Query psy13558
Match_columns 73
No_of_seqs 100 out of 1323
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 22:18:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 99.4 2.5E-13 8.4E-18 80.9 5.1 54 6-59 234-287 (303)
2 2lck_A Mitochondrial uncouplin 99.4 3E-12 1E-16 76.2 7.1 55 7-61 141-195 (303)
3 1okc_A ADP, ATP carrier protei 99.3 3.2E-12 1.1E-16 75.8 7.0 54 7-60 150-203 (297)
4 1okc_A ADP, ATP carrier protei 99.3 1.3E-11 4.5E-16 73.2 8.5 52 8-59 48-99 (297)
5 3tgu_G UQCRQ, mitochondrial ub 76.6 5.1 0.00017 19.5 4.3 32 28-59 36-67 (81)
6 1pp9_G Ubiquinol-cytochrome C 63.7 11 0.00038 18.2 5.0 36 24-59 32-67 (81)
7 3cx5_H Cytochrome B-C1 complex 45.9 20 0.00068 17.9 2.4 34 26-59 44-77 (93)
8 2acm_A Mucin-1; auto-catalytic 44.4 2.1 7.3E-05 19.7 -1.1 19 12-30 41-59 (66)
9 3f2e_A SIRV coat protein; four 36.3 29 0.001 16.8 2.1 33 8-40 6-42 (100)
10 4f9k_A CAMP-dependent protein 32.7 27 0.00092 17.5 1.7 35 19-53 42-76 (95)
11 2lug_A Myelin basic protein; i 30.0 34 0.0012 13.6 2.9 21 52-72 14-34 (36)
12 3fbl_A Putative uncharacterize 27.3 54 0.0019 15.1 2.4 26 13-38 4-33 (82)
13 2izx_A CAMP-dependent protein 21.5 31 0.0011 13.9 0.6 27 24-50 5-31 (41)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.41 E-value=2.5e-13 Score=80.87 Aligned_cols=54 Identities=31% Similarity=0.519 Sum_probs=49.9
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13558 6 GKPEFKGAFDVLGKVIKQEGVLALWKGFMPYFLRIGPHTVLTFIFLEQMCIFYN 59 (73)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~G~~g~~~G~~~~~~~~~p~~~i~f~~y~~~~~~~~ 59 (73)
....|+++.+|+++|+++||++|||||+.|+++|.+|.+++.|.+||.+++.+.
T Consensus 234 ~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 234 ALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp CSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred cccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344699999999999999999999999999999999999999999999997654
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.35 E-value=3e-12 Score=76.15 Aligned_cols=55 Identities=16% Similarity=0.306 Sum_probs=51.0
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13558 7 KPEFKGAFDVLGKVIKQEGVLALWKGFMPYFLRIGPHTVLTFIFLEQMCIFYNKK 61 (73)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~G~~g~~~G~~~~~~~~~p~~~i~f~~y~~~~~~~~~~ 61 (73)
...|+++.+++++|+++||++|||||+.|+++|.+|..+++|.+||.+++.+.+.
T Consensus 141 ~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~ 195 (303)
T 2lck_A 141 GRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA 195 (303)
T ss_dssp SSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3478999999999999999999999999999999999999999999999887643
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.35 E-value=3.2e-12 Score=75.79 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=50.1
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13558 7 KPEFKGAFDVLGKVIKQEGVLALWKGFMPYFLRIGPHTVLTFIFLEQMCIFYNK 60 (73)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~G~~g~~~G~~~~~~~~~p~~~i~f~~y~~~~~~~~~ 60 (73)
...|+++.+++++|+++||++|||||+.|+++|.+|..+++|.+||.+++.+.+
T Consensus 150 ~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 150 QREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp TCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred CcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346899999999999999999999999999999999999999999999987653
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.32 E-value=1.3e-11 Score=73.15 Aligned_cols=52 Identities=25% Similarity=0.592 Sum_probs=48.8
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13558 8 PEFKGAFDVLGKVIKQEGVLALWKGFMPYFLRIGPHTVLTFIFLEQMCIFYN 59 (73)
Q Consensus 8 ~~~~~~~~~~~~i~~~~G~~g~~~G~~~~~~~~~p~~~i~f~~y~~~~~~~~ 59 (73)
+.|+++++++++++++||++|||||+.+++++.+|..+++|.+||.+++.+.
T Consensus 48 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 99 (297)
T 1okc_A 48 KQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL 99 (297)
T ss_dssp GSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999999999999999999998543
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=76.62 E-value=5.1 Score=19.49 Aligned_cols=32 Identities=9% Similarity=0.376 Sum_probs=23.0
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13558 28 ALWKGFMPYFLRIGPHTVLTFIFLEQMCIFYN 59 (73)
Q Consensus 28 g~~~G~~~~~~~~~p~~~i~f~~y~~~~~~~~ 59 (73)
..+|-....++..+|...+...+|++..+...
T Consensus 36 N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 36 NVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 33444555667788999999999998876544
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=63.73 E-value=11 Score=18.22 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=26.1
Q ss_pred hhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13558 24 EGVLALWKGFMPYFLRIGPHTVLTFIFLEQMCIFYN 59 (73)
Q Consensus 24 ~G~~g~~~G~~~~~~~~~p~~~i~f~~y~~~~~~~~ 59 (73)
.|+...+|-+...++..+|...+...+|++..+...
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e 67 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFE 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHH
Confidence 344455555666777788999999999999876654
No 7
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=45.90 E-value=20 Score=17.86 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=23.4
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13558 26 VLALWKGFMPYFLRIGPHTVLTFIFLEQMCIFYN 59 (73)
Q Consensus 26 ~~g~~~G~~~~~~~~~p~~~i~f~~y~~~~~~~~ 59 (73)
+..++|-+...++..+|...+...+|++.++...
T Consensus 44 i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e 77 (93)
T 3cx5_H 44 VFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNE 77 (93)
T ss_dssp SSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhcceEEechHhHHHHHHHHHHHHHH
Confidence 3334444555666788888898899988876543
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=44.39 E-value=2.1 Score=19.70 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHhhhhhhhc
Q psy13558 12 GAFDVLGKVIKQEGVLALW 30 (73)
Q Consensus 12 ~~~~~~~~i~~~~G~~g~~ 30 (73)
++...+..|++++++.|++
T Consensus 41 ~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 41 DISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHccCCeeeee
Confidence 4677788888888887764
No 9
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=36.32 E-value=29 Score=16.81 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHhhhh----hhhccchHHHHHHH
Q psy13558 8 PEFKGAFDVLGKVIKQEGV----LALWKGFMPYFLRI 40 (73)
Q Consensus 8 ~~~~~~~~~~~~i~~~~G~----~g~~~G~~~~~~~~ 40 (73)
+++.++-.-+..++.+.|+ +++|.|+.-.+.|.
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 4555555566667777775 57899988776664
No 10
>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit; structural genomics, PSI-biology; 2.80A {Homo sapiens} PDB: 2ezw_A 3im3_A 3im4_A
Probab=32.74 E-value=27 Score=17.49 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=28.9
Q ss_pred HHHHhhhhhhhccchHHHHHHHHHHHHHHHHHHHH
Q psy13558 19 KVIKQEGVLALWKGFMPYFLRIGPHTVLTFIFLEQ 53 (73)
Q Consensus 19 ~i~~~~G~~g~~~G~~~~~~~~~p~~~i~f~~y~~ 53 (73)
.-++..|+..+.+++...+++.-|...+.|+.-.+
T Consensus 42 ~YlqkhgI~eLLqe~tv~Ll~~RPeDPv~FLaeYF 76 (95)
T 4f9k_A 42 LYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHF 76 (95)
T ss_dssp HHHHHTCTTTTTHHHHHHHHHHCCSCHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 34567899999999999999999999888876443
No 11
>2lug_A Myelin basic protein; intrinsically disordered proteins, dodecylphosphocholine MIC myelin membrane, lipid binding protein; NMR {Mus musculus}
Probab=29.95 E-value=34 Score=13.63 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=13.8
Q ss_pred HHHHHHHhhhcCCCCCCCCCC
Q psy13558 52 EQMCIFYNKKFMGNTSGKGSG 72 (73)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~ 72 (73)
++++.........+..+|+-|
T Consensus 14 hffknivsprtppp~q~kgrg 34 (36)
T 2lug_A 14 HFFKNIVTPRTPPPSQGKGRG 34 (36)
T ss_dssp HHHHHHHCSSCCCCCBCTTTT
T ss_pred HhhhhccCCCCCCCcccccCC
Confidence 445666666666777777665
No 12
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=27.26 E-value=54 Score=15.12 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhhh----hhccchHHHHH
Q psy13558 13 AFDVLGKVIKQEGVL----ALWKGFMPYFL 38 (73)
Q Consensus 13 ~~~~~~~i~~~~G~~----g~~~G~~~~~~ 38 (73)
+--++++|++.+|+. |+|-.+...++
T Consensus 4 lrlaikeicktdgipnikwgmyiafgekll 33 (82)
T 3fbl_A 4 LRLAIKEICKTDGIPNIKWGMYIAFGEKLL 33 (82)
T ss_dssp HHHHHHHHHHHTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCcchhHHHHHHHHHHH
Confidence 345678999999975 45544444444
No 13
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=21.46 E-value=31 Score=13.94 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=18.1
Q ss_pred hhhhhhccchHHHHHHHHHHHHHHHHH
Q psy13558 24 EGVLALWKGFMPYFLRIGPHTVLTFIF 50 (73)
Q Consensus 24 ~G~~g~~~G~~~~~~~~~p~~~i~f~~ 50 (73)
+++..+.+.+...+++.-|...+.|+.
T Consensus 5 ~~l~~lL~~~~~~vl~~qP~di~~f~a 31 (41)
T 2izx_A 5 PGLTELLQGYTVEVLRQQPPDLVEFAV 31 (41)
T ss_dssp TTHHHHHHHHHHHHHHHCCSCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 355556666777777777777777653
Done!