BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1356
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1
Length = 215
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 45/48 (93%), Gaps = 1/48 (2%)
Query: 18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
RPN Q+QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 8 RPNGQSQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 55
>sp|Q5RBG1|RAB5B_PONAB Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1
Length = 215
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 44/48 (91%), Gaps = 1/48 (2%)
Query: 18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 8 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 55
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1
Length = 215
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 44/48 (91%), Gaps = 1/48 (2%)
Query: 18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 8 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 55
>sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1
Length = 215
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 44/48 (91%), Gaps = 1/48 (2%)
Query: 18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 8 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 55
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1
Length = 216
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Query: 11 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
GRGG RPN KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 3 GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 56
>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1
Length = 216
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Query: 11 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
GRGG RPN KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 3 GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 56
>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1
Length = 216
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Query: 11 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
GRGG RPN KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 3 GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 56
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2
Length = 216
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Query: 11 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
GRGG RPN KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 3 GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 56
>sp|Q98932|RAB5C_CHICK Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1
Length = 216
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Query: 11 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
GRGG RPN KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 3 GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 56
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Query: 18 RPN-DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
RPN T KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 8 RPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 55
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Query: 18 RPN-DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
RPN T KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 8 RPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 55
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Query: 18 RPN-DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
RPN T KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 8 RPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 55
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Query: 18 RPN-DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
RPN T KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 8 RPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 55
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Query: 18 RPN-DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
RPN T KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 8 RPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 55
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Query: 18 RPN-DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
RPN T KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 8 RPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA 55
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2
Length = 216
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 43/55 (78%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Query: 11 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
GRGG RPN KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct: 3 GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 56
>sp|Q86JP3|RAB5A_DICDI Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A
PE=3 SV=1
Length = 201
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 35/39 (89%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
KI Q+KLVLLGE+AVGKSSLVLRFVRG F +YQESTIG
Sbjct: 6 KIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGA 44
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1
PE=2 SV=1
Length = 200
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
KLVLLG+ GKSSLV+RFV+GQF E+QESTIG
Sbjct: 12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGA 45
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Length = 200
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
KLVLLG+ GKSSLV+RFV+GQF E+QESTIG
Sbjct: 12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGA 45
>sp|P36586|YPT5_SCHPO GTP-binding protein ypt5 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ypt5 PE=1 SV=1
Length = 211
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
KLVLLG+SAVGKSSLVLRFV+ QF +Y+ESTIG
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGA 49
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
KLVLLG+ GKSSLVLRFV+ QF E+QESTIG
Sbjct: 12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA 45
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
KLVLLG+ GKSSLVLRFV+ QF E+QESTIG
Sbjct: 12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA 45
>sp|P36018|YPT52_YEAST GTP-binding protein YPT52 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YPT52 PE=1 SV=1
Length = 234
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
+ Q+KLVLLG+S+VGKSS+V RFV+ F E +ESTIG
Sbjct: 1 MLQFKLVLLGDSSVGKSSIVHRFVKDTFDELRESTIGA 38
>sp|P36017|VPS21_YEAST Vacuolar protein sorting-associated protein 21 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS21 PE=1
SV=1
Length = 210
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 28/38 (73%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
+ KLVLLGE+AVGKSS+VLRFV F E +E TIG
Sbjct: 5 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGA 42
>sp|Q9CB01|RABF1_ARATH Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1
SV=1
Length = 202
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
AK + KLVLLG+S VGKS +VLRFVRGQF + T+G
Sbjct: 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDATSKVTVGA 68
>sp|P36019|YPT53_YEAST GTP-binding protein YPT53 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YPT53 PE=1 SV=1
Length = 220
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/34 (70%), Positives = 27/34 (79%)
Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
K+VLLGESAVGKSS+VLRFV F E +E TIG
Sbjct: 14 KVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGA 47
>sp|P90726|RAB18_CAEBR Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18
PE=3 SV=1
Length = 202
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 20 NDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+D + + + K++++GES VGKSSL+LRFV F Q +TIG
Sbjct: 2 SDDSSSPLTTLKILIIGESGVGKSSLMLRFVDDVFDPEQAATIG 45
>sp|Q8MXS1|RAB18_CAEEL Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18
PE=3 SV=1
Length = 203
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 20 NDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+D + + + K++++GES VGKSSL+LRFV F Q +TIG
Sbjct: 2 SDDSSSPLTTLKILIIGESGVGKSSLMLRFVDDVFDPEQAATIG 45
>sp|Q9FGK5|RAA5A_ARATH Ras-related protein RABA5a OS=Arabidopsis thaliana GN=RABA5A PE=2
SV=1
Length = 221
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+SAVGKS+L+ RF R +F+ +STIG
Sbjct: 15 FKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIG 48
>sp|Q92928|RAB1C_HUMAN Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5
SV=2
Length = 201
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
C +KL+L+G+S VGKS L+LRF + E STIG
Sbjct: 7 CLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIG 42
>sp|P17608|RYH1_SCHPO GTP-binding protein ryh1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ryh1 PE=1 SV=1
Length = 201
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
++KLV LGE +VGK+SL+ RF+ QF ++TIG
Sbjct: 11 KFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIG 45
>sp|Q8CG50|RAB43_MOUSE Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1
Length = 210
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 19 PNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
P DQ + +KLVL+G+++VGK+ +V RF G F Q STIG
Sbjct: 6 PGDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIG 50
>sp|Q53B90|RAB43_RAT Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2
SV=1
Length = 210
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 19 PNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
P DQ + +KLVL+G+++VGK+ +V RF G F Q STIG
Sbjct: 6 PGDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIG 50
>sp|Q9LK99|RAA1G_ARATH Ras-related protein RABA1g OS=Arabidopsis thaliana GN=RABA1G PE=2
SV=1
Length = 217
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
YK+VL+G+S VGKS+L+ RF R +F +STIG
Sbjct: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG 47
>sp|P17610|YPT3_SCHPO GTP-binding protein ypt3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ypt3 PE=1 SV=1
Length = 214
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K VL+G+S VGKS+L++RF R +F+ +STIG
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIG 44
>sp|Q40521|RB11B_TOBAC Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2
SV=1
Length = 217
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KLVL+G+S VGKS+L+ RF R +F+ +STIG
Sbjct: 15 FKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIG 48
>sp|Q9SID8|RAH1D_ARATH Ras-related protein RABH1d OS=Arabidopsis thaliana GN=RABH1D PE=3
SV=1
Length = 207
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ + +YKLV LG+ +VGK+S++ RF+ +F ++TIG
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIG 43
>sp|Q9LFT9|RAH1E_ARATH Ras-related protein RABH1e OS=Arabidopsis thaliana GN=RABH1E PE=2
SV=1
Length = 207
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ + +YKLV LG+ +VGK+S++ RF+ +F ++TIG
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIG 43
>sp|O49513|RAA1E_ARATH Ras-related protein RABA1e OS=Arabidopsis thaliana GN=RABA1E PE=2
SV=1
Length = 217
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KLVL+G+S VGKS+L+ RF R +F +STIG
Sbjct: 14 FKLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIG 47
>sp|Q40191|RB11A_LOTJA Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1
Length = 226
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+SAVGKS ++ RF R +F +STIG
Sbjct: 18 FKVVLIGDSAVGKSQILARFARNEFSLDSKSTIG 51
>sp|Q17QU4|RB39B_BOVIN Ras-related protein Rab-39B OS=Bos taurus GN=RAB39B PE=2 SV=1
Length = 213
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q++L+++G+S VGKS L+ RF G+F + + T+G
Sbjct: 8 QFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVG 42
>sp|Q8BHC1|RB39B_MOUSE Ras-related protein Rab-39B OS=Mus musculus GN=Rab39b PE=2 SV=1
Length = 213
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q++L+++G+S VGKS L+ RF G+F + + T+G
Sbjct: 8 QFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVG 42
>sp|Q96DA2|RB39B_HUMAN Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1
Length = 213
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
Q++L+++G+S VGKS L+ RF G+F + + T+G
Sbjct: 8 QFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVG 42
>sp|Q550H6|RB11C_DICDI Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C
PE=1 SV=1
Length = 224
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 28/34 (82%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+V++G+SAVGKS+L+ RF R +F E ++TIG
Sbjct: 11 FKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIG 44
>sp|Q40195|RB11E_LOTJA Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1
Length = 218
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KLVL+G+S VGKS+L+ RF R +F+ +STIG
Sbjct: 14 FKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 47
>sp|P36412|RB11A_DICDI Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A
PE=1 SV=1
Length = 214
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
YK+VL+G+S VGKS+L+ RF R +F +STIG
Sbjct: 14 YKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIG 47
>sp|Q86YS6|RAB43_HUMAN Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1
Length = 212
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+KLVL+G+++VGK+ +V RF G F E Q STIG
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIG 52
>sp|Q22782|RAB6B_CAEEL Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2
PE=2 SV=1
Length = 205
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
++KLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 10 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 44
>sp|Q99260|YPT6_YEAST GTP-binding protein YPT6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT6 PE=1 SV=1
Length = 215
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+ +YK+V LGE VGK+SL+ RF+ F ++ ++TIG
Sbjct: 8 LTKYKIVFLGEQGVGKTSLITRFMYDTFDDHYQATIG 44
>sp|P22129|RB11B_DIPOM Ras-related protein Rab-11B OS=Diplobatis ommata PE=2 SV=1
Length = 218
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
+K+VL+G+S VGKS+L+ RF R +F+ +STIG
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 45
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,908,869
Number of Sequences: 539616
Number of extensions: 752700
Number of successful extensions: 4428
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3750
Number of HSP's gapped (non-prelim): 686
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)