RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13557
(170 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.25
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 157 KLYEPDEKEKL 167
KLY D L
Sbjct: 30 KLYADDSAPAL 40
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat
transaminase (isomerizing); glucosamine-6-phosphate
synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB:
2put_A* 2puv_A* 2puw_A*
Length = 367
Score = 29.0 bits (66), Expect = 0.71
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 43 TKVKSDHFWLVFTLSRCFPLLLLAASLTTVKLALLAYHI 81
+ +D + L L + L L++Y +
Sbjct: 310 AIISNDKVHTTLEVPETVDCL--QGLLNVIPLQLISYWL 346
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix,
structural genomics, BSGC structu by NIH, protein
structure initiative, PSI; 1.95A {Chlorobium tepidum
tls} SCOP: a.4.5.60 a.4.5.60
Length = 162
Score = 27.9 bits (63), Expect = 1.2
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 135 LGNGWSFPTRADYAFAESGGFDKLYEPDEKEKL 167
+ G+ F T ++A +L P + +L
Sbjct: 64 IAGGYRFLTEPEFADL----VRQLLAPVIQRRL 92
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing];
structural genomics; 2.28A {Francisella tularensis
subsp}
Length = 372
Score = 27.8 bits (63), Expect = 1.7
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 43 TKVKSDHFWLVFTLSRCFPLLLLAASLTTVKLALLAYHI 81
+ + +V L A + T+ L LL+YH+
Sbjct: 315 KERVNFDNSIVLELDAGHDFS--APVVFTIPLQLLSYHV 351
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813,
glucosamine-6-phosphate deamina PSI, protein structure
initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Length = 342
Score = 27.9 bits (63), Expect = 1.8
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 64 LLAASLTTVKLALLAYHI 81
+A L TV +L Y
Sbjct: 305 WKSAFLRTVPAQILGYQK 322
>1qd5_A Outer membrane phospholipase A; anti-parallel beta barrel, membrane
protein; HET: BOG; 2.17A {Escherichia coli} SCOP:
f.4.2.1 PDB: 1fw2_A* 1fw3_A* 1ilz_A* 1ild_A* 1im0_A*
Length = 275
Score = 27.6 bits (61), Expect = 1.8
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 98 QFNYGPDRNGFDLGKRNNFYQVFGKDRLLWFFPVFSSL 135
+ Y + N+ +G L +P+ +
Sbjct: 204 KIGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKHV 241
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics,
joint center structural genomics, JCSG, protein
structure initiative; HET: MSE; 1.50A {Listeria
monocytogenes}
Length = 373
Score = 27.5 bits (62), Expect = 2.1
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 64 LLAASLTTVKLALLAYHI 81
A L + +LA+HI
Sbjct: 326 YQAPFLMILPFQILAHHI 343
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing];
amidotransferase, ammonia channeling, glucosamine 6-
phosphate synthase; HET: F6R; 2.05A {Escherichia coli}
SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X
2vf5_X* 3ooj_A*
Length = 608
Score = 27.8 bits (63), Expect = 2.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 64 LLAASLTTVKLALLAYHI 81
++A TV L LLAYH+
Sbjct: 570 VIAPIFYTVPLQLLAYHV 587
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 2.4
Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 37/125 (29%)
Query: 15 ANYKFFVLFLTYGVLYFGFILTTMILSMTKVKSDHFWLVFT-------LSRCFPLLLLAA 67
+ +F + T++LS+ W +++ L+
Sbjct: 373 KMFDRLSVF-PPSAH-----IPTILLSL-------IWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 68 SLTTVKLALLAYHIYL----------MLHNRTTLDAYRAPQFNYGPDRNGFDLGKRNN-F 116
+++ IYL LH R+ +D Y P+ + D + + F
Sbjct: 420 QPKESTISI--PSIYLELKVKLENEYALH-RSIVDHYNIPK-TF--DSDDLIPPYLDQYF 473
Query: 117 YQVFG 121
Y G
Sbjct: 474 YSHIG 478
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1;
glucosamine-6-phosphate synthase, aldose/ketose
isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo
sapiens} PDB: 2zj4_A* 2v4m_A*
Length = 375
Score = 27.0 bits (61), Expect = 2.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 64 LLAASLTTVKLALLAYHI 81
L L+ + L LLA+H+
Sbjct: 337 CLQGILSVIPLQLLAFHL 354
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET:
GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB:
1mor_A* 1mos_A*
Length = 368
Score = 27.0 bits (61), Expect = 3.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 64 LLAASLTTVKLALLAYHI 81
++A TV L LLAYH+
Sbjct: 330 VIAPIFYTVPLQLLAYHV 347
>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding
protein, NPPSFA, national on protein structural and
functional analyses; 1.35A {Pyrococcus horikoshii} PDB:
2dec_A* 2df8_A 2cb0_A*
Length = 325
Score = 27.1 bits (61), Expect = 3.4
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 5/39 (12%)
Query: 43 TKVKSDHFWLVFTLSRCFPLLLLAASLTTVKLALLAYHI 81
+ D+ L R + LL+Y+
Sbjct: 272 QDLGQDY---SIELPRLSKDA--NPIPYLPIVQLLSYYK 305
>3knz_A Putative sugar binding protein; structural genomics, joint C
structural genomics, JCSG, protein structure initiative;
2.50A {Salmonella enterica subsp}
Length = 366
Score = 27.1 bits (61), Expect = 3.5
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 64 LLAASLTTVKLALLAYHI 81
A + L +L +
Sbjct: 323 DFAVFEYIIPLQMLCAIL 340
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA
protein, structural genomics, joint center for
structural G JCSG; HET: MSE CIT; 1.80A {Clostridium
difficile}
Length = 352
Score = 26.7 bits (60), Expect = 3.8
Identities = 3/18 (16%), Positives = 5/18 (27%)
Query: 64 LLAASLTTVKLALLAYHI 81
V + L+ I
Sbjct: 308 YYQTFNFIVPIQLICGEI 325
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative
phosphosugar isomerase, structural genomics, joint for
structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus
subtilis}
Length = 329
Score = 26.4 bits (59), Expect = 4.4
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 64 LLAASLTTVKLALLAYHI 81
LA + L A +
Sbjct: 293 YLAPLVLNRVLRSYADEL 310
>1qd6_C Protein (outer membrane phospholipase (ompla)); anti-parallel beta
barrel dimer, membrane protein; HET: HDS; 2.10A
{Escherichia coli} SCOP: f.4.2.1
Length = 240
Score = 26.3 bits (58), Expect = 5.3
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 98 QFNYGPDRNGFDLGKRNNFYQVFGKDRLLWFFPVFSSL 135
+ Y + N+ +G L +P+ +
Sbjct: 169 KIGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKHV 206
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 26.8 bits (59), Expect = 5.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 126 LWFFPVFSSLGNGWSFPTRADYAFAES 152
L +F +FSS+ G +A+Y FA S
Sbjct: 2013 LDYFVIFSSVSCGRGNAGQANYGFANS 2039
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative; HET: MSE; 1.75A {Silicibacter pomeroyi
dss-3}
Length = 344
Score = 25.9 bits (58), Expect = 6.9
Identities = 2/18 (11%), Positives = 3/18 (16%)
Query: 64 LLAASLTTVKLALLAYHI 81
L V +
Sbjct: 306 LTDPLSLIVSFYSMVEAF 323
>2b81_A Luciferase-like monooxygenase; TIM barrel, structural genomics,
PSI, protein structure INIT midwest center for
structural genomics, MCSG; HET: MES; 2.50A {Bacillus
cereus}
Length = 323
Score = 25.9 bits (57), Expect = 7.5
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 109 DLGKRNNFYQVFGKDRLLW--FFPVFSSLGNGWSFPTRADYA-FAESGGFDKLYEPD 162
+ ++F KD+L P+ + + + + + AE GF ++ D
Sbjct: 9 KFANHFGYNRMFAKDQLTLGVHIPIENYQFHAPTMEKQVELVQKAEQYGFTGVWLRD 65
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans
OS217}
Length = 334
Score = 26.0 bits (58), Expect = 8.0
Identities = 1/18 (5%), Positives = 5/18 (27%)
Query: 64 LLAASLTTVKLALLAYHI 81
+A + + +
Sbjct: 296 RIAPLALLQRFYIDVAAV 313
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Length = 347
Score = 25.6 bits (57), Expect = 8.8
Identities = 2/18 (11%), Positives = 4/18 (22%)
Query: 64 LLAASLTTVKLALLAYHI 81
L L + +
Sbjct: 311 YFCGLLHNCVLDVYNLAL 328
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 25.8 bits (57), Expect = 9.0
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 128 FFPVFSSLGNGWSFPTRADYAFA 150
+FSS+ + +YA A
Sbjct: 658 ALVLFSSVSGVLGSGGQGNYAAA 680
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.144 0.476
Gapped
Lambda K H
0.267 0.0860 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,663,718
Number of extensions: 143361
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 29
Length of query: 170
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 83
Effective length of database: 4,272,666
Effective search space: 354631278
Effective search space used: 354631278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.3 bits)