RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1355
(76 letters)
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 170
Score = 76.8 bits (189), Expect = 9e-20
Identities = 24/37 (64%), Positives = 28/37 (75%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ KLVLLGE+AVGKSS+VLRFV F E +E TIG
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 76.4 bits (189), Expect = 1e-19
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ + + K+ LLG++ VGKSS++ RFV F TIG
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG 40
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution,
protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A*
1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A*
1huq_A* 2hei_A* 1z07_A*
Length = 170
Score = 75.6 bits (187), Expect = 2e-19
Identities = 35/38 (92%), Positives = 38/38 (100%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG 40
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 76.1 bits (188), Expect = 2e-19
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 1 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
M +S++ + + G + I + K+ LLG++ VGKSS+V RFV+ F
Sbjct: 1 MGSSHHHHHHSSGLV------PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISP 54
Query: 61 TIG 63
TIG
Sbjct: 55 TIG 57
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 74.1 bits (183), Expect = 9e-19
Identities = 26/42 (61%), Positives = 29/42 (69%)
Query: 22 QTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K KLVLLG+ GKSSLVLRFV+ QF E+QESTIG
Sbjct: 5 AAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIG 46
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 72.2 bits (178), Expect = 6e-18
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 20 NDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ + ++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 5 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 48
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 71.4 bits (176), Expect = 8e-18
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
++ +K+VLLGE VGK+SLVLR+ +F++ +T+G
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG 40
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 71.2 bits (175), Expect = 2e-17
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 14 GRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
G + ++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 1 GPGMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 50
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 68.0 bits (167), Expect = 3e-16
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q K+V+LG+ A GK+SL F + F + + TIG
Sbjct: 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG 40
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 67.3 bits (165), Expect = 8e-16
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 21 DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ + YK+ L+G+ VGK++ + R + G+F + +T+G
Sbjct: 3 GSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVG 45
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics,
structural genomics consortium, SGC; HET: GDP; 1.90A
{Homo sapiens} SCOP: c.37.1.8
Length = 196
Score = 66.1 bits (162), Expect = 2e-15
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 5 NNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
++ +S+G + Q+ AK + KL + G + VGKS+LV+RF+ +F + T+
Sbjct: 4 HHHHSSGVDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 62
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 65.7 bits (161), Expect = 2e-15
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 4 SNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
S++ + + G + R ++ +K+VL+GES VGK++L+ RF R +F +TIG
Sbjct: 3 SSHHHHHHSSGLVPRGSEDYN---FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG 59
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein;
HET: GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 65.6 bits (160), Expect = 3e-15
Identities = 23/38 (60%), Positives = 27/38 (71%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K YK VLLGES+VGKSS+VLR + FHE +TIG
Sbjct: 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIG 41
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 65.4 bits (160), Expect = 4e-15
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q+KLVL+G+ GK++ V R + G+F + +T+G
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 49
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 64.9 bits (159), Expect = 6e-15
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 1 MANSNNSNSNGRGGRIQRPN--DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 58
M + ++ +S R N Q + K+V+LG VGK+SL +FV G+F E
Sbjct: 1 MHHHHHHSS-------GRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY 53
Query: 59 ESTIG 63
+ T+
Sbjct: 54 DPTVE 58
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP,
structural genomics, SGC, structural genomics
consortium, signaling protein; HET: GDP; 2.15A {Homo
sapiens}
Length = 199
Score = 64.6 bits (158), Expect = 7e-15
Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 1 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
M +S++ + + G + R + ++ + YK+VL G++AVGKSS ++R + +F E +
Sbjct: 1 MGSSHHHHHHSSGL-VPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISA 59
Query: 61 TIG 63
T+G
Sbjct: 60 TLG 62
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 64.2 bits (157), Expect = 8e-15
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
+ I + +L +LG++ GKSSL+ RF+ G + E T
Sbjct: 1 SMRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESE 41
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 63.7 bits (156), Expect = 8e-15
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K+V++G AVGKSS++ R+ +G F + + TIG
Sbjct: 1 GSEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG 39
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 63.0 bits (154), Expect = 3e-14
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 4 SNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
S++ + + G + R + + +K +++G + GKS L+ +F+ +F + TIG
Sbjct: 3 SSHHHHHHSSGLVPRGSIWSD---FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIG 59
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 62.7 bits (153), Expect = 4e-14
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
T K K+++LG+S VGK+SL+ ++V +F ++TIG
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG 42
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 62.2 bits (152), Expect = 4e-14
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K+ +LG +VGKSSL ++FV GQF + + TI
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE 40
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 62.7 bits (153), Expect = 4e-14
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+S VGKS+L+ RF R +F+ +STIG
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 39
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 62.6 bits (153), Expect = 4e-14
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+S VGKS+L+ RF R +F+ +STIG
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 63
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 62.2 bits (152), Expect = 4e-14
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 19 PNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+Q + +K++++G VGKS+L L+F+ +F E E T
Sbjct: 8 GGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 52
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 61.8 bits (151), Expect = 5e-14
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K +++G+ VGKS L+ +F +F TIG
Sbjct: 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG 49
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 61.9 bits (151), Expect = 7e-14
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 4 SNNSNSNGRGGRIQRPNDQTQAKI-CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
S++ + + G + R + + +KLVL+G+++VGK+ +V RF G F E Q STI
Sbjct: 3 SSHHHHHHSSGLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI 62
Query: 63 G 63
G
Sbjct: 63 G 63
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 61.4 bits (150), Expect = 9e-14
Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K+++LG+S VGK+SL+ R+V ++ + ++TIG
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIG 42
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction,
structural genomics, structural genomics consortium,
SGC, protein transport; HET: GDP; 1.50A {Homo sapiens}
SCOP: c.37.1.8 PDB: 1z0a_A*
Length = 191
Score = 61.5 bits (150), Expect = 1e-13
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 13 GGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ +K +++G++ VGKS L+L+F +F + TIG
Sbjct: 5 HHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG 55
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 61.5 bits (150), Expect = 1e-13
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 11 GRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVR--GQFHEYQESTIG 63
+ + K+ ++GE+ VGKS+L+ F +F + T G
Sbjct: 2 AASMVKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSG 56
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 201
Score = 61.1 bits (149), Expect = 1e-13
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 3 NSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
S++ + + G + R + + +K+VL+G + VGK+ LV RF +G F Q +TI
Sbjct: 2 GSSHHHHHHSSGLVPRGSMEDYD--FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI 59
Query: 63 G 63
G
Sbjct: 60 G 60
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 60.6 bits (148), Expect = 1e-13
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+YK+V+LG VGKS+L ++FV G F E + TI
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE 37
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 60.6 bits (148), Expect = 1e-13
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE 37
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 61.3 bits (149), Expect = 2e-13
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+S VGKS+L+ RF + +F+ +STIG
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG 47
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 60.7 bits (148), Expect = 2e-13
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K++++G+S VGK+ L RF G+F + E+TIG
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG 54
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein
transport; HET: GDP; 1.25A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 60.2 bits (147), Expect = 2e-13
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K++LLG+ VGKSSL+ R+V +F TIG
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG 41
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 60.2 bits (147), Expect = 2e-13
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Y++ + G VGKSSLVLRFV+G F E T+
Sbjct: 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 37
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 60.7 bits (148), Expect = 2e-13
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 1 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
M + ++ +S Q D +K++L+GES VGKS+L F Q E
Sbjct: 1 MHHHHHHSSGRENLYFQGQKD------GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEP 54
Query: 61 TIG 63
Sbjct: 55 ENP 57
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 59.9 bits (146), Expect = 3e-13
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 1 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
M + ++ +S Q P + L +LG GKS+L ++F+ +F +
Sbjct: 1 MHHHHHHSSGRENLYFQGPLE--------VNLAILGRRGAGKSALTVKFLTKRFISEYDP 52
Query: 61 TIG 63
+
Sbjct: 53 NLE 55
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 59.5 bits (145), Expect = 4e-13
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K +++G + GKS L+ +F+ +F + TIG
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIG 44
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 59.5 bits (145), Expect = 5e-13
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KLV++G VGKS+L ++F++ F + TI
Sbjct: 9 THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE 43
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 59.5 bits (145), Expect = 5e-13
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 1 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
M + ++ +S Q +YKLV++G VGKS+L ++ ++ F + +
Sbjct: 1 MHHHHHHSSGRENLYFQGMT--------EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP 52
Query: 61 TIG 63
TI
Sbjct: 53 TIE 55
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 59.1 bits (144), Expect = 5e-13
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K++L+GES VGKS+L F Q E
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS 36
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 59.0 bits (144), Expect = 5e-13
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K++++G VGKS+L L+F+ +F E E T
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 38
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 59.6 bits (145), Expect = 5e-13
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K++++GES VGKSSL+LRF F +TIG
Sbjct: 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG 49
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 59.2 bits (144), Expect = 7e-13
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 50
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 59.1 bits (144), Expect = 7e-13
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+YKLV++G VGKS+L ++ ++ F + + TI
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE 38
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 58.7 bits (143), Expect = 8e-13
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+YKLV+LG VGKS+L ++FV+G F E + TI
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE 37
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 59.2 bits (144), Expect = 9e-13
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 20 NDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ Q + +K++++G VGKS+L L+F+ +F E E T
Sbjct: 5 KPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 48
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 58.8 bits (143), Expect = 9e-13
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 2 ANSNNSNSNGRGGRIQRPNDQTQAKICQY--KLVLLGESAVGKSSLVLRFVRGQFHEYQE 59
++ ++ +S+G Q + Y KL+L+G+S VGKS L+LRF + E
Sbjct: 4 SHHHHHHSSGENLYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI 63
Query: 60 STIG 63
STIG
Sbjct: 64 STIG 67
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 58.8 bits (143), Expect = 1e-12
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Y++V+ G VGKSSLVLRFV+G F + TI
Sbjct: 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIE 42
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 57.9 bits (141), Expect = 2e-12
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
YKLV++G+ VGKS+L ++F + F + + TI
Sbjct: 18 TYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE 52
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 58.0 bits (141), Expect = 2e-12
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 4 SNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
S++ + + G + R + + + +++++G VGK+SL+ RF F E +ST+G
Sbjct: 3 SSHHHHHHSSGLVPRGSPRPAD--FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG 60
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 58.1 bits (141), Expect = 2e-12
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G S VGKS L+LRF + STIG
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG 42
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 57.6 bits (140), Expect = 3e-12
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+++G+S VGKSSL+LRF F +TIG
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG 43
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 56.8 bits (138), Expect = 4e-12
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K++L+G+S VGKS L++RFV +F+ +TIG
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG 37
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 56.8 bits (138), Expect = 5e-12
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G S+VGK+S + R+ F ST+G
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG 56
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding,
lipoprotein, membrane, methylation; HET: GNP; 1.80A
{Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 56.9 bits (138), Expect = 6e-12
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K + LG+S VGK+S++ ++ G+F+ +T+G
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVG 45
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 56.9 bits (138), Expect = 6e-12
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+++G S+VGK+S + R+ F ST+G
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG 57
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 56.4 bits (137), Expect = 7e-12
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KL+L+G+S VGK+ ++ RF F+ STIG
Sbjct: 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG 42
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 56.6 bits (137), Expect = 9e-12
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
K++L+G+S VGKS L++RFV +F+ +TIG
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG 54
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 56.1 bits (136), Expect = 1e-11
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K++++G S+VGK+S + R+ F ST+G
Sbjct: 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG 42
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 55.8 bits (135), Expect = 1e-11
Identities = 9/37 (24%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEY--QESTIG 63
+ KL+++G + GK++L+ + ++ + + Q +T+G
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVG 38
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2iez_A*
Length = 217
Score = 56.2 bits (136), Expect = 1e-11
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 3 NSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
S++ + + G + R + KL+ LG+S VGK++ + R+ +F+ +T+
Sbjct: 2 GSSHHHHHHSSGLVPRGSGDYDY---LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV 58
Query: 63 G 63
G
Sbjct: 59 G 59
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 54.9 bits (133), Expect = 2e-11
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
Y++VLLG+ VGK+SL F Q + E
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG 37
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 55.8 bits (134), Expect = 4e-11
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 17 QRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
R + + + K+ L+G+ GK+SL+ + + F + T G
Sbjct: 29 ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHG 75
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 54.0 bits (131), Expect = 5e-11
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
YK++LLG VGKS+L F + G
Sbjct: 3 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAG 35
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 53.7 bits (130), Expect = 8e-11
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 17 QRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
R N Q + K+ ++G + GKS+LV R++ G + + + G
Sbjct: 10 GRENLYFQGP--ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 53.0 bits (128), Expect = 1e-10
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQE-STIG 63
+K++L+G+S VGK+ L++RF G F ST+G
Sbjct: 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVG 45
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 52.7 bits (127), Expect = 2e-10
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQF-HEYQESTIG 63
Y++VL+GE VGKS+L F + +G
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLG 41
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 49.6 bits (119), Expect = 4e-09
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQ--FHEYQESTI 62
Y++VL+GE VGKS+L F E
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG 72
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 46.2 bits (110), Expect = 6e-08
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 7 SNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
SN+ + + + K+V++G+ AVGK+ L+L F +G+ T+
Sbjct: 1 SNAMLAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF 57
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 44.7 bits (106), Expect = 2e-07
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 6 NSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+ +S+G + Q+ + KLV++G+ A GK+ L++ F + +F E T+
Sbjct: 5 HHHSSGVDLGTENLYFQSMIRK---KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV 58
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 44.1 bits (104), Expect = 4e-07
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 9 SNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
S+GR + Q + + KLVL+G+ GK++++ + + E T+
Sbjct: 8 SSGRENLYFQGRA-PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV 60
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP:
c.37.1.8
Length = 194
Score = 43.3 bits (102), Expect = 7e-07
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 10 NGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+ GR + + K V++G+ AVGK+ L++ + F E T+
Sbjct: 2 SPGAGRSSMAHGPGALML---KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV 51
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus}
SCOP: c.37.1.8
Length = 205
Score = 43.2 bits (102), Expect = 7e-07
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 1 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
++ ++ +S+G R + K K+V++G+S GK++L+ F + F E
Sbjct: 3 SSHHHHHHSSGLVPRGSHMDPNQNVKC---KIVVVGDSQCGKTALLHVFAKDCFPENYVP 59
Query: 61 TI 62
T+
Sbjct: 60 TV 61
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 42.8 bits (101), Expect = 1e-06
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
A+ K VL+G+ AVGK+SLV+ + + T
Sbjct: 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA 53
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding,
methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A
{Homo sapiens}
Length = 214
Score = 42.4 bits (100), Expect = 1e-06
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 17 QRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
++ + K+VL+G+ GK+SL++ F G F E T+
Sbjct: 22 SMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER 70
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 42.0 bits (99), Expect = 2e-06
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
+ K+V++G+S GK++L+ F + F E T+
Sbjct: 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 40
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 41.7 bits (98), Expect = 3e-06
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 1 MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
M +S++ + + G P A I + KLV++G+ A GK+ L++ F + QF E
Sbjct: 1 MGSSHHHHHHSSG---LVPRGSHMAAI-RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP 56
Query: 61 TI 62
T+
Sbjct: 57 TV 58
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 40.8 bits (96), Expect = 5e-06
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ + K V +G+ AVGK+ L++ + F T+
Sbjct: 2 SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF 42
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET:
GDP; 1.78A {Arabidopsis thaliana}
Length = 212
Score = 40.0 bits (94), Expect = 1e-05
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
K V +G+ AVGK+ +++ + +F T+
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV 42
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 39.8 bits (93), Expect = 1e-05
Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 1 MANSNNSNSNGRGGRIQRPN--DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 58
M +S++ + + G + R + + + K V++G+ AVGK+ L++ + F
Sbjct: 1 MGSSHHHHHHS-SGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY 59
Query: 59 ESTI 62
T+
Sbjct: 60 IPTV 63
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 38.6 bits (90), Expect = 4e-05
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
K V++G+ AVGK+ L++ + F T+
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 38
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 34.6 bits (79), Expect = 0.001
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 36 GESAVGKSSLVLRFVRGQFHEYQESTI 62
G+ +GKS L RFVR E+
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHT 61
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.004
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 16/74 (21%)
Query: 6 NSNSNGRGGRIQRPNDQTQAKICQYKL------VLLGESAVGKSSLVLRFVRGQFHEYQE 59
N N + R + + +L ++ G GK+ + L ++ Q
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL--SYKVQC 178
Query: 60 S--------TIGGC 65
+ C
Sbjct: 179 KMDFKIFWLNLKNC 192
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 32.2 bits (73), Expect = 0.006
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 11/40 (27%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQ-------ESTIG 63
+++L+G GKSS+ FH+ EST
Sbjct: 22 RILLMGLRRSGKSSIQKVV----FHKMSPNETLFLESTNK 57
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 32.3 bits (73), Expect = 0.008
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 31 KLVLLGESAVGKSSLV-LRFVRGQFHE--YQESTIG 63
KL+L+G S GKSS+ + F + +TI
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID 40
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 30.1 bits (67), Expect = 0.046
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 32 LVLLGESAVGKSSLVLRFVRGQFHEY 57
+LLG VGKSSL+ F+ +
Sbjct: 34 TLLLGIRRVGKSSLLRAFLNERPGIL 59
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 28.0 bits (62), Expect = 0.20
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 31 KLVLLGESAVGKSSLV 46
++++G+ VGKSS V
Sbjct: 41 TILVMGKGGVGKSSTV 56
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 27.9 bits (62), Expect = 0.23
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 31 KLVLLGESAVGKSSLV 46
+++LG+ VGKSS V
Sbjct: 38 TVLVLGKGGVGKSSTV 53
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 28.0 bits (63), Expect = 0.25
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 33 VLLGESAVGKSSLV 46
+ G+S VGKSSL+
Sbjct: 219 IFAGQSGVGKSSLL 232
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 27.9 bits (63), Expect = 0.26
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 33 VLLGESAVGKSSLV 46
V G+S VGKSSL+
Sbjct: 177 VFAGQSGVGKSSLL 190
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 27.5 bits (62), Expect = 0.28
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 33 VLLGESAVGKSSLV 46
+L G S VGKSS++
Sbjct: 169 ILAGPSGVGKSSIL 182
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 27.5 bits (62), Expect = 0.31
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 33 VLLGESAVGKSSLV 46
+ G S VGKSSL+
Sbjct: 173 TMAGLSGVGKSSLL 186
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 27.7 bits (61), Expect = 0.35
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 31 KLVLLGESAVGKSSLV 46
+ + GE+ GKSS +
Sbjct: 71 NVAVTGETGSGKSSFI 86
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 27.3 bits (60), Expect = 0.37
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 11/39 (28%)
Query: 32 LVLLGESAVGKSSLVLRFVRGQFHEYQ-------ESTIG 63
++L+G GKSS+ + V FH Q EST
Sbjct: 2 VLLMGVRRCGKSSI-CKVV---FHNMQPLDTLYLESTSN 36
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 26.7 bits (59), Expect = 0.73
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 15 RIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVR 51
++ + N + + + + G + GKS L VR
Sbjct: 139 KLWKLNGE-----PGW-VTIYGMAGCGKSVLAAEAVR 169
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei}
PDB: 1jb1_A 1kkl_A 1kkm_A*
Length = 205
Score = 26.5 bits (58), Expect = 0.76
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 32 LVLLGESAVGKSSLVLRFVR 51
+++ G+S VGKS L V+
Sbjct: 37 VLITGDSGVGKSETALELVQ 56
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 26.2 bits (57), Expect = 0.90
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 32 LVLLGESAVGKSSLVLRFVRGQFHEY 57
++LG GKSS++ + Y
Sbjct: 33 TLVLGLRRTGKSSIIKIGINELNLPY 58
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 26.2 bits (57), Expect = 0.99
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 32 LVLLGESAVGKSSLVLRFVR 51
+++ GE+ +GKS L L +
Sbjct: 19 VLITGEANIGKSELSLALID 38
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 26.1 bits (57), Expect = 1.1
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 7 SNSNGRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLV 46
+S+GR + Q + Q ++VL+G++ GKS+
Sbjct: 6 HHSSGRENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATG 46
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 26.2 bits (57), Expect = 1.1
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 33 VLLGESAVGKSSLV 46
+++G++ GKSSL+
Sbjct: 27 LIIGQNGSGKSSLL 40
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 26.1 bits (57), Expect = 1.2
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 26 KICQYK----LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPG 70
I +Y+ + ++G + VGKS+ + R + + T PG
Sbjct: 155 AINRYREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT---SYFPG 200
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 25.9 bits (56), Expect = 1.4
Identities = 8/18 (44%), Positives = 16/18 (88%)
Query: 29 QYKLVLLGESAVGKSSLV 46
++ L+++GES +GKS+L+
Sbjct: 18 EFTLMVVGESGLGKSTLI 35
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 25.9 bits (56), Expect = 1.5
Identities = 8/18 (44%), Positives = 16/18 (88%)
Query: 29 QYKLVLLGESAVGKSSLV 46
++ L+++GES +GKS+L+
Sbjct: 8 EFTLMVVGESGLGKSTLI 25
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 25.8 bits (57), Expect = 1.6
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 32 LVLLGESAVGKSSLV 46
LV++GE+ GK++L+
Sbjct: 381 LVMMGENGTGKTTLI 395
Score = 25.0 bits (55), Expect = 2.5
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 32 LVLLGESAVGKSSLV 46
L L+G + +GKS+ +
Sbjct: 106 LGLVGTNGIGKSTAL 120
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 25.2 bits (56), Expect = 1.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ +L L+G GK++ V GQF+E T+G
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG 56
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 25.4 bits (56), Expect = 2.2
Identities = 4/15 (26%), Positives = 10/15 (66%)
Query: 32 LVLLGESAVGKSSLV 46
+ +LG + +GK++
Sbjct: 297 IGILGPNGIGKTTFA 311
Score = 25.0 bits (55), Expect = 2.5
Identities = 6/15 (40%), Positives = 13/15 (86%)
Query: 32 LVLLGESAVGKSSLV 46
L +LG++ VGK++++
Sbjct: 28 LGVLGKNGVGKTTVL 42
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 25.0 bits (55), Expect = 2.4
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 31 KLVLLGESAVGKSSLV 46
+ ++G + GK++ V
Sbjct: 119 VVGIVGPNGTGKTTAV 134
Score = 24.2 bits (53), Expect = 5.1
Identities = 4/15 (26%), Positives = 11/15 (73%)
Query: 32 LVLLGESAVGKSSLV 46
+ ++G + +GK++ V
Sbjct: 385 IGIVGPNGIGKTTFV 399
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 25.1 bits (55), Expect = 2.6
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q ++ +G GK+ L +R + GQ+ + Q ++I
Sbjct: 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT 40
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 24.9 bits (55), Expect = 2.9
Identities = 4/15 (26%), Positives = 11/15 (73%)
Query: 32 LVLLGESAVGKSSLV 46
+ ++G + +GK++ V
Sbjct: 315 IGIVGPNGIGKTTFV 329
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 24.8 bits (55), Expect = 3.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 32 LVLLGESAVGKSSLV 46
LVL+G S VG+S +
Sbjct: 22 LVLIGASGVGRSHIK 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.6 bits (53), Expect = 3.5
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 13/50 (26%)
Query: 8 NSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRF--VRGQFH 55
N R + DQ++ + KL RF V FH
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLK-----------FSNRFLPVASPFH 428
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 24.5 bits (54), Expect = 3.6
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 33 VLLGESAVGKSSLV----LRFVRGQ 53
VL+GE VGK+++ + + +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNE 229
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli}
SCOP: c.37.1.20
Length = 195
Score = 24.2 bits (53), Expect = 4.0
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 33 VLLGESAVGKSSLV----LRFVRG 52
VL+GE VGK+++V R + G
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIING 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 24.4 bits (54), Expect = 4.2
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Query: 33 VLLGESAVGKSSLV----LRFVRG 52
VL+GE VGK+++V R V+G
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKG 218
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural
genomics, structural genomics consortium, SGC, unknown
function; 1.70A {Plasmodium falciparum}
Length = 187
Score = 24.2 bits (53), Expect = 4.3
Identities = 9/24 (37%), Positives = 17/24 (70%), Gaps = 4/24 (16%)
Query: 33 VLLGESAVGKSSLV----LRFVRG 52
+LLG+ VGK+++V ++ V+G
Sbjct: 47 ILLGDPGVGKTAIVEGLAIKIVQG 70
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 24.5 bits (54), Expect = 4.5
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 33 VLLGESAVGKSSLV----LRFVRG 52
VL+GE VGK+++ + +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINN 228
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 24.0 bits (53), Expect = 5.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 32 LVLLGESAVGKSSLV 46
LVLLG VG+ +
Sbjct: 8 LVLLGAHGVGRRHIK 22
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 24.0 bits (53), Expect = 5.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 31 KLVLLGESAVGKSSL 45
K+V+ G GKSSL
Sbjct: 6 KVVIAGRPNAGKSSL 20
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 24.1 bits (52), Expect = 5.5
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 32 LVLL-GESAVGKSSLVLRFVRGQFHEYQESTI 62
VLL G + GK++ +F+ EY E +
Sbjct: 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGV 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 24.1 bits (53), Expect = 6.0
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Query: 33 VLLGESAVGKSSLV----LRFVRGQ 53
+L+GES VGK+++ R V+G
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGD 235
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 23.7 bits (52), Expect = 6.5
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 40 VGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW 76
VG+ L + E G VP ++G+
Sbjct: 177 VGRYLQRLVLAEKRGDEIIIKDCGPVAFVPLVGKEGF 213
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 23.7 bits (51), Expect = 6.9
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 33 VLLGESAVGKSSLVLRFVR 51
+ G + GK+ LV RFV
Sbjct: 285 LATGATGTGKTLLVSRFVE 303
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 23.6 bits (52), Expect = 7.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 32 LVLLGESAVGKSSLV 46
+VL G S GKS+L+
Sbjct: 7 VVLSGPSGAGKSTLL 21
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 23.7 bits (52), Expect = 7.4
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 32 LVLLGESAVGKSSLV 46
+VL G SAVGKS++V
Sbjct: 23 VVLSGPSAVGKSTVV 37
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 23.6 bits (52), Expect = 8.7
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 32 LVLLGESAVGKSSLVLRFVRGQFHEYQES 60
+VL G S VGK ++ + + S
Sbjct: 11 IVLSGPSGVGKGTVREAVFKDPETSFDYS 39
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 23.2 bits (51), Expect = 8.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 32 LVLLGESAVGKSSLV 46
+VL G S VGK ++
Sbjct: 9 IVLSGPSGVGKGTVR 23
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 23.5 bits (50), Expect = 9.8
Identities = 5/16 (31%), Positives = 12/16 (75%)
Query: 31 KLVLLGESAVGKSSLV 46
+++L+G++ GKS+
Sbjct: 24 RIILVGKTGTGKSAAG 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.403
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,016,843
Number of extensions: 42850
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 132
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)