RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13558
         (73 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 45.1 bits (105), Expect = 6e-08
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 6   GKPEFKGAFDVLGKVIKQEGVLALWKGFMPYFLRIGPHTVLTFIFLEQM 54
               + G  D   K+ K EG  A +KG     LR G       +  +++
Sbjct: 245 ADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFVLVLYDEI 292


>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
           malonyl-CoA ACP transacylase FabD {Escherichia coli
           [TaxId: 562]}
          Length = 235

 Score = 24.0 bits (51), Expect = 2.1
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 20  VIKQEGVLALWKGFMPYFLRIGPHTVLT 47
           V   + V  +    + +   +GP  VLT
Sbjct: 183 VQWTKSVEYMAAQGVEHLYEVGPGKVLT 210


>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase
          alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
          Length = 315

 Score = 23.8 bits (50), Expect = 3.0
 Identities = 4/25 (16%), Positives = 12/25 (48%)

Query: 1  MKTIDGKPEFKGAFDVLGKVIKQEG 25
          +  I    +F+  +D    V++++ 
Sbjct: 33 VVQIIYSDKFRDVYDYFRAVLQRDE 57


>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
           malonyl-CoA ACP transacylase FabD {Streptomyces
           coelicolor A3(2) [TaxId: 100226]}
          Length = 253

 Score = 22.9 bits (48), Expect = 4.4
 Identities = 3/11 (27%), Positives = 5/11 (45%)

Query: 37  FLRIGPHTVLT 47
            + + P   LT
Sbjct: 211 IIEVCPGGTLT 221


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.146    0.459 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 287,984
Number of extensions: 11191
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 5
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.6 bits)