RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13552
         (173 letters)



>d1zuja1 a.25.1.1 (A:6-173) Dodecameric ferritin homolog
           {Lactococcus lactis, DpsA [TaxId: 1358]}
          Length = 168

 Score = 38.8 bits (90), Expect = 8e-05
 Identities = 14/112 (12%), Positives = 28/112 (25%), Gaps = 2/112 (1%)

Query: 51  VANVSVFILTTENYGYYIHGRSAHGFADTDMESMATQMLREEEDLVGHRGLLPGTEQQTF 110
           ++N+    ++    G Y    +                    E L+    L+P T  +  
Sbjct: 30  LSNIFYEKISLMQAGLYAKSANYRIKFREIALKEDEWFYLISEQLLDENELVPTTLDEFV 89

Query: 111 EMT--VPRQLRTYYKRVMAPLSMALKDLDYQVKDKMFVEALLDIEFSDASAD 160
                +    +  Y    A +   + D   Q         L   E   +   
Sbjct: 90  SNHKFIENDPKAKYWTDEALIENFINDFQNQNLFIGRAIKLAQKEEKFSLEL 141


>d1zs3a1 a.25.1.1 (A:3-173) Dodecameric ferritin homolog
           {Lactococcus lactis, DpsB [TaxId: 1358]}
          Length = 171

 Score = 32.5 bits (74), Expect = 0.015
 Identities = 14/112 (12%), Positives = 33/112 (29%), Gaps = 2/112 (1%)

Query: 51  VANVSVFILTTENYGYYIHGRSAHGFADTDMESMATQMLREEEDLVGHRGLLPGTEQQTF 110
           ++N+ +  +     G Y        +     +       +  + L+    ++P T ++  
Sbjct: 33  LSNLFIENIRLTQAGIYAKSPVKCEYLREIAQREVEYFFKISDLLLDENEIVPSTTEEFL 92

Query: 111 EMT--VPRQLRTYYKRVMAPLSMALKDLDYQVKDKMFVEALLDIEFSDASAD 160
           +    +    +  Y      L   + D   Q         L + E   A A 
Sbjct: 93  KYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAA 144


>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide
           reductase {Lactobacillus leichmannii [TaxId: 28039]}
          Length = 721

 Score = 24.9 bits (53), Expect = 6.5
 Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 4/57 (7%)

Query: 115 PRQLRTYYKRVMA----PLSMALKDLDYQVKDKMFVEALLDIEFSDASADKGVFYIV 167
                   +R+      PL  ALK   Y+ +  ++ E    +EF   +         
Sbjct: 562 FHYGAYLIQRIRFQDSDPLLPALKACGYRTEADIYTENTTCVEFPIKAVGADNPNFA 618


>d1dpsa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Escherichia
           coli, Dps [TaxId: 562]}
          Length = 159

 Score = 24.6 bits (53), Expect = 6.7
 Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 3/95 (3%)

Query: 51  VANVSVFILTTENYGYYIHG---RSAHGFADTDMESMATQMLREEEDLVGHRGLLPGTEQ 107
           V       L T+   + + G    + H   D    ++   +    E  V   G+  GT Q
Sbjct: 29  VIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQ 88

Query: 108 QTFEMTVPRQLRTYYKRVMAPLSMALKDLDYQVKD 142
                T  +        V   L            D
Sbjct: 89  VINSKTPLKSYPLDIHNVQDHLKELADRYAIVAND 123


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.411 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 652,516
Number of extensions: 27988
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 4
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.4 bits)