RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13557
(170 letters)
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 81.0 bits (200), Expect = 8e-20
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 1 MDHHCPWINNCVSYANYKFFVLFLTYGVLY----FGFILTTMILSMTKVKSDHFWLVFTL 56
DHHCPW+NNC+ N+K+F+LFL Y LY ++ + ++ F ++
Sbjct: 68 FDHHCPWLNNCIGRRNHKYFLLFLLYLTLYLILLLVLSFYYLVYLIRNIELFFFLILSLF 127
Query: 57 SRCFPLLLLAASLTTVKLALLAYHIYLMLHNRTTLDAYR 95
S LL+L+ LL +H+YL+L N TT + +
Sbjct: 128 SSII-LLVLSLFFLLFLSFLLFFHLYLILKNITTYEYIK 165
>gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn
finger [General function prediction only].
Length = 309
Score = 74.4 bits (183), Expect = 2e-16
Identities = 39/148 (26%), Positives = 58/148 (39%), Gaps = 13/148 (8%)
Query: 1 MDHHCPWINNCVSYANYKFFVLFLTYG------VLYFGFILTTMILSMTKVKSDHFWLVF 54
DHHCPWINNCV + NY+FF FL Y VL I S+ S + F
Sbjct: 136 FDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTS--LAICF 193
Query: 55 TLSRCFPLLLLAASLTTVKLALLAYHIYLMLHNRTTLDAYRAPQFNYGPDRNGFDLGKRN 114
+ C L ++ + LL + IYL+L+N TT++ + + +
Sbjct: 194 LIFGCSLLGVV---FFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRESNL 250
Query: 115 NFYQVFGKDRLLWFFPVFSSLGNGWSFP 142
F +F + +G S
Sbjct: 251 PFTNIFDSSEGALPLDL--GIGQNLSTI 276
>gnl|CDD|234120 TIGR03144, cytochr_II_ccsB, cytochrome c-type biogenesis protein
CcsB. Members of this protein family represent one of
two essential proteins of system II for c-type
cytochrome biogenesis. Additional proteins tend to be
part of the system but can be replaced by chemical
reductants such as dithiothreitol. This protein is
designated CcsB in Bordetella pertussis and some other
bacteria, resC in Bacillus (where there is additional
N-terminal sequence), and CcsA in chloroplast. We use
the CcsB designation here. Member sequences show regions
of strong sequence conservation and variable-length,
poorly conserved regions in between; sparsely filled
columns were removed from the seed alignment prior to
model construction [Energy metabolism, Electron
transport, Protein fate, Protein modification and
repair].
Length = 243
Score = 28.3 bits (64), Expect = 1.7
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 21 VLFLTYGVLYFGFILTTMILSMT---KVKSDHFWLVFTLSRCFPLL 63
V+ L+Y L G +L+ L T ++ + SR PLL
Sbjct: 99 VMILSYAALLVGSLLSIAYLLKTRKQNLEYRTSRFLGANSRRLPLL 144
>gnl|CDD|183642 PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 246
Score = 28.3 bits (64), Expect = 2.1
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 129 FPVFSSLGNGWSFPTRADYAFAESGGFD 156
PVF G PTR +A A + G D
Sbjct: 44 VPVF-----GEGLPTRV-FALASTPGAD 65
>gnl|CDD|130205 TIGR01135, glmS, glucosamine--fructose-6-phosphate aminotransferase
(isomerizing). The member from Methanococcus jannaschii
contains an intein [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan,
Central intermediary metabolism, Amino sugars].
Length = 607
Score = 27.6 bits (62), Expect = 3.3
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 33 FILTTMILSMTKVKSDHFWLVFTLSRCFPLLLLAASLTTVKLALLAYHI 81
+ + +D L LL A + TV L LLAYHI
Sbjct: 543 IVFADEDDEFLESVADDV---IKLPEVEELL--APIVYTVPLQLLAYHI 586
>gnl|CDD|217514 pfam03362, Herpes_UL47, Herpesvirus UL47 protein.
Length = 452
Score = 26.6 bits (59), Expect = 8.1
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 56 LSRCFPLLLLAASLTTVKLALLAYHIYLMLHNRTTLDAYRA 96
LS CF L ++ A L L +LH + L A+RA
Sbjct: 201 LSSCFTLGVVLAETA---LQWLYVATGALLHPNSALAAFRA 238
>gnl|CDD|226664 COG4206, BtuB, Outer membrane cobalamin receptor protein [Coenzyme
metabolism].
Length = 608
Score = 26.6 bits (59), Expect = 8.7
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 92 DAYRAPQFNYGPDRNGF 108
D PDR+GF
Sbjct: 200 DVVAPGGTGAEPDRDGF 216
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 26.6 bits (59), Expect = 8.9
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 7 WINNCVSYANYKFFVLFLTYGVLYFGFILTTMILSMTKVKSDHF 50
N + F LF+ +G + IL+++ ++ K SD +
Sbjct: 408 LARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFY 451
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.144 0.476
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,847,222
Number of extensions: 804381
Number of successful extensions: 1192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1184
Number of HSP's successfully gapped: 58
Length of query: 170
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 80
Effective length of database: 6,945,742
Effective search space: 555659360
Effective search space used: 555659360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.0 bits)