
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.84 E-value=0.014 Score=38.69 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=17.5
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
-.+++.|++|+|||+|+..+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia 173 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMA 173 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999985443
No 461
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.83 E-value=0.014 Score=39.49 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=17.9
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.++|+|++|+|||+|...+..
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999876553
No 462
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.83 E-value=0.013 Score=38.49 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=15.5
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
+.|.|.|++|+||||+.+.+..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999976654
No 463
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.79 E-value=0.014 Score=38.86 Aligned_cols=21 Identities=14% Similarity=0.455 Sum_probs=17.5
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
-.++++|++|+||||++..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 457899999999999997654
No 464
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.78 E-value=0.014 Score=39.43 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=17.8
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++|+|++|+|||+|..++..
T Consensus 12 ~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 467899999999999977664
No 465
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.78 E-value=0.021 Score=40.29 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=18.8
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
--|.|+|.+|+|||+|..++.+
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4467999999999999988774
No 466
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.78 E-value=0.014 Score=39.19 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=17.6
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++|.|++|+|||+|++.+..
T Consensus 86 ~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999965553
No 467
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.75 E-value=0.014 Score=34.75 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=14.5
Q ss_pred EEEECCCCCcchhhhhh
Q psy1355 32 LVLLGESAVGKSSLVLR 48 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~ 48 (76)
.+++|+.|+|||+|+.-
T Consensus 26 ~~I~G~NGsGKStil~A 42 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDA 42 (149)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 47889999999999843
No 468
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.74 E-value=0.014 Score=39.57 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=20.5
Q ss_pred eeeEEEECCCCCcchhhhhhhhhC
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRG 52 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~ 52 (76)
..+++++|.+++|||||++.++..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhh
Confidence 357999999999999999887753
No 469
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.73 E-value=0.014 Score=40.63 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=17.6
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+++.|++|+|||++++.+..
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999965543
No 470
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.71 E-value=0.015 Score=39.57 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=18.3
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
.-|+|+|++|+|||+|..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3588999999999999976554
No 471
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.70 E-value=0.011 Score=39.36 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=16.8
Q ss_pred eEEE--ECCCCCcchhhhhhhhh
Q psy1355 31 KLVL--LGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivl--lG~~~vGKtsl~~~~~~ 51 (76)
-++| .|++|+|||+|++.+..
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHH
Confidence 3555 69999999999977664
No 472
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.67 E-value=0.016 Score=38.09 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=17.7
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+++.|+.|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999976654
No 473
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.67 E-value=0.023 Score=37.41 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=18.2
Q ss_pred eeeEEEECCCCCcchhhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~ 51 (76)
..-+++.|++|+|||++++.+..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHHHH
Confidence 34588999999999999865443
No 474
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.66 E-value=0.017 Score=36.33 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcchhhhhhhhhC
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVRG 52 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~~ 52 (76)
.-+++.|++|+|||++...++..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 45889999999999999877754
No 475
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.65 E-value=0.014 Score=42.24 Aligned_cols=15 Identities=60% Similarity=0.705 Sum_probs=14.0
Q ss_pred EEEECCCCCcchhhh
Q psy1355 32 LVLLGESAVGKSSLV 46 (76)
Q Consensus 32 ivllG~~~vGKtsl~ 46 (76)
+.|+|++|+|||||+
T Consensus 47 ~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 47 VVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHh
Confidence 689999999999996
No 476
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.64 E-value=0.016 Score=39.13 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=18.4
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
.-++|.|++|+|||+|++.+..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999976553
No 477
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.62 E-value=0.015 Score=41.28 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=16.6
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
-++++|++|+|||+|++.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia 129 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIA 129 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999996443
No 478
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.62 E-value=0.017 Score=38.56 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=17.6
Q ss_pred eeEEEECCCCCcchhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~ 50 (76)
.-+++.|++|+|||++.+.+.
T Consensus 52 ~~vll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999999996544
No 479
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.60 E-value=0.012 Score=38.60 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=17.7
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+++.|++|+|||+|++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999965543
No 480
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.013 Score=40.33 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.9
Q ss_pred eeeEEEECCCCCcchhhhhhhhhC
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRG 52 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~ 52 (76)
...|.++|.++||||||++.++..
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~ 95 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGT 95 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSB
T ss_pred CCeEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999887753
No 481
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.56 E-value=0.017 Score=39.63 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=17.0
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.++++|++|+|||||++.+.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999996544
No 482
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.53 E-value=0.015 Score=40.95 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=18.2
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
.+.|+|++|+|||+|++.++.
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 477899999999999987764
No 483
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.50 E-value=0.021 Score=43.68 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=18.9
Q ss_pred EEEECCCCCcchhhhhhhhhCcC
Q psy1355 32 LVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~~~f 54 (76)
+.|+|++|+|||||++-+..+..
T Consensus 464 v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 464 YGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 67999999999999976665543
No 484
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.50 E-value=0.019 Score=36.94 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=17.9
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+++.|+.|+|||++++.+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 389999999999999976654
No 485
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.45 E-value=0.023 Score=34.48 Aligned_cols=20 Identities=40% Similarity=0.451 Sum_probs=16.9
Q ss_pred eEEEECCCCCcchhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~ 50 (76)
.|.+.|.+|+||||+.+.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la 23 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999986554
No 486
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.44 E-value=0.013 Score=42.11 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=18.2
Q ss_pred eeeEEEECCCCCcchhhhhhhh
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFV 50 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~ 50 (76)
-..++|+|.+|+|||||++.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La 390 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALA 390 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHH
Confidence 3568999999999999996544
No 487
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.39 E-value=0.017 Score=39.08 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=14.7
Q ss_pred EEEECCCCCcchhhhhh
Q psy1355 32 LVLLGESAVGKSSLVLR 48 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~ 48 (76)
.+|+|++|+|||||+.-
T Consensus 26 ~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 55899999999999854
No 488
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.36 E-value=0.021 Score=36.71 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=17.5
Q ss_pred EEEECCCCCcchhhhhhhhh
Q psy1355 32 LVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~ 51 (76)
+++.|+.|+|||++++.+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 89999999999999976654
No 489
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.33 E-value=0.016 Score=39.39 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=20.5
Q ss_pred eeeEEEECCCCCcchhhhhhhhhC
Q psy1355 29 QYKLVLLGESAVGKSSLVLRFVRG 52 (76)
Q Consensus 29 ~~kivllG~~~vGKtsl~~~~~~~ 52 (76)
..+++++|.+++|||||++.++..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhh
Confidence 357999999999999999887753
No 490
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.32 E-value=0.017 Score=44.16 Aligned_cols=23 Identities=26% Similarity=0.687 Sum_probs=18.2
Q ss_pred eEEEECCCCCcchhhhhhhhhCcC
Q psy1355 31 KLVLLGESAVGKSSLVLRFVRGQF 54 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~~~f 54 (76)
.+.|+|++|+|||||++ .+.+..
T Consensus 701 ivaIiGpNGSGKSTLLk-lLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLIN-VLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHH-HHTTSS
T ss_pred EEEEECCCCCCHHHHHH-HHhCCC
Confidence 36799999999999995 555543
No 491
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.31 E-value=0.021 Score=36.60 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=17.4
Q ss_pred EEEECCCCCcchhhhhhhhh
Q psy1355 32 LVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 32 ivllG~~~vGKtsl~~~~~~ 51 (76)
+++.|+.|+|||++++.+..
T Consensus 41 ~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHH
Confidence 89999999999999976654
No 492
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.29 E-value=0.021 Score=40.18 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=17.7
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+++.|++|+|||++++.+..
T Consensus 79 ~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 79 AAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999976554
No 493
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.22 E-value=0.019 Score=39.12 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=17.6
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-+.|.|++|+|||+|+.+++.
T Consensus 63 i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367889999999999987664
No 494
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.22 E-value=0.02 Score=38.60 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcchhhhhhhhhC
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVRG 52 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~~ 52 (76)
.-++++|++|+|||++...++..
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc
Confidence 35899999999999999877764
No 495
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.16 E-value=0.023 Score=40.72 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=17.8
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++++|++|+|||+|++.+..
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHhc
Confidence 589999999999999965544
No 496
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.16 E-value=0.024 Score=37.48 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=18.0
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-++|.|++|+|||+|+.+++.
T Consensus 70 l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 378889999999999988764
No 497
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.14 E-value=0.022 Score=37.65 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=15.9
Q ss_pred eEEEECCCCCcchhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRF 49 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~ 49 (76)
-.+++|++|+|||+|+.-+
T Consensus 26 ~~~i~G~NGsGKS~ll~ai 44 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAI 44 (322)
T ss_dssp EEEEECCTTTCSTHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHH
Confidence 4678999999999999543
No 498
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.10 E-value=0.024 Score=39.22 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.2
Q ss_pred eeEEEECCCCCcchhhhhhhhh
Q psy1355 30 YKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 30 ~kivllG~~~vGKtsl~~~~~~ 51 (76)
--++|.|++|+|||+|++.+..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999976554
No 499
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.10 E-value=0.021 Score=39.84 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=17.6
Q ss_pred eEEEECCCCCcchhhhhhhhh
Q psy1355 31 KLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 31 kivllG~~~vGKtsl~~~~~~ 51 (76)
-|+|+|++|+|||+|..++..
T Consensus 4 ~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHH
Confidence 468899999999999976654
No 500
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=94.10 E-value=0.027 Score=44.22 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=22.3
Q ss_pred cceeeEEEECCCCCcchhhhhhhhh
Q psy1355 27 ICQYKLVLLGESAVGKSSLVLRFVR 51 (76)
Q Consensus 27 ~~~~kivllG~~~vGKtsl~~~~~~ 51 (76)
...++|+++|..++|||||+.+++.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~ 318 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITT 318 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHh
Confidence 3468999999999999999998875
Done!