RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13556
         (127 letters)



>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two
           SUB-domain architecture, beta-sheet, structural protein;
           NMR {Homo sapiens} SCOP: g.27.1.2
          Length = 73

 Score = 34.9 bits (80), Expect = 9e-04
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 62  CEHNGKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTRDDCQG-RTLPGTCCP 116
           C  +G+ YN+ +       PC++C C  G ++C    C    DC       G CCP
Sbjct: 10  CVQDGQRYNDKDVWKPE--PCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCP 63



 Score = 29.2 bits (65), Expect = 0.12
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 21 PCEECRCTDGTVVCSMMQC-EIKPGCQTIQRPNQCCPE 57
          PC  C C  GTV+C  + C ++K          +CCP 
Sbjct: 27 PCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPI 64


>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
           lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
           acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
           musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
           2xrg_A* 2xr9_A*
          Length = 831

 Score = 31.9 bits (71), Expect = 0.053
 Identities = 23/107 (21%), Positives = 31/107 (28%), Gaps = 22/107 (20%)

Query: 17  PRFGPCEEC--RCTDGTVVCSMMQCEIKPGCQTIQRPNQCCPEFKCECEHNGKVYNNGEK 74
           P       C  RC +   V     C     C++    + CC +F   C            
Sbjct: 15  PWTNTSGSCKGRCFELQEV-GPPDCRCDNLCKSY---SSCCHDFDELCL----------- 59

Query: 75  LNSTLTPCQVCYCRGGALMCTHFTCFTRDDCQGRTLPGTCCPNYDHC 121
              T    +    R G +      C   +DC  R   G CC NY   
Sbjct: 60  --KTARGWECTKDRCGEVRNEENACHCSEDCLSR---GDCCTNYQVV 101


>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
          HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB:
          1xec_A* 1xcd_A*
          Length = 330

 Score = 25.7 bits (57), Expect = 4.4
 Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 1/24 (4%)

Query: 13 GELVPRFGPC-EECRCTDGTVVCS 35
           E+ P    C   C+C    V CS
Sbjct: 16 PEIEPMGPVCPFRCQCHLRVVQCS 39


>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
           receptor/immune system complex; 3.80A {Homo sapiens}
           SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
           PDB: 3loh_E
          Length = 897

 Score = 25.3 bits (54), Expect = 7.1
 Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 12/90 (13%)

Query: 43  PGCQTIQRPNQCCPEFKCECEHNGKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTR 102
             C    +    CP      +   + + +        T C+   C    L C H  C   
Sbjct: 157 DICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCC-HSECLG- 214

Query: 103 DDCQGRTLPGTC--CPNY-------DHCPP 123
            +C     P  C  C N+       + CPP
Sbjct: 215 -NCSQPDDPTKCVACRNFYLDGRCVETCPP 243


>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
           hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
           PDB: 3p5c_L
          Length = 400

 Score = 24.8 bits (53), Expect = 9.4
 Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 5/109 (4%)

Query: 24  ECRCTDGTVVCSMMQCEIKPGCQTIQRPNQCC----PEFKCECEHNGKVYNNGEKLNSTL 79
           EC C DG  + +  +CE    CQ     +Q C      +KC+CE   ++  + +   +  
Sbjct: 22  ECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG 81

Query: 80  TPCQVCY-CRGGALMCTHFTCFTRDDCQGRTLPGTCCPNYDHCPPLAHD 127
           +   + +  R      T                               D
Sbjct: 82  SIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSD 130


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.143    0.528 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,021,425
Number of extensions: 114634
Number of successful extensions: 739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 614
Number of HSP's successfully gapped: 244
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)