Query psy13552
Match_columns 173
No_of_seqs 79 out of 81
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 22:11:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sty_A Methylketone synthase 1 28.0 98 0.0033 22.4 5.0 48 43-95 29-77 (267)
2 3uan_A Heparan sulfate glucosa 27.3 1.2E+02 0.0042 24.6 6.0 67 77-156 175-268 (269)
3 1a88_A Chloroperoxidase L; hal 22.8 1.7E+02 0.006 21.5 5.6 42 44-90 39-80 (275)
4 1b9u_A Protein (ATP synthase); 21.6 1.2E+02 0.0041 17.1 3.6 17 31-47 18-34 (34)
5 3ia2_A Arylesterase; alpha-bet 19.9 2.4E+02 0.0081 20.7 5.8 41 45-90 38-78 (271)
6 4f0j_A Probable hydrolytic enz 19.1 2.5E+02 0.0086 20.5 5.8 47 43-94 63-110 (315)
7 1zoi_A Esterase; alpha/beta hy 19.1 2.3E+02 0.008 20.9 5.7 40 45-89 41-80 (276)
8 2kzs_A Death-associated protei 18.8 36 0.0012 24.9 0.9 11 41-51 16-26 (94)
9 3qmv_A Thioesterase, REDJ; alp 18.2 1.8E+02 0.006 21.8 4.8 47 43-95 68-114 (280)
10 1egw_A MADS box transcription 17.9 76 0.0026 21.9 2.4 41 41-90 30-70 (77)
No 1
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Probab=28.02 E-value=98 Score=22.39 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=35.8
Q ss_pred HHHHhhhhccccceeeeeccceeeEeecCCcCCCCc-cCHHHHHHHHHHHHhhc
Q psy13552 43 HQFVDLCSVANVSVFILTTENYGYYIHGRSAHGFAD-TDMESMATQMLREEEDL 95 (173)
Q Consensus 43 ~~FvDLCSvaNISV~iL~~~~~GyYIHGRS~hg~AD-~~M~el~~~L~rE~~~l 95 (173)
+.+++..+-.+..|+.+|.+. ||+|.....+ .+++++.+.+..-.+.+
T Consensus 29 ~~~~~~l~~~g~~v~~~D~~G-----~G~S~~~~~~~~~~~~~~~~~~~~l~~l 77 (267)
T 3sty_A 29 YKIVALMRSSGHNVTALDLGA-----SGINPKQALQIPNFSDYLSPLMEFMASL 77 (267)
T ss_dssp HHHHHHHHHTTCEEEEECCTT-----STTCSCCGGGCCSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCeEEEecccc-----CCCCCCcCCccCCHHHHHHHHHHHHHhc
Confidence 455666666679999999987 6788877655 68888888887766554
No 2
>3uan_A Heparan sulfate glucosamine 3-O-sulfotransferase; alpha/beta motif, CO-FACT PAPS/PAP, heparan sulfate oligosaccharides, golgi-localized transferase; HET: A3P NGY BDP SGN IDS; 1.84A {Mus musculus} PDB: 1vkj_A* 1zrh_A*
Probab=27.29 E-value=1.2e+02 Score=24.60 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=50.8
Q ss_pred CccCHHHHHHHHHHHHhhcccCCCCCCCCCCcEEEE---------------------------ecchHHHHHHHHHhhhh
Q psy13552 77 ADTDMESMATQMLREEEDLVGHRGLLPGTEQQTFEM---------------------------TVPRQLRTYYKRVMAPL 129 (173)
Q Consensus 77 AD~~M~el~~~L~rE~~~l~~~RGL~~~s~~QtFei---------------------------~l~~~~R~~yd~i~~~l 129 (173)
-...-++|..+...+.+.++..=|+.+......|.. -++++.|++..+.|++
T Consensus 175 l~v~yEdl~~dp~~~~~~i~~FLGl~~~~~~~~~~~~~~kg~~c~~~~~~~~cl~~skgr~~~~~~~~~r~~L~~~f~p- 253 (269)
T 3uan_A 175 HIVDGDRLIRDPFPEIQKVERFLKLSPQINASNFYFNKTKGFYCLRDSGKDRCLHESKGRAHPQVDPKLLDKLHEYFHE- 253 (269)
T ss_dssp EEEEHHHHHHCHHHHHHHHHHHTTCCSCCCGGGEEEETTTTEEEEEETTEEECCCTTSSCCCCCCCHHHHHHHHHHHHH-
T ss_pred EEEEHHHHHHCHHHHHHHHHHHhCCCCCcChhhhhcccccCceeecccccccccccccCCcCCCCCHHHHHHHHHHHHH-
Confidence 357789999999999999999999998754433332 3677788888888888
Q ss_pred hhccCCCCeEeechHHHHHHhcCcccC
Q psy13552 130 SMALKDLDYQVKDKMFVEALLDIEFSD 156 (173)
Q Consensus 130 ~h~~~d~dY~v~~k~~~E~ll~~ef~~ 156 (173)
|+ .-|++++|..|.|
T Consensus 254 -~n-----------~~L~~llg~~~~W 268 (269)
T 3uan_A 254 -PN-----------KKFFKLVGRTFDW 268 (269)
T ss_dssp -HH-----------HHHHHHHTCCCCC
T ss_pred -HH-----------HHHHHHhCcCCCC
Confidence 33 3477888887754
No 3
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12
Probab=22.83 E-value=1.7e+02 Score=21.47 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=28.7
Q ss_pred HHHhhhhccccceeeeeccceeeEeecCCcCCCCccCHHHHHHHHHH
Q psy13552 44 QFVDLCSVANVSVFILTTENYGYYIHGRSAHGFADTDMESMATQMLR 90 (173)
Q Consensus 44 ~FvDLCSvaNISV~iL~~~~~GyYIHGRS~hg~AD~~M~el~~~L~r 90 (173)
.+++..+-.+..|+.+|-+.| |+|.....+.+++++.+.+..
T Consensus 39 ~~~~~l~~~g~~vi~~D~~G~-----G~S~~~~~~~~~~~~~~dl~~ 80 (275)
T 1a88_A 39 NQMLFFLSHGYRVIAHDRRGH-----GRSDQPSTGHDMDTYAADVAA 80 (275)
T ss_dssp HHHHHHHHTTCEEEEECCTTS-----TTSCCCSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHCCceEEEEcCCcC-----CCCCCCCCCCCHHHHHHHHHH
Confidence 334444445689999998885 688766566777777666554
No 4
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.64 E-value=1.2e+02 Score=17.10 Aligned_cols=17 Identities=0% Similarity=0.083 Sum_probs=12.2
Q ss_pred HHHHHHhhhhhhHHHHh
Q psy13552 31 IGVYENFIKNGIHQFVD 47 (173)
Q Consensus 31 ~~i~er~v~~p~~~FvD 47 (173)
.++..+|+-.|+.+..|
T Consensus 18 ~~~l~kf~~~Pi~~~l~ 34 (34)
T 1b9u_A 18 VLFCMKYVWPPLMAAIE 34 (34)
T ss_dssp HHHHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 33567888889887654
No 5
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A
Probab=19.88 E-value=2.4e+02 Score=20.65 Aligned_cols=41 Identities=15% Similarity=0.341 Sum_probs=28.1
Q ss_pred HHhhhhccccceeeeeccceeeEeecCCcCCCCccCHHHHHHHHHH
Q psy13552 45 FVDLCSVANVSVFILTTENYGYYIHGRSAHGFADTDMESMATQMLR 90 (173)
Q Consensus 45 FvDLCSvaNISV~iL~~~~~GyYIHGRS~hg~AD~~M~el~~~L~r 90 (173)
.++..+-.+..|+.+|.+.| |+|.....+.+++++.+.+..
T Consensus 38 ~~~~l~~~g~~vi~~D~~G~-----G~S~~~~~~~~~~~~a~d~~~ 78 (271)
T 3ia2_A 38 QMEYLSSRGYRTIAFDRRGF-----GRSDQPWTGNDYDTFADDIAQ 78 (271)
T ss_dssp HHHHHHTTTCEEEEECCTTS-----TTSCCCSSCCSHHHHHHHHHH
T ss_pred HHHHHHhCCceEEEecCCCC-----ccCCCCCCCCCHHHHHHHHHH
Confidence 34444445799999999974 688766666777776665544
No 6
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa}
Probab=19.13 E-value=2.5e+02 Score=20.49 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=32.8
Q ss_pred HHHHhhhhccccceeeeeccceeeEeecCCcCCCC-ccCHHHHHHHHHHHHhh
Q psy13552 43 HQFVDLCSVANVSVFILTTENYGYYIHGRSAHGFA-DTDMESMATQMLREEED 94 (173)
Q Consensus 43 ~~FvDLCSvaNISV~iL~~~~~GyYIHGRS~hg~A-D~~M~el~~~L~rE~~~ 94 (173)
..+++..+-.+..|+.+|.+. ||+|..... +.+.+++.+.+..-.+.
T Consensus 63 ~~~~~~l~~~g~~v~~~d~~G-----~G~s~~~~~~~~~~~~~~~~~~~~~~~ 110 (315)
T 4f0j_A 63 ERTIDVLADAGYRVIAVDQVG-----FCKSSKPAHYQYSFQQLAANTHALLER 110 (315)
T ss_dssp HHHHHHHHHTTCEEEEECCTT-----STTSCCCSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEeecCC-----CCCCCCCCccccCHHHHHHHHHHHHHH
Confidence 344555555579999999887 567776655 77888887777665544
No 7
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A
Probab=19.07 E-value=2.3e+02 Score=20.91 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=26.7
Q ss_pred HHhhhhccccceeeeeccceeeEeecCCcCCCCccCHHHHHHHHH
Q psy13552 45 FVDLCSVANVSVFILTTENYGYYIHGRSAHGFADTDMESMATQML 89 (173)
Q Consensus 45 FvDLCSvaNISV~iL~~~~~GyYIHGRS~hg~AD~~M~el~~~L~ 89 (173)
+++..+-....|+.+|.+.| |+|.....+.+++++.+.+.
T Consensus 41 ~~~~L~~~g~~vi~~D~~G~-----G~S~~~~~~~~~~~~~~d~~ 80 (276)
T 1zoi_A 41 QLLFFLAHGYRVVAHDRRGH-----GRSSQVWDGHDMDHYADDVA 80 (276)
T ss_dssp HHHHHHHTTCEEEEECCTTS-----TTSCCCSSCCSHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEecCCCC-----CCCCCCCCCCCHHHHHHHHH
Confidence 34444445689999999884 68876655667776655443
No 8
>2kzs_A Death-associated protein 6; helical bundle,DHB domain, FAS death-domain associated prote rassf1C interacting domain, apoptosis; NMR {Homo sapiens} PDB: 2kzu_A
Probab=18.85 E-value=36 Score=24.92 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=9.1
Q ss_pred hhHHHHhhhhc
Q psy13552 41 GIHQFVDLCSV 51 (173)
Q Consensus 41 p~~~FvDLCSv 51 (173)
-+.+|||+|++
T Consensus 16 LfeEFv~~C~~ 26 (94)
T 2kzs_A 16 LFEEFLELCKM 26 (94)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 47899999994
No 9
>3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A*
Probab=18.21 E-value=1.8e+02 Score=21.80 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=35.3
Q ss_pred HHHHhhhhccccceeeeeccceeeEeecCCcCCCCccCHHHHHHHHHHHHhhc
Q psy13552 43 HQFVDLCSVANVSVFILTTENYGYYIHGRSAHGFADTDMESMATQMLREEEDL 95 (173)
Q Consensus 43 ~~FvDLCSvaNISV~iL~~~~~GyYIHGRS~hg~AD~~M~el~~~L~rE~~~l 95 (173)
..+++..+- +..|+.+|.+. ||+|.......+++++.+.+....+.+
T Consensus 68 ~~l~~~L~~-~~~v~~~D~~G-----~G~S~~~~~~~~~~~~a~~~~~~l~~~ 114 (280)
T 3qmv_A 68 RGWQERLGD-EVAVVPVQLPG-----RGLRLRERPYDTMEPLAEAVADALEEH 114 (280)
T ss_dssp TTHHHHHCT-TEEEEECCCTT-----SGGGTTSCCCCSHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCC-CceEEEEeCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 345555554 89999999887 678877777889999988887766654
No 10
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=17.90 E-value=76 Score=21.89 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=28.4
Q ss_pred hhHHHHhhhhccccceeeeeccceeeEeecCCcCCCCccCHHHHHHHHHH
Q psy13552 41 GIHQFVDLCSVANVSVFILTTENYGYYIHGRSAHGFADTDMESMATQMLR 90 (173)
Q Consensus 41 p~~~FvDLCSvaNISV~iL~~~~~GyYIHGRS~hg~AD~~M~el~~~L~r 90 (173)
+..+..=||. |.|+++++++.. .++-++-++|+++.+..++
T Consensus 30 KA~ELsvLCd-aeV~livfs~~g--------k~~~~~s~~~~~il~ry~~ 70 (77)
T 1egw_A 30 KAYELSVLCD-CEIALIIFNSSN--------KLFQYASTDMDKVLLKYTE 70 (77)
T ss_dssp HHHHHHHHTT-CEEEEEEECTTC--------CEEEEESSCHHHHHHHHHH
T ss_pred HHHHHhcccC-CeEEEEEECCCC--------CEeeCCCCCHHHHHHHHHh
Confidence 4455666776 789998887643 3455556789999887654
Done!