Query psy13557
Match_columns 170
No_of_seqs 150 out of 1405
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 22:17:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h7d_A Aminolevulinic acid syn 49.0 6.2 0.00021 21.8 1.0 12 1-12 7-18 (49)
2 3j20_R 30S ribosomal protein S 26.9 20 0.00067 23.4 0.8 9 2-10 18-26 (113)
3 1ans_A Neurotoxin III; NMR {An 22.9 26 0.00089 16.3 0.6 8 4-11 10-17 (27)
4 3ixz_B Potassium-transporting 18.5 1.7E+02 0.0059 22.2 4.7 29 8-36 26-54 (290)
5 2zxe_B Na+,K+-ATPase beta subu 17.6 1.4E+02 0.0049 22.8 4.1 31 8-38 22-52 (305)
6 3u5c_L RP41, S18, YS12, 40S ri 17.4 39 0.0013 23.3 0.8 7 3-9 56-62 (156)
7 2knc_B Integrin beta-3; transm 15.7 2E+02 0.0068 17.1 3.7 29 64-92 17-45 (79)
8 2k85_A Glucocorticoid receptor 15.3 30 0.001 20.4 -0.2 24 2-25 25-48 (69)
9 3kdp_B Sodium/potassium-transp 14.3 1.4E+02 0.0047 22.7 3.2 33 8-40 4-36 (286)
10 1e8r_A Endo-1,4-beta-xylanase; 13.0 83 0.0028 17.2 1.2 25 123-147 7-31 (50)
No 1
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=48.95 E-value=6.2 Score=21.76 Aligned_cols=12 Identities=17% Similarity=0.454 Sum_probs=9.4
Q ss_pred CCcccccccCcc
Q psy13557 1 MDHHCPWINNCV 12 (170)
Q Consensus 1 ~DHHC~w~~nCI 12 (170)
++|+||+++.+=
T Consensus 7 ~l~~CPFL~R~p 18 (49)
T 1h7d_A 7 LLRSCPVLSQGP 18 (49)
T ss_dssp SCCSCCCCSSCS
T ss_pred hhccCCchhcCC
Confidence 478999998773
No 2
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.91 E-value=20 Score=23.43 Aligned_cols=9 Identities=56% Similarity=1.461 Sum_probs=4.2
Q ss_pred CcccccccC
Q psy13557 2 DHHCPWINN 10 (170)
Q Consensus 2 DHHC~w~~n 10 (170)
|-.|||.||
T Consensus 18 d~~cPf~G~ 26 (113)
T 3j20_R 18 DPKCPWHGN 26 (113)
T ss_dssp CSSSTTSSS
T ss_pred CCCCCCcce
Confidence 444554444
No 3
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=22.91 E-value=26 Score=16.27 Aligned_cols=8 Identities=63% Similarity=1.805 Sum_probs=5.5
Q ss_pred ccccccCc
Q psy13557 4 HCPWINNC 11 (170)
Q Consensus 4 HC~w~~nC 11 (170)
-|||-.||
T Consensus 10 gCpWGQ~~ 17 (27)
T 1ans_A 10 GCPWGQNC 17 (27)
T ss_dssp TCSSSCSS
T ss_pred CCcccccc
Confidence 37777776
No 4
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=18.49 E-value=1.7e+02 Score=22.18 Aligned_cols=29 Identities=10% Similarity=0.089 Sum_probs=22.5
Q ss_pred ccCccCcccHHHHHHHHHHHHHHHHHHHH
Q psy13557 8 INNCVSYANYKFFVLFLTYGVLYFGFILT 36 (170)
Q Consensus 8 ~~nCIG~~N~r~F~~fl~~~~~~~~~~~~ 36 (170)
.+.+.|+.=..+....|+|+.++.+++..
T Consensus 26 t~~~lGRT~~sW~~IllFYliFY~~Lagl 54 (290)
T 3ixz_B 26 TGQMLGRTLSRWVWISLYYVAFYVVMSGI 54 (290)
T ss_pred CCceeCcchhhHHHHHHHHHHHHHHHHHH
Confidence 46778888889999999988777666443
No 5
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=17.64 E-value=1.4e+02 Score=22.80 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=18.8
Q ss_pred ccCccCcccHHHHHHHHHHHHHHHHHHHHHH
Q psy13557 8 INNCVSYANYKFFVLFLTYGVLYFGFILTTM 38 (170)
Q Consensus 8 ~~nCIG~~N~r~F~~fl~~~~~~~~~~~~~~ 38 (170)
.+.+.|+.=..++.++|+|+.++.+++...+
T Consensus 22 ~~~~lGRT~~sW~~IllFYliFY~~La~lF~ 52 (305)
T 2zxe_B 22 KKEFLGRTGSSWFKIFLFYLIFYGCLAGIFI 52 (305)
T ss_dssp ------CCSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCeEecccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888899988888877766554443
No 6
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=17.43 E-value=39 Score=23.31 Aligned_cols=7 Identities=29% Similarity=1.127 Sum_probs=2.8
Q ss_pred ccccccc
Q psy13557 3 HHCPWIN 9 (170)
Q Consensus 3 HHC~w~~ 9 (170)
-.|||.|
T Consensus 56 ~kCPf~G 62 (156)
T 3u5c_L 56 KKCPFTG 62 (156)
T ss_dssp TTCTTTS
T ss_pred ccCCccc
Confidence 3344443
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=15.75 E-value=2e+02 Score=17.15 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHH
Q psy13557 64 LLAASLTTVKLALLAYHIYLMLHNRTTLD 92 (170)
Q Consensus 64 ~~~~~~~~~~~~l~~~~~~~I~~n~Tt~E 92 (170)
+++.++.+.+..++++-+..-....--++
T Consensus 17 vi~gilliGllllliwk~~~~i~DrrE~~ 45 (79)
T 2knc_B 17 VMGAILLIGLAALLIWKLLITIHDRKEFA 45 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455555444444443333
No 8
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=15.34 E-value=30 Score=20.38 Aligned_cols=24 Identities=8% Similarity=0.236 Sum_probs=18.5
Q ss_pred CcccccccCccCcccHHHHHHHHH
Q psy13557 2 DHHCPWINNCVSYANYKFFVLFLT 25 (170)
Q Consensus 2 DHHC~w~~nCIG~~N~r~F~~fl~ 25 (170)
||||.|.+.---..+++-|--|+.
T Consensus 25 d~~~~W~~~skkL~~~pE~~~yv~ 48 (69)
T 2k85_A 25 NHNENWLSVSRKMQASPEYQDYVY 48 (69)
T ss_dssp SSCSCHHHHHHHHTTSHHHHHHHH
T ss_pred hHHHHhHHHHHHHhcCccHHHHHH
Confidence 899999988777777777766553
No 9
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=14.26 E-value=1.4e+02 Score=22.67 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=24.3
Q ss_pred ccCccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13557 8 INNCVSYANYKFFVLFLTYGVLYFGFILTTMIL 40 (170)
Q Consensus 8 ~~nCIG~~N~r~F~~fl~~~~~~~~~~~~~~~~ 40 (170)
.+.+-|+.=-+++...|+|+.++.+++...++.
T Consensus 4 t~~~lGRT~~sW~~IllFYliFY~~La~lFa~~ 36 (286)
T 3kdp_B 4 KKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGT 36 (286)
T ss_dssp CCTTSCSSCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeCccHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888899999888887665554443
No 10
>1e8r_A Endo-1,4-beta-xylanase; hydrolase, beta strands, antiparallel sheets; NMR {Pseudomonas fluorescens} SCOP: g.29.1.1 PDB: 1qld_A
Probab=12.96 E-value=83 Score=17.25 Aligned_cols=25 Identities=16% Similarity=0.474 Sum_probs=0.0
Q ss_pred CcceeeeccccCCCCceeeccCCch
Q psy13557 123 DRLLWFFPVFSSLGNGWSFPTRADY 147 (170)
Q Consensus 123 ~~~~w~~P~~~~~~dG~~~~~~~~~ 147 (170)
+|+-+..|+-....+|+-|+.+.++
T Consensus 7 nwyg~~yPlC~~~~sGWGWENn~SC 31 (50)
T 1e8r_A 7 NWYGTLYPLCVTTTNGWGWEDQRSC 31 (50)
T ss_dssp EETTEEEEBCSTTCSSEEEETTEEE
T ss_pred ceeCCCceeecCCCCccceeCCCCe
Done!