RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13556
         (127 letters)



>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 34.2 bits (78), Expect = 6e-04
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 62  CEHNGKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTRDDCQG-RTLPGTCCP 116
           C  +G+ YN+ +       PC++C C  G ++C    C    DC       G CCP
Sbjct: 10  CVQDGQRYNDKDVWKPE--PCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCP 63



 Score = 31.9 bits (72), Expect = 0.004
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 7  GGVFRSGELVPRFGPCEECRCTDGTVVCSMMQC-EIKPGCQTIQRPNQCCPE 57
           G   + + V +  PC  C C  GTV+C  + C ++K          +CCP 
Sbjct: 13 DGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPI 64


>d1jfla2 c.78.2.1 (A:116-228) Aspartate racemase {Archaeon
          Pyrococcus horikoshii [TaxId: 53953]}
          Length = 113

 Score = 27.8 bits (61), Expect = 0.21
 Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 4/75 (5%)

Query: 27 CTDGTVVCSMMQCEIKPGCQTIQRPNQCCPEFKCECEHNGKVYNNGEKLNSTLTPCQVCY 86
           T GT+V  + + E       I  P +   +      + G    N +     L       
Sbjct: 8  ATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKIL 67

Query: 87 CRGGALM----CTHF 97
             GA      CT  
Sbjct: 68 EERGAECIIAGCTEV 82


>d1llaa1 a.85.1.1 (A:2-109) Hemocyanin, N-terminal domain {Horseshoe
           crab (Limulus polyphemus) [TaxId: 6850]}
          Length = 108

 Score = 25.1 bits (55), Expect = 1.9
 Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 5/33 (15%)

Query: 84  VCYCR-----GGALMCTHFTCFTRDDCQGRTLP 111
               R     G            RDDC+G  +P
Sbjct: 76  AKEARTFVNEGLFAFAAEVAVLHRDDCKGLYVP 108


>d1hc1a1 a.85.1.1 (A:5-135) Hemocyanin, N-terminal domain {Spiny
           lobster (Panulirus interruptus) [TaxId: 6735]}
          Length = 131

 Score = 25.1 bits (55), Expect = 2.1
 Identities = 6/33 (18%), Positives = 9/33 (27%), Gaps = 5/33 (15%)

Query: 84  VCYCR-----GGALMCTHFTCFTRDDCQGRTLP 111
             Y R     G  +   + +        G  LP
Sbjct: 99  AAYFRERMNEGEFVYALYVSVIHSKLGDGIVLP 131


>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
           [TaxId: 4682]}
          Length = 425

 Score = 23.9 bits (51), Expect = 7.6
 Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 2/36 (5%)

Query: 89  GGALMCTHFTCFTRDDCQGRTLPGTCCPNYDHCPPL 124
            G+  C   TC+T  DC        C  +      L
Sbjct: 34  EGSPKCECNTCYTGPDC--SEKIQGCSADVASGDGL 67


>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
           hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 260

 Score = 23.8 bits (50), Expect = 7.8
 Identities = 11/108 (10%), Positives = 18/108 (16%), Gaps = 1/108 (0%)

Query: 14  ELVPRFGPCEECRCTDGTVVCSMMQCEIKPGCQTIQRPNQCCPEFKCECEHNGKVYNNGE 73
           +L              G      ++  +K      +                G +     
Sbjct: 46  KLTTVLTTHHHWDHAGGNEKLVKLESGLKVYGGDDRIGALTHKITHLSTLQVGSLNVKCL 105

Query: 74  KLNSTLTPCQVCYCRGGALMCTHFTCFTRDDCQGRTLPGTCCPNYDHC 121
                 T   +CY             FT D               D  
Sbjct: 106 ATPC-HTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGKFYEGTADEM 152


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.143    0.528 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 546,891
Number of extensions: 28365
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 79
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.6 bits)