RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13558
         (73 letters)



>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
           translocator, mitochondrial carrier transport protein,
           structural genomics; NMR {Mus musculus}
          Length = 303

 Score = 84.3 bits (209), Expect = 9e-22
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 6   GKPEFKGAFDVLGKVIKQEGVLALWKGFMPYFLRIGPHTVLTFIFLEQMCIFYNKKF 62
              ++  A      ++++EG  A +KGFMP FLR+G   V+ F+  EQ+       +
Sbjct: 234 ALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290



 Score = 39.6 bits (93), Expect = 1e-05
 Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 6   GKPEFKGAFDVLGKVIKQEGVLALWKGFMPYFLRIGPHTVLTFIFLEQMCIFYNKKFMGN 65
              +++G    +  +++ EG  +L+ G +    R      +     + +     K+F   
Sbjct: 43  ASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSV-----KQFYTK 97

Query: 66  TSGKGS 71
            S    
Sbjct: 98  GSEHAG 103



 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 8   PEFKGAFDVLGKVIKQEGVLALWKGFMPYFLRIGPHTV 45
             ++   +    + ++EG+  LWKG  P   R      
Sbjct: 142 RRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNC 179


>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
           transporter, nucleotide translocation, membrane protein,
           transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
           f.42.1.1 PDB: 2c3e_A*
          Length = 297

 Score = 44.9 bits (107), Expect = 2e-07
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 2   KTIDGKPEFKGAFDVLGKVIKQEGVLALWKGFMPYFLRIGPHTVLTFIFLEQMCIFYNKK 61
           K I  + ++KG  D + ++ K++G L+ W+G +   +R  P   L F F ++    Y + 
Sbjct: 42  KQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDK----YKQI 97

Query: 62  FMGNTSGKGSG 72
           F+G        
Sbjct: 98  FLGGVDRHKQF 108



 Score = 43.4 bits (103), Expect = 7e-07
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 6   GKPEFKGAFDVLGKVIKQEGVLALWKGFMPYFLRIGPHTVLTFIFLEQM 54
            + EF G  + + K+ K +G+  L++GF      I  +    F   +  
Sbjct: 149 AQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTA 197



 Score = 39.9 bits (94), Expect = 1e-05
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 6/58 (10%)

Query: 6   GKPEFKGAFDVLGKVIKQEGVLALWKGFMPYFLRIGPHTVLTFIFLEQMCIFYNKKFM 63
               + G  D   K+ K EG  A +KG     LR         +  +++     KKF+
Sbjct: 246 ADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDEI-----KKFV 297


>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2,
          protein structure initiative; 2.70A {Staphylococcus
          saprophyticus subsp}
          Length = 199

 Score = 24.2 bits (53), Expect = 3.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 54 MCIFYNKKFMGNT 66
          M +FYNK+ +G+ 
Sbjct: 1  MNLFYNKEAVGDV 13


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 23.5 bits (50), Expect = 8.9
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 18/72 (25%)

Query: 3   TIDGKPEFKGAFDVLGKVIKQEGVLALW---KGFMP--YFLRIGPHTVLTFIFLEQMCIF 57
           T+D +  F    ++L            W       P   +L   P +    I + Q+  +
Sbjct: 202 TLDAEKVFTQGLNILE-----------WLENPSNTPDKDYLLSIPIS-CPLIGVIQLAHY 249

Query: 58  YNK-KFMGNTSG 68
               K +G T G
Sbjct: 250 VVTAKLLGFTPG 261


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.146    0.459 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,154,026
Number of extensions: 55434
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 8
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.5 bits)