BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13552
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FKW|A Chain A, Murine Adenosine Deaminase (D295e)
Length = 349
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 31 IGVYENFIKNGIHQFVDLCSVANVSVF-----ILTTENYGYYIHGRSAHGFADTDMESMA 85
+ YE +KNGIH+ V V + V IL TE R HG+ + E++
Sbjct: 195 VEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTE--------RVGHGYHTIEDEALY 246
Query: 86 TQMLRE 91
++L+E
Sbjct: 247 NRLLKE 252
>pdb|1A4L|A Chain A, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|B Chain B, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|C Chain C, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|D Chain D, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4M|A Chain A, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|B Chain B, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|C Chain C, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|D Chain D, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1ADD|A Chain A, A Pre-Transition State Mimic Of An Enzyme: X-Ray Structure
Of Adenosine Deaminase With Bound 1-Deaza-Adenosine And
Zinc-Activated Water
pdb|3MVT|A Chain A, Crystal Structure Of Apo Mada At 2.2a Resolution
pdb|3MVT|C Chain C, Crystal Structure Of Apo Mada At 2.2a Resolution
pdb|3MVI|A Chain A, Crystal Structure Of Holo Mada At 1.6 A Resolution
pdb|3MVI|B Chain B, Crystal Structure Of Holo Mada At 1.6 A Resolution
Length = 349
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 31 IGVYENFIKNGIHQFVDLCSVANVSVF-----ILTTENYGYYIHGRSAHGFADTDMESMA 85
+ YE +KNGIH+ V V + V IL TE R HG+ + E++
Sbjct: 195 VEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTE--------RVGHGYHTIEDEALY 246
Query: 86 TQMLRE 91
++L+E
Sbjct: 247 NRLLKE 252
>pdb|1FKX|A Chain A, Murine Adenosine Deaminase (D296a)
Length = 349
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 31 IGVYENFIKNGIHQFVDLCSVANVSVF-----ILTTENYGYYIHGRSAHGFADTDMESMA 85
+ YE +KNGIH+ V V + V IL TE R HG+ + E++
Sbjct: 195 VEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTE--------RVGHGYHTIEDEALY 246
Query: 86 TQMLRE 91
++L+E
Sbjct: 247 NRLLKE 252
>pdb|2ADA|A Chain A, Atomic Structure Of Adenosine Deaminase Complexed With A
Transition-State Analog: Understanding Catalysis And
Immunodeficiency Mutations
Length = 352
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 31 IGVYENFIKNGIHQFVDLCSVANVSVF-----ILTTENYGYYIHGRSAHGFADTDMESMA 85
+ YE +KNGIH+ V V + V IL TE R HG+ + E++
Sbjct: 198 VEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTE--------RVGHGYHTIEDEALY 249
Query: 86 TQMLRE 91
++L+E
Sbjct: 250 NRLLKE 255
>pdb|3T1G|A Chain A, Engineering Of Organophosphate Hydrolase By Computational
Design And Directed Evolution
Length = 353
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 31 IGVYENFIKNGIHQFVDLC-----SVANVSVFILTTENYGYYIHGRSAHGFADTDMESMA 85
+ YE +KNGIH+ V V +V IL TE R HG+ + E++
Sbjct: 199 VEAYEGAVKNGIHRTVHAGEFGSPEVVREAVDILKTE--------RVGHGYHTIEDEALY 250
Query: 86 TQMLRE 91
++L+E
Sbjct: 251 NRLLKE 256
>pdb|1Y8A|A Chain A, Structure Of Gene Product Af1437 From Archaeoglobus
Fulgidus
Length = 332
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 86 TQMLREEEDLVGHRGLLPGTEQQTFEMTVPRQLR 119
TQ LR ++G RG L GTE + VP LR
Sbjct: 129 TQYLRRTASMIGVRGELHGTEVDFDSIAVPEGLR 162
>pdb|3KM8|A Chain A, Crystal Structuore Of Adenosine Deaminase From Mus
Musculus Complexed With 9-Deazainosine
pdb|3KM8|B Chain B, Crystal Structuore Of Adenosine Deaminase From Mus
Musculus Complexed With 9-Deazainosine
Length = 352
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 31 IGVYENFIKNGIHQFVDLCSVANVSVF-----ILTTENYGYYIHGRSAHGFADTDMESMA 85
+ YE +KNGIH+ V V + V IL TE R HG + E++
Sbjct: 198 VEAYEGAVKNGIHRTVHAGQVGSPEVVREAVDILKTE--------RVGHGEHTIEDEALY 249
Query: 86 TQMLRE 91
++L+E
Sbjct: 250 NRLLKE 255
>pdb|1UIP|A Chain A, Adenosine Deaminase (His 238 Glu Mutant)
Length = 349
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 31 IGVYENFIKNGIHQFVDLCSVANVSVF-----ILTTENYGYYIHGRSAHGFADTDMESMA 85
+ YE +KNGIH+ V V + V IL TE R G+ + E++
Sbjct: 195 VEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTE--------RVGEGYHTIEDEALY 246
Query: 86 TQMLRE 91
++L+E
Sbjct: 247 NRLLKE 252
>pdb|1UIO|A Chain A, Adenosine Deaminase (His 238 Ala Mutant)
Length = 349
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 31 IGVYENFIKNGIHQFVDLCSVANVSVF-----ILTTENYGYYIHGRSAHGFADTDMESMA 85
+ YE +KNGIH+ V V + V IL TE G G+ + E++
Sbjct: 195 VEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTERVGA--------GYHTIEDEALY 246
Query: 86 TQMLRE 91
++L+E
Sbjct: 247 NRLLKE 252
>pdb|3DEE|A Chain A, Crystal Structure Of A Putative Regulatory Protein
Involved In Transcription (Ngo1945) From Neisseria
Gonorrhoeae Fa 1090 At 2.25 A Resolution
Length = 249
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 31 IGVYENFIKNGIHQFVDLC 49
+ VY I+N IH F+D C
Sbjct: 32 LNVYIRLIRNNIHSFIDRC 50
>pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 95 LVGHRGLLPGTEQQTFEMTVPRQLRTYYKRVMAPLSMALKDLDYQVKDKMFVEALLDIEF 154
L+G GL E+ FE + +L K M + L+D+ ++VKD + V + E
Sbjct: 56 LLGVAGLNKSVEE--FENELKNKLTEEAKNKMENIKKELEDVGFKVKD-IIVVGIPHEEI 112
Query: 155 SDASADKGVFYIV 167
+ D+GV I+
Sbjct: 113 VKIAEDEGVDIII 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,045,863
Number of Sequences: 62578
Number of extensions: 194791
Number of successful extensions: 442
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 437
Number of HSP's gapped (non-prelim): 14
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)