BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13552
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BR76|MKS3_MOUSE Meckelin OS=Mus musculus GN=Tmem67 PE=1 SV=2
Length = 992
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 106/196 (54%), Gaps = 36/196 (18%)
Query: 5 PEDPLLKLGVAICTYLVVYLTQWLLLIGVYENFIKNGIHQFVDLCSVANVSVFILTTENY 64
P +L+ VA +LV+ + Q + YE FI++ I QFVDLCS++NVSVF+L+ +
Sbjct: 723 PYSRILRYAVATAIWLVIGIIQVVFFAAFYERFIEDKIRQFVDLCSMSNVSVFLLSHRCF 782
Query: 65 GYYIHGRSAHGFADTDMESMATQMLREEEDLVGHRGLLPGTEQQTFEMTVPRQLRTYYKR 124
GYYIHGRS HG ADT+ME M + RE E+L RGL+P T+ QTF++ V Q+R +Y R
Sbjct: 783 GYYIHGRSVHGHADTNMEEMNMNLKREAENLCSQRGLVPNTDGQTFQIAVSSQMRQHYDR 842
Query: 125 VMAPLSM-----------------------------------ALKDLDYQVKDKMFVEAL 149
+ L+ K++DY +KDK+ +E +
Sbjct: 843 IHETLTRRNGPARLLSSSGSTFEQSIKAYHAMNKFLGSFIDHVHKEMDYFIKDKLLLERI 902
Query: 150 LDIEFSDASADKGVFY 165
L +EF + +K +FY
Sbjct: 903 LGMEFMEP-MEKSIFY 917
>sp|P0C152|MKS3_RAT Meckelin OS=Rattus norvegicus GN=Tmem67 PE=1 SV=1
Length = 992
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 106/196 (54%), Gaps = 36/196 (18%)
Query: 5 PEDPLLKLGVAICTYLVVYLTQWLLLIGVYENFIKNGIHQFVDLCSVANVSVFILTTENY 64
P +L+ VA +LV+ + Q + YE FI++ I QFVDLCS++NVSVF+L+ +
Sbjct: 723 PYSRILRYAVATTIWLVIGIVQVVFFAAFYERFIEDKIRQFVDLCSMSNVSVFLLSHRCF 782
Query: 65 GYYIHGRSAHGFADTDMESMATQMLREEEDLVGHRGLLPGTEQQTFEMTVPRQLRTYYKR 124
GYYIHGRS HG ADT+ME M + RE E+L RGL+P T+ QTF++ V Q+R +Y R
Sbjct: 783 GYYIHGRSVHGHADTNMEDMNMNLRREAENLCSQRGLVPNTDGQTFQIAVSSQMRQHYDR 842
Query: 125 VMAPLSM-----------------------------------ALKDLDYQVKDKMFVEAL 149
+ L+ K++DY +KDK+ +E +
Sbjct: 843 IHETLTRRNGPARLLSSSGSTLEQSIKAYHAMNKFLGSFIDHVHKEMDYFIKDKLLLEKI 902
Query: 150 LDIEFSDASADKGVFY 165
L +EF + +K +FY
Sbjct: 903 LGMEFMEP-LEKSIFY 917
>sp|Q5HYA8|MKS3_HUMAN Meckelin OS=Homo sapiens GN=TMEM67 PE=1 SV=2
Length = 995
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 36/196 (18%)
Query: 5 PEDPLLKLGVAICTYLVVYLTQWLLLIGVYENFIKNGIHQFVDLCSVANVSVFILTTENY 64
P +L+ V+ +L + + Q + YE FI++ I QFVDLCS++N+SVF+L+ + +
Sbjct: 726 PYSCILRYAVSAALWLAIGIIQVVFFAVFYERFIEDKIRQFVDLCSMSNISVFLLSHKCF 785
Query: 65 GYYIHGRSAHGFADTDMESMATQMLREEEDLVGHRGLLPGTEQQTFEMTVPRQLRTYYKR 124
GYYIHGRS HG ADT+ME M + RE E+L RGL+P T+ QTFE+ + Q+R +Y R
Sbjct: 786 GYYIHGRSVHGHADTNMEEMNMNLKREAENLCSQRGLVPNTDGQTFEIAISNQMRQHYDR 845
Query: 125 VMAPL-----------------------------------SMALKDLDYQVKDKMFVEAL 149
+ L K++DY +KDK+ +E +
Sbjct: 846 IHETLIRKNGPARLLSSSASTFEQSIKAYHMMNKFLGSFIDHVHKEMDYFIKDKLLLERI 905
Query: 150 LDIEFSDASADKGVFY 165
L +EF + +K +FY
Sbjct: 906 LGMEFMEP-MEKSIFY 920
>sp|Q6MNT9|SYG_BDEBA Glycine--tRNA ligase OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=glyQS PE=3
SV=1
Length = 446
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 103 PGTEQQTFEMTVPRQLRTYYKRVMAPLSMALKDLDYQVKDKMFVEALLDIEF 154
PGT++Q F+ R+ Y K + P ++ KD D K + +A +D+EF
Sbjct: 209 PGTDEQFFKEWKERRWNFYIKFGIKPENLKFKDHD---KLAHYAKAAVDVEF 257
>sp|P03958|ADA_MOUSE Adenosine deaminase OS=Mus musculus GN=Ada PE=1 SV=3
Length = 352
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 31 IGVYENFIKNGIHQFVDLCSVANVSVF-----ILTTENYGYYIHGRSAHGFADTDMESMA 85
+ YE +KNGIH+ V V + V IL TE R HG+ + E++
Sbjct: 198 VEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTE--------RVGHGYHTIEDEALY 249
Query: 86 TQMLRE 91
++L+E
Sbjct: 250 NRLLKE 255
>sp|Q9K0Y9|MURE_NEIMB UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Neisseria meningitidis serogroup B (strain
MC58) GN=murE PE=3 SV=1
Length = 492
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 58 ILTTENYGYYIHGRSAHGFADTDMESMATQMLREEEDLVGHRGLLPGTEQQTF 110
IL + YG G G A T+ ++ TQ L + DL+G + + GT F
Sbjct: 94 ILAAQVYGNVSDGLKVWGVAGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGF 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,543,159
Number of Sequences: 539616
Number of extensions: 2481436
Number of successful extensions: 6762
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6755
Number of HSP's gapped (non-prelim): 9
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)