BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13558
         (73 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 20  VIKQEGVLALWKGFMPYFLRIGPHTVLTFIFLEQM 54
           ++++EG  A +KGFMP FLR+G   V+ F+  EQ+
Sbjct: 248 MLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQL 282


>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 37.7 bits (86), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 2   KTIDGKPEFKGAFDVLGKVIKQEGVLALWKGFMPYFLRIGPHTVLTFIFLEQMCIFYNKK 61
           K I  + ++KG  D + ++ K++G L+ W+G +   +R  P   L F F ++    Y + 
Sbjct: 42  KQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDK----YKQI 97

Query: 62  FMG 64
           F+G
Sbjct: 98  FLG 100


>pdb|1J6O|A Chain A, Crystal Structure Of Tatd-related Deoxyribonuclease
           (tm0667) From Thermotoga Maritima At 1.8 A Resolution
          Length = 268

 Score = 25.4 bits (54), Expect = 7.9,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 17  LGKVIKQEGVLALWKGFMPYFLRIGPHTVLTFIFLEQM 54
           L K  K E V+A+ +  + +F  I P  V   +F+EQ+
Sbjct: 89  LEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQI 126


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.146    0.459 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,477,341
Number of Sequences: 62578
Number of extensions: 85182
Number of successful extensions: 179
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 6
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)