Query psy1356
Match_columns 69
No_of_seqs 156 out of 1174
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 22:20:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.4 1.6E-13 5.3E-18 85.2 2.9 41 27-67 11-51 (216)
2 2oil_A CATX-8, RAS-related pro 99.1 6.1E-11 2.1E-15 70.5 4.5 45 23-67 19-63 (193)
3 3c5c_A RAS-like protein 12; GD 99.1 8.3E-11 2.8E-15 70.1 4.4 43 25-67 17-59 (187)
4 2hup_A RAS-related protein RAB 99.1 7.4E-11 2.5E-15 71.2 3.1 45 23-67 23-67 (201)
5 3q3j_B RHO-related GTP-binding 99.1 1.5E-10 5E-15 70.6 4.3 45 23-67 21-65 (214)
6 2a5j_A RAS-related protein RAB 99.1 1.7E-10 5.7E-15 68.7 4.3 43 25-67 17-59 (191)
7 2gf9_A RAS-related protein RAB 99.0 3.1E-10 1.1E-14 67.3 4.7 43 25-67 18-60 (189)
8 1gwn_A RHO-related GTP-binding 99.0 2.9E-10 1E-14 69.1 4.1 43 25-67 24-66 (205)
9 2f7s_A C25KG, RAS-related prot 99.0 3.1E-10 1.1E-14 68.6 4.0 44 24-67 20-63 (217)
10 3reg_A RHO-like small GTPase; 99.0 4.7E-10 1.6E-14 66.8 4.7 44 25-68 19-62 (194)
11 2ew1_A RAS-related protein RAB 99.0 3.7E-10 1.3E-14 68.5 4.1 43 25-67 22-64 (201)
12 3ihw_A Centg3; RAS, centaurin, 99.0 4.5E-10 1.5E-14 67.0 4.1 41 25-66 16-56 (184)
13 2atx_A Small GTP binding prote 99.0 3.9E-10 1.3E-14 67.0 3.7 42 26-67 15-56 (194)
14 1oix_A RAS-related protein RAB 99.0 5.2E-10 1.8E-14 67.0 4.2 43 25-67 25-67 (191)
15 2il1_A RAB12; G-protein, GDP, 99.0 3.7E-10 1.3E-14 67.4 3.6 45 23-67 20-64 (192)
16 3dz8_A RAS-related protein RAB 99.0 8E-11 2.7E-15 70.1 0.5 45 23-67 17-61 (191)
17 3bc1_A RAS-related protein RAB 99.0 8E-10 2.7E-14 64.9 4.5 43 25-67 7-49 (195)
18 1zd9_A ADP-ribosylation factor 98.9 8E-10 2.8E-14 65.7 4.5 41 27-67 20-60 (188)
19 3oes_A GTPase rhebl1; small GT 98.9 6.8E-10 2.3E-14 66.6 3.9 43 25-67 20-62 (201)
20 4bas_A ADP-ribosylation factor 98.9 7.7E-10 2.6E-14 65.6 4.1 44 24-67 12-56 (199)
21 2q3h_A RAS homolog gene family 98.9 6.1E-10 2.1E-14 66.5 3.4 43 25-67 16-58 (201)
22 2iwr_A Centaurin gamma 1; ANK 98.9 4.1E-10 1.4E-14 65.9 2.6 39 28-67 6-44 (178)
23 1z06_A RAS-related protein RAB 98.9 8E-10 2.7E-14 65.5 3.8 42 26-67 17-58 (189)
24 2gco_A H9, RHO-related GTP-bin 98.9 1.3E-09 4.3E-14 65.5 4.8 42 26-67 22-63 (201)
25 1z08_A RAS-related protein RAB 98.9 1.1E-09 3.6E-14 63.4 4.3 42 26-67 3-44 (170)
26 1m7b_A RND3/RHOE small GTP-bin 98.9 9.7E-10 3.3E-14 65.0 4.1 42 26-67 4-45 (184)
27 1z2a_A RAS-related protein RAB 98.9 8.3E-10 2.9E-14 63.6 3.7 41 27-67 3-43 (168)
28 2o52_A RAS-related protein RAB 98.9 6E-10 2E-14 67.0 2.9 45 23-67 19-63 (200)
29 2zej_A Dardarin, leucine-rich 98.9 7E-10 2.4E-14 65.8 3.2 39 29-67 2-42 (184)
30 3clv_A RAB5 protein, putative; 98.9 1.1E-09 3.7E-14 64.5 4.0 41 27-67 5-45 (208)
31 2a9k_A RAS-related protein RAL 98.9 1.3E-09 4.5E-14 63.7 4.3 42 26-67 15-56 (187)
32 2efe_B Small GTP-binding prote 98.9 1.1E-09 3.9E-14 63.9 4.0 44 24-67 7-50 (181)
33 1zbd_A Rabphilin-3A; G protein 98.9 1.8E-09 6.2E-14 64.5 4.9 42 26-67 5-46 (203)
34 2fg5_A RAB-22B, RAS-related pr 98.9 1.2E-09 4.1E-14 65.1 4.1 44 24-67 18-61 (192)
35 1z0f_A RAB14, member RAS oncog 98.9 1.4E-09 4.8E-14 63.2 4.1 43 25-67 11-53 (179)
36 2f9l_A RAB11B, member RAS onco 98.9 1.2E-09 4.1E-14 65.5 3.9 41 27-67 3-43 (199)
37 2bme_A RAB4A, RAS-related prot 98.9 1.8E-09 6.1E-14 63.4 4.5 42 26-67 7-48 (186)
38 1z0j_A RAB-22, RAS-related pro 98.9 1.9E-09 6.4E-14 62.2 4.4 41 27-67 4-44 (170)
39 2fu5_C RAS-related protein RAB 98.9 4.8E-10 1.6E-14 65.9 1.8 42 26-67 5-46 (183)
40 2j1l_A RHO-related GTP-binding 98.9 9.7E-10 3.3E-14 66.8 3.3 42 26-67 31-72 (214)
41 3tkl_A RAS-related protein RAB 98.9 2E-09 6.7E-14 63.7 4.5 43 25-67 12-54 (196)
42 2hxs_A RAB-26, RAS-related pro 98.9 4.6E-10 1.6E-14 65.5 1.6 41 27-67 4-44 (178)
43 1r2q_A RAS-related protein RAB 98.9 2E-09 7E-14 61.9 4.3 41 27-67 4-44 (170)
44 1c1y_A RAS-related protein RAP 98.9 2.3E-09 7.9E-14 61.6 4.5 39 29-67 3-41 (167)
45 3kkq_A RAS-related protein M-R 98.9 2.3E-09 7.8E-14 62.9 4.5 43 25-67 14-56 (183)
46 3tw8_B RAS-related protein RAB 98.9 2.3E-09 7.8E-14 62.4 4.3 43 25-67 5-47 (181)
47 1ek0_A Protein (GTP-binding pr 98.9 2.2E-09 7.7E-14 61.7 4.3 40 28-67 2-41 (170)
48 3bwd_D RAC-like GTP-binding pr 98.9 1.2E-09 3.9E-14 63.9 2.9 41 27-67 6-46 (182)
49 2fn4_A P23, RAS-related protei 98.9 2.3E-09 7.9E-14 62.3 4.2 41 27-67 7-47 (181)
50 1wms_A RAB-9, RAB9, RAS-relate 98.9 2E-09 6.7E-14 62.7 3.9 42 26-67 4-45 (177)
51 2p5s_A RAS and EF-hand domain 98.9 1.2E-09 4.1E-14 65.4 3.0 43 25-67 24-66 (199)
52 2bcg_Y Protein YP2, GTP-bindin 98.9 1.8E-09 6E-14 64.8 3.7 42 26-67 5-46 (206)
53 2j0v_A RAC-like GTP-binding pr 98.9 1.6E-09 5.5E-14 65.2 3.5 40 28-67 8-47 (212)
54 3l0i_B RAS-related protein RAB 98.9 6.1E-10 2.1E-14 66.7 1.6 42 26-67 30-71 (199)
55 4gzl_A RAS-related C3 botulinu 98.8 1.7E-09 5.9E-14 65.2 3.4 43 25-67 26-68 (204)
56 1x3s_A RAS-related protein RAB 98.8 3.1E-09 1.1E-13 62.7 4.4 42 26-67 12-53 (195)
57 2y8e_A RAB-protein 6, GH09086P 98.8 2.8E-09 9.6E-14 61.9 4.1 41 27-67 12-52 (179)
58 2atv_A RERG, RAS-like estrogen 98.8 2.9E-09 9.9E-14 63.5 4.2 41 27-67 26-66 (196)
59 3t5g_A GTP-binding protein RHE 98.8 2.6E-09 9E-14 62.6 3.9 41 27-67 4-44 (181)
60 1ky3_A GTP-binding protein YPT 98.8 2.1E-09 7.2E-14 62.6 3.3 42 26-67 5-46 (182)
61 1g16_A RAS-related protein SEC 98.8 1.9E-09 6.4E-14 62.2 3.0 40 28-67 2-41 (170)
62 2g6b_A RAS-related protein RAB 98.8 3.7E-09 1.3E-13 61.7 4.3 43 25-67 6-49 (180)
63 1vg8_A RAS-related protein RAB 98.8 3.6E-09 1.2E-13 63.1 4.3 42 26-67 5-46 (207)
64 3cpj_B GTP-binding protein YPT 98.8 2.4E-09 8.4E-14 65.2 3.6 42 26-67 10-51 (223)
65 2erx_A GTP-binding protein DI- 98.8 5.3E-09 1.8E-13 60.3 4.6 39 29-67 3-41 (172)
66 1mh1_A RAC1; GTP-binding, GTPa 98.8 3.7E-09 1.3E-13 61.8 3.9 40 28-67 4-43 (186)
67 3t1o_A Gliding protein MGLA; G 98.8 2.4E-09 8.2E-14 63.1 2.8 42 25-67 10-62 (198)
68 1kao_A RAP2A; GTP-binding prot 98.8 4.8E-09 1.6E-13 60.1 4.0 39 29-67 3-41 (167)
69 1u8z_A RAS-related protein RAL 98.8 6.1E-09 2.1E-13 59.7 4.3 40 28-67 3-42 (168)
70 2bov_A RAla, RAS-related prote 98.8 6.4E-09 2.2E-13 61.9 4.4 41 27-67 12-52 (206)
71 3gj0_A GTP-binding nuclear pro 98.8 2.1E-09 7.3E-14 65.2 2.3 43 25-67 11-53 (221)
72 2fv8_A H6, RHO-related GTP-bin 98.8 4.6E-09 1.6E-13 63.3 3.6 41 27-67 23-63 (207)
73 2yc2_C IFT27, small RAB-relate 98.8 1.8E-09 6E-14 64.3 1.4 41 27-67 18-60 (208)
74 2gf0_A GTP-binding protein DI- 98.8 7.1E-09 2.4E-13 61.4 3.9 40 28-67 7-46 (199)
75 3cph_A RAS-related protein SEC 98.8 6.2E-09 2.1E-13 62.3 3.6 42 26-67 17-58 (213)
76 3c5h_A Glucocorticoid receptor 98.7 3.7E-09 1.3E-13 66.3 2.4 43 25-67 15-70 (255)
77 2h17_A ADP-ribosylation factor 98.7 2.5E-09 8.5E-14 63.1 1.5 41 25-66 17-57 (181)
78 2h57_A ADP-ribosylation factor 98.7 7.7E-09 2.6E-13 61.3 3.5 41 26-66 18-59 (190)
79 2g3y_A GTP-binding protein GEM 98.7 7.1E-09 2.4E-13 63.8 3.4 41 25-66 33-75 (211)
80 3con_A GTPase NRAS; structural 98.7 1.4E-08 4.7E-13 60.0 4.5 41 27-67 19-59 (190)
81 4dsu_A GTPase KRAS, isoform 2B 98.7 1.6E-08 5.6E-13 59.2 4.5 40 28-67 3-42 (189)
82 3cbq_A GTP-binding protein REM 98.7 5.9E-09 2E-13 62.6 2.6 41 25-65 19-59 (195)
83 2ce2_X GTPase HRAS; signaling 98.7 1.5E-08 5.2E-13 57.8 3.9 39 29-67 3-41 (166)
84 4djt_A GTP-binding nuclear pro 98.7 9.7E-09 3.3E-13 62.0 3.1 42 26-67 8-49 (218)
85 3llu_A RAS-related GTP-binding 98.6 1E-08 3.5E-13 61.3 2.2 41 23-66 14-54 (196)
86 1ksh_A ARF-like protein 2; sma 98.6 3.1E-08 1.1E-12 58.2 4.2 39 27-66 16-54 (186)
87 1r8s_A ADP-ribosylation factor 98.6 1.5E-08 5E-13 58.3 2.6 35 30-65 1-35 (164)
88 3th5_A RAS-related C3 botulinu 98.1 3.7E-09 1.3E-13 63.4 0.0 42 26-67 27-68 (204)
89 2cjw_A GTP-binding protein GEM 98.6 2E-08 6.7E-13 60.2 3.0 38 28-66 5-44 (192)
90 1upt_A ARL1, ADP-ribosylation 98.6 3.6E-08 1.2E-12 56.9 4.0 38 28-66 6-43 (171)
91 2lkc_A Translation initiation 98.6 2.3E-08 7.8E-13 58.2 3.0 39 28-66 7-45 (178)
92 2fh5_B SR-beta, signal recogni 98.6 3.5E-08 1.2E-12 59.4 3.9 36 27-62 5-40 (214)
93 1zj6_A ADP-ribosylation factor 98.6 1.6E-08 5.4E-13 59.8 2.1 38 27-65 14-51 (187)
94 2nzj_A GTP-binding protein REM 98.6 3.7E-08 1.3E-12 57.0 3.4 38 28-66 3-40 (175)
95 3r7w_B Gtpase2, GTP-binding pr 98.6 3E-08 1E-12 65.4 3.2 37 31-67 1-40 (331)
96 1moz_A ARL1, ADP-ribosylation 98.5 2E-08 6.8E-13 58.7 1.6 38 27-65 16-53 (183)
97 2wji_A Ferrous iron transport 98.5 5.1E-08 1.8E-12 56.8 3.3 37 29-65 3-39 (165)
98 3q85_A GTP-binding protein REM 98.5 5.3E-08 1.8E-12 56.2 3.3 37 29-65 2-38 (169)
99 2cxx_A Probable GTP-binding pr 98.5 3.7E-08 1.3E-12 57.8 2.5 35 29-63 1-35 (190)
100 2wjg_A FEOB, ferrous iron tran 98.5 6.1E-08 2.1E-12 57.0 3.4 38 28-65 6-43 (188)
101 1fzq_A ADP-ribosylation factor 98.5 3.3E-08 1.1E-12 58.5 2.0 38 27-65 14-51 (181)
102 2b6h_A ADP-ribosylation factor 98.5 3.4E-08 1.2E-12 59.0 2.0 38 27-65 27-64 (192)
103 3dpu_A RAB family protein; roc 98.5 5.8E-08 2E-12 66.4 3.3 42 26-67 38-79 (535)
104 1m2o_B GTP-binding protein SAR 98.5 6.7E-08 2.3E-12 57.6 3.1 38 28-66 22-59 (190)
105 2wkq_A NPH1-1, RAS-related C3 98.5 7.6E-08 2.6E-12 61.0 3.5 40 28-67 154-193 (332)
106 2hf9_A Probable hydrogenase ni 98.5 3.8E-08 1.3E-12 59.7 1.9 40 28-67 37-76 (226)
107 1f6b_A SAR1; gtpases, N-termin 98.5 4.6E-08 1.6E-12 58.7 2.2 37 28-65 24-60 (198)
108 1nrj_B SR-beta, signal recogni 98.5 7E-08 2.4E-12 58.2 2.8 41 26-66 9-52 (218)
109 2x77_A ADP-ribosylation factor 98.5 4.4E-08 1.5E-12 57.8 1.7 38 27-65 20-57 (189)
110 3r7w_A Gtpase1, GTP-binding pr 98.4 1.9E-07 6.6E-12 60.0 4.3 40 28-67 2-44 (307)
111 3q72_A GTP-binding protein RAD 98.4 8.7E-08 3E-12 55.1 2.3 37 29-66 2-38 (166)
112 2ged_A SR-beta, signal recogni 98.4 1.1E-07 3.8E-12 56.1 2.7 40 27-66 46-88 (193)
113 3o47_A ADP-ribosylation factor 98.4 1.4E-07 4.7E-12 61.3 3.1 40 27-67 163-202 (329)
114 1svi_A GTP-binding protein YSX 98.4 1.1E-07 3.6E-12 56.2 2.2 38 27-64 21-58 (195)
115 3lvq_E ARF-GAP with SH3 domain 98.3 4.8E-07 1.6E-11 61.1 4.2 41 26-67 319-359 (497)
116 3pqc_A Probable GTP-binding pr 98.3 4.9E-07 1.7E-11 53.0 3.2 36 27-63 21-56 (195)
117 2qu8_A Putative nucleolar GTP- 98.3 4.8E-07 1.6E-11 55.2 3.0 29 27-55 27-55 (228)
118 3t5d_A Septin-7; GTP-binding p 98.3 4.5E-07 1.6E-11 57.2 2.9 42 26-67 5-54 (274)
119 3lxx_A GTPase IMAP family memb 98.2 1.1E-06 3.7E-11 54.1 3.4 35 26-60 26-60 (239)
120 1pui_A ENGB, probable GTP-bind 98.2 8.5E-07 2.9E-11 53.0 2.2 37 28-64 25-61 (210)
121 3k53_A Ferrous iron transport 98.1 1E-06 3.5E-11 55.4 2.5 38 29-66 3-40 (271)
122 2dyk_A GTP-binding protein; GT 98.1 1.6E-06 5.5E-11 49.3 2.9 26 30-55 2-27 (161)
123 3a1s_A Iron(II) transport prot 98.1 1.8E-06 6.3E-11 54.3 3.3 35 28-62 4-38 (258)
124 2gj8_A MNME, tRNA modification 98.0 3.4E-06 1.1E-10 49.5 3.0 26 29-54 4-29 (172)
125 3b1v_A Ferrous iron uptake tra 98.0 5.3E-06 1.8E-10 52.8 3.7 26 29-54 3-28 (272)
126 2xtp_A GTPase IMAP family memb 98.0 4.6E-06 1.6E-10 51.8 3.3 35 27-61 20-55 (260)
127 3i8s_A Ferrous iron transport 98.0 3.2E-06 1.1E-10 53.5 2.5 37 29-65 3-39 (274)
128 2qag_A Septin-2, protein NEDD5 98.0 5.1E-06 1.7E-10 54.7 3.5 41 26-66 34-83 (361)
129 3lxw_A GTPase IMAP family memb 97.9 8.1E-06 2.8E-10 50.9 3.2 30 27-56 19-48 (247)
130 3iby_A Ferrous iron transport 97.9 5.8E-06 2E-10 52.1 2.2 36 30-65 2-37 (256)
131 4dhe_A Probable GTP-binding pr 97.9 4E-06 1.4E-10 50.4 1.4 28 27-54 27-54 (223)
132 2qnr_A Septin-2, protein NEDD5 97.8 7.8E-06 2.7E-10 52.6 1.8 33 26-58 15-48 (301)
133 3def_A T7I23.11 protein; chlor 97.8 2E-05 7E-10 49.3 3.4 27 28-54 35-61 (262)
134 2qag_C Septin-7; cell cycle, c 97.7 3E-05 1E-09 52.3 4.3 30 26-55 28-57 (418)
135 2aka_B Dynamin-1; fusion prote 97.7 2E-05 6.9E-10 49.4 2.8 29 27-55 24-52 (299)
136 1h65_A Chloroplast outer envel 97.6 2.7E-05 9.4E-10 48.8 2.7 27 28-54 38-64 (270)
137 2hjg_A GTP-binding protein ENG 97.6 3E-05 1E-09 51.9 2.6 27 28-54 174-200 (436)
138 1s0u_A EIF-2-gamma, translatio 97.6 5.8E-05 2E-09 50.1 3.6 40 27-66 6-50 (408)
139 2wsm_A Hydrogenase expression/ 97.5 2.9E-05 1E-09 46.7 1.6 27 28-54 29-55 (221)
140 1kk1_A EIF2gamma; initiation o 97.5 0.00011 3.8E-09 48.7 4.1 40 27-66 8-52 (410)
141 1wf3_A GTP-binding protein; GT 97.5 7.4E-05 2.5E-09 48.0 3.1 28 28-55 6-33 (301)
142 1mky_A Probable GTP-binding pr 97.4 6.8E-05 2.3E-09 50.2 2.5 25 30-54 2-26 (439)
143 1mky_A Probable GTP-binding pr 97.4 9E-05 3.1E-09 49.6 2.8 27 28-54 179-205 (439)
144 4dcu_A GTP-binding protein ENG 97.4 6.2E-05 2.1E-09 50.6 1.9 27 29-55 23-49 (456)
145 3t34_A Dynamin-related protein 97.4 0.00013 4.3E-09 47.6 3.3 28 28-55 33-60 (360)
146 3iev_A GTP-binding protein ERA 97.4 0.00013 4.4E-09 46.8 3.3 31 25-55 6-36 (308)
147 3izy_P Translation initiation 97.3 3.4E-05 1.2E-09 53.5 -0.0 38 29-66 4-41 (537)
148 2x2e_A Dynamin-1; nitration, h 97.3 0.00012 4E-09 47.7 2.4 29 27-55 29-57 (353)
149 1jal_A YCHF protein; nucleotid 97.3 0.00013 4.4E-09 48.5 2.5 26 29-54 2-27 (363)
150 2hjg_A GTP-binding protein ENG 97.3 9.8E-05 3.4E-09 49.4 1.9 27 29-55 3-29 (436)
151 3qq5_A Small GTP-binding prote 97.2 0.00016 5.4E-09 48.8 2.5 29 26-54 31-59 (423)
152 3gee_A MNME, tRNA modification 97.2 0.00015 5E-09 49.5 2.3 25 29-53 233-257 (476)
153 4dcu_A GTP-binding protein ENG 97.2 0.00017 5.8E-09 48.4 2.3 27 27-53 193-219 (456)
154 3geh_A MNME, tRNA modification 97.2 0.00011 3.6E-09 50.1 1.3 27 28-54 223-249 (462)
155 1jwy_B Dynamin A GTPase domain 97.2 0.0002 6.7E-09 45.3 2.3 28 27-54 22-49 (315)
156 2ohf_A Protein OLA1, GTP-bindi 97.1 0.00018 6.3E-09 48.3 2.2 28 28-55 21-48 (396)
157 1ega_A Protein (GTP-binding pr 97.1 0.00032 1.1E-08 44.9 3.0 28 28-55 7-34 (301)
158 1wxq_A GTP-binding protein; st 97.1 0.00038 1.3E-08 46.5 3.2 25 30-54 1-25 (397)
159 2e87_A Hypothetical protein PH 97.1 0.0003 1E-08 45.8 2.6 28 28-55 166-193 (357)
160 3sjy_A Translation initiation 97.0 0.00047 1.6E-08 45.6 3.4 27 26-52 5-31 (403)
161 3sop_A Neuronal-specific septi 97.0 0.00028 9.4E-09 44.8 2.2 25 29-53 2-26 (270)
162 3cnl_A YLQF, putative uncharac 97.0 0.00033 1.1E-08 44.3 2.4 25 30-54 100-124 (262)
163 1lnz_A SPO0B-associated GTP-bi 97.0 0.00062 2.1E-08 44.7 3.6 24 30-53 159-182 (342)
164 3j2k_7 ERF3, eukaryotic polype 97.0 0.00099 3.4E-08 44.7 4.5 25 27-51 15-39 (439)
165 2qtf_A Protein HFLX, GTP-bindi 96.9 0.00034 1.2E-08 46.2 2.1 26 30-55 179-205 (364)
166 1ye8_A Protein THEP1, hypothet 96.9 0.0005 1.7E-08 41.1 2.3 22 30-51 1-22 (178)
167 1kgd_A CASK, peripheral plasma 96.9 0.00049 1.7E-08 40.6 2.2 21 31-51 7-27 (180)
168 1xzp_A Probable tRNA modificat 96.9 0.00017 6E-09 49.3 0.1 25 30-54 244-268 (482)
169 1lvg_A Guanylate kinase, GMP k 96.8 0.00061 2.1E-08 41.0 2.2 21 31-51 6-26 (198)
170 2qpt_A EH domain-containing pr 96.8 0.0012 4.1E-08 45.7 3.8 29 27-55 63-91 (550)
171 1ex7_A Guanylate kinase; subst 96.8 0.00073 2.5E-08 41.0 2.3 20 32-51 4-23 (186)
172 2j69_A Bacterial dynamin-like 96.6 0.0015 5.2E-08 46.3 3.6 27 28-54 68-94 (695)
173 1puj_A YLQF, conserved hypothe 96.6 0.001 3.5E-08 42.4 2.4 26 28-53 119-144 (282)
174 3a00_A Guanylate kinase, GMP k 96.6 0.00098 3.3E-08 39.5 2.1 20 32-51 4-23 (186)
175 1s96_A Guanylate kinase, GMP k 96.6 0.001 3.5E-08 41.0 2.1 21 31-51 18-38 (219)
176 1ni3_A YCHF GTPase, YCHF GTP-b 96.6 0.0011 3.9E-08 44.3 2.4 27 28-54 19-45 (392)
177 3ney_A 55 kDa erythrocyte memb 96.6 0.0011 3.8E-08 40.6 2.2 21 31-51 21-41 (197)
178 1wb1_A Translation elongation 96.5 0.0016 5.4E-08 44.3 3.1 26 28-53 18-43 (482)
179 3tr0_A Guanylate kinase, GMP k 96.5 0.0012 4.1E-08 39.1 2.1 21 31-51 9-29 (205)
180 3izq_1 HBS1P, elongation facto 96.5 0.0013 4.5E-08 46.0 2.6 26 27-52 165-190 (611)
181 3p26_A Elongation factor 1 alp 96.5 0.001 3.5E-08 45.1 1.9 26 27-52 31-56 (483)
182 1znw_A Guanylate kinase, GMP k 96.5 0.0012 4.3E-08 39.6 2.1 21 31-51 22-42 (207)
183 4gp7_A Metallophosphoesterase; 96.5 0.0012 4.3E-08 38.7 2.1 19 31-49 11-29 (171)
184 1g7s_A Translation initiation 96.5 0.0012 4.1E-08 46.2 2.2 28 28-55 4-31 (594)
185 3mca_A HBS1, elongation factor 96.5 0.0031 1E-07 44.0 4.2 24 27-50 175-198 (592)
186 2dby_A GTP-binding protein; GD 96.5 0.0012 4.1E-08 43.8 2.1 24 30-53 2-25 (368)
187 1z6g_A Guanylate kinase; struc 96.5 0.0013 4.6E-08 40.0 2.1 21 31-51 25-45 (218)
188 3tau_A Guanylate kinase, GMP k 96.5 0.0014 4.7E-08 39.6 2.1 22 31-52 10-31 (208)
189 1jbk_A CLPB protein; beta barr 96.4 0.0015 5.1E-08 37.4 2.1 22 30-51 44-65 (195)
190 1zun_B Sulfate adenylate trans 96.4 0.0021 7.1E-08 43.0 2.9 26 27-52 22-47 (434)
191 1zp6_A Hypothetical protein AT 96.4 0.0015 5E-08 38.3 2.0 22 31-52 11-32 (191)
192 2qag_B Septin-6, protein NEDD5 96.3 0.0021 7.2E-08 43.6 2.6 26 29-54 42-67 (427)
193 1zo1_I IF2, translation initia 96.3 0.0012 4.3E-08 45.4 1.4 31 28-58 3-33 (501)
194 1jny_A EF-1-alpha, elongation 96.3 0.0022 7.5E-08 42.9 2.5 25 28-52 5-29 (435)
195 2c78_A Elongation factor TU-A; 96.2 0.0028 9.4E-08 41.9 2.7 25 27-51 9-33 (405)
196 2ehv_A Hypothetical protein PH 96.2 0.0025 8.4E-08 38.6 2.3 20 31-50 32-51 (251)
197 2qor_A Guanylate kinase; phosp 96.2 0.0023 7.8E-08 38.3 2.1 22 30-51 13-34 (204)
198 1d2e_A Elongation factor TU (E 96.2 0.0028 9.6E-08 41.9 2.7 24 29-52 3-26 (397)
199 3c8u_A Fructokinase; YP_612366 96.2 0.0028 9.4E-08 38.1 2.3 23 29-51 22-44 (208)
200 1htw_A HI0065; nucleotide-bind 96.1 0.0027 9.1E-08 37.4 2.1 22 31-52 35-56 (158)
201 3ec2_A DNA replication protein 96.1 0.0021 7.3E-08 37.5 1.6 22 30-51 39-60 (180)
202 2p65_A Hypothetical protein PF 96.1 0.0019 6.4E-08 37.1 1.3 22 30-51 44-65 (187)
203 2www_A Methylmalonic aciduria 96.1 0.0031 1.1E-07 41.2 2.5 23 29-51 74-96 (349)
204 3kb2_A SPBC2 prophage-derived 96.1 0.0028 9.7E-08 36.2 2.1 21 31-51 3-23 (173)
205 4a74_A DNA repair and recombin 96.1 0.0027 9.2E-08 37.9 1.9 21 31-51 27-47 (231)
206 2j41_A Guanylate kinase; GMP, 96.0 0.003 1E-07 37.2 2.1 22 31-52 8-29 (207)
207 3tif_A Uncharacterized ABC tra 96.0 0.0033 1.1E-07 39.0 2.3 22 31-52 33-54 (235)
208 1f60_A Elongation factor EEF1A 96.0 0.0035 1.2E-07 42.3 2.6 25 28-52 6-30 (458)
209 3fb4_A Adenylate kinase; psych 96.0 0.0035 1.2E-07 37.5 2.3 22 30-51 1-22 (216)
210 2bdt_A BH3686; alpha-beta prot 96.0 0.0034 1.1E-07 36.9 2.1 21 31-51 4-24 (189)
211 1kag_A SKI, shikimate kinase I 96.0 0.0035 1.2E-07 36.1 2.1 22 30-51 5-26 (173)
212 3dl0_A Adenylate kinase; phosp 96.0 0.0041 1.4E-07 37.3 2.4 22 30-51 1-22 (216)
213 3vaa_A Shikimate kinase, SK; s 96.0 0.0039 1.3E-07 37.1 2.3 22 30-51 26-47 (199)
214 2i3b_A HCR-ntpase, human cance 96.0 0.0036 1.2E-07 37.7 2.2 21 31-51 3-23 (189)
215 4eun_A Thermoresistant glucoki 96.0 0.0036 1.2E-07 37.3 2.1 22 30-51 30-51 (200)
216 1dar_A EF-G, elongation factor 95.9 0.0057 1.9E-07 43.4 3.4 26 26-51 9-34 (691)
217 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.004 1.4E-07 37.1 2.3 21 31-51 25-45 (235)
218 2bbw_A Adenylate kinase 4, AK4 95.9 0.0044 1.5E-07 38.0 2.5 21 30-50 28-48 (246)
219 3lnc_A Guanylate kinase, GMP k 95.9 0.003 1E-07 38.4 1.7 20 31-50 29-48 (231)
220 3bos_A Putative DNA replicatio 95.9 0.0038 1.3E-07 37.2 2.1 23 29-51 52-74 (242)
221 1njg_A DNA polymerase III subu 95.9 0.0039 1.3E-07 36.7 2.1 21 31-51 47-67 (250)
222 1qhx_A CPT, protein (chloramph 95.9 0.0042 1.4E-07 35.9 2.2 21 31-51 5-25 (178)
223 3lw7_A Adenylate kinase relate 95.9 0.0049 1.7E-07 35.0 2.4 20 30-49 2-21 (179)
224 3t61_A Gluconokinase; PSI-biol 95.9 0.004 1.4E-07 37.0 2.1 22 30-51 19-40 (202)
225 1b0u_A Histidine permease; ABC 95.9 0.0044 1.5E-07 39.0 2.4 21 32-52 35-55 (262)
226 2ff7_A Alpha-hemolysin translo 95.9 0.0048 1.6E-07 38.5 2.5 22 31-52 37-58 (247)
227 2chg_A Replication factor C sm 95.8 0.0043 1.5E-07 36.2 2.1 20 32-51 41-60 (226)
228 2jaq_A Deoxyguanosine kinase; 95.8 0.0048 1.6E-07 36.2 2.3 21 31-51 2-22 (205)
229 2elf_A Protein translation elo 95.8 0.003 1E-07 41.7 1.5 20 31-50 23-42 (370)
230 2cbz_A Multidrug resistance-as 95.8 0.0051 1.7E-07 38.2 2.5 22 31-52 33-54 (237)
231 1zcb_A G alpha I/13; GTP-bindi 95.8 0.0052 1.8E-07 40.6 2.6 24 26-49 30-53 (362)
232 1mv5_A LMRA, multidrug resista 95.8 0.0052 1.8E-07 38.2 2.5 22 31-52 30-51 (243)
233 2pcj_A ABC transporter, lipopr 95.8 0.0041 1.4E-07 38.2 2.0 21 32-52 33-53 (224)
234 3ohm_A Guanine nucleotide-bind 95.8 0.0059 2E-07 40.0 2.8 23 27-49 5-27 (327)
235 2xtz_A Guanine nucleotide-bind 95.8 0.0059 2E-07 40.2 2.8 23 27-49 7-29 (354)
236 3p32_A Probable GTPase RV1496/ 95.8 0.0055 1.9E-07 39.9 2.6 24 28-51 78-101 (355)
237 1bif_A 6-phosphofructo-2-kinas 95.8 0.0038 1.3E-07 42.0 1.9 26 27-52 37-62 (469)
238 3uie_A Adenylyl-sulfate kinase 95.8 0.0047 1.6E-07 36.8 2.1 22 30-51 26-47 (200)
239 3tr5_A RF-3, peptide chain rel 95.8 0.0033 1.1E-07 43.4 1.6 24 27-50 11-34 (528)
240 1lw7_A Transcriptional regulat 95.8 0.0036 1.2E-07 40.7 1.7 23 29-51 170-192 (365)
241 2onk_A Molybdate/tungstate ABC 95.8 0.0052 1.8E-07 38.3 2.4 22 31-52 26-47 (240)
242 2rcn_A Probable GTPase ENGC; Y 95.8 0.005 1.7E-07 40.8 2.4 24 31-54 217-240 (358)
243 2qen_A Walker-type ATPase; unk 95.7 0.0048 1.7E-07 38.8 2.2 22 31-52 33-54 (350)
244 4fid_A G protein alpha subunit 95.7 0.0049 1.7E-07 40.6 2.2 22 27-48 3-24 (340)
245 1g6h_A High-affinity branched- 95.7 0.0053 1.8E-07 38.4 2.3 22 31-52 35-56 (257)
246 3b85_A Phosphate starvation-in 95.7 0.0057 1.9E-07 37.4 2.4 22 31-52 24-45 (208)
247 1ixz_A ATP-dependent metallopr 95.7 0.0051 1.7E-07 37.7 2.2 20 32-51 52-71 (254)
248 2kjq_A DNAA-related protein; s 95.7 0.0049 1.7E-07 35.7 2.0 21 31-51 38-58 (149)
249 3gfo_A Cobalt import ATP-bindi 95.7 0.0056 1.9E-07 39.0 2.4 21 32-52 37-57 (275)
250 1ly1_A Polynucleotide kinase; 95.7 0.0055 1.9E-07 35.2 2.2 22 30-51 3-24 (181)
251 1knq_A Gluconate kinase; ALFA/ 95.7 0.0053 1.8E-07 35.5 2.1 21 30-50 9-29 (175)
252 1u0l_A Probable GTPase ENGC; p 95.7 0.0067 2.3E-07 38.7 2.7 23 31-53 171-193 (301)
253 1sgw_A Putative ABC transporte 95.7 0.0059 2E-07 37.5 2.4 22 31-52 37-58 (214)
254 1ji0_A ABC transporter; ATP bi 95.7 0.0057 2E-07 37.9 2.3 22 31-52 34-55 (240)
255 2ixe_A Antigen peptide transpo 95.7 0.0062 2.1E-07 38.6 2.5 22 31-52 47-68 (271)
256 2olj_A Amino acid ABC transpor 95.7 0.0058 2E-07 38.6 2.4 21 32-52 53-73 (263)
257 1n0w_A DNA repair protein RAD5 95.7 0.0059 2E-07 36.7 2.3 21 31-51 26-46 (243)
258 2pze_A Cystic fibrosis transme 95.7 0.0065 2.2E-07 37.4 2.5 22 31-52 36-57 (229)
259 2h5e_A Peptide chain release f 95.7 0.0057 2E-07 42.2 2.4 25 27-51 11-35 (529)
260 2zu0_C Probable ATP-dependent 95.7 0.006 2.1E-07 38.5 2.4 22 31-52 48-69 (267)
261 2ghi_A Transport protein; mult 95.7 0.0063 2.2E-07 38.2 2.5 22 31-52 48-69 (260)
262 2ihy_A ABC transporter, ATP-bi 95.7 0.0065 2.2E-07 38.7 2.5 22 31-52 49-70 (279)
263 1np6_A Molybdopterin-guanine d 95.7 0.0057 1.9E-07 36.5 2.1 22 30-51 7-28 (174)
264 2yv5_A YJEQ protein; hydrolase 95.7 0.0057 1.9E-07 39.2 2.3 21 30-50 166-186 (302)
265 2d2e_A SUFC protein; ABC-ATPas 95.7 0.0059 2E-07 38.1 2.3 22 31-52 31-52 (250)
266 4g1u_C Hemin import ATP-bindin 95.7 0.006 2E-07 38.6 2.3 21 32-52 40-60 (266)
267 2cvh_A DNA repair and recombin 95.6 0.0061 2.1E-07 36.1 2.3 21 31-51 22-42 (220)
268 2w58_A DNAI, primosome compone 95.6 0.0057 2E-07 36.2 2.1 22 30-51 55-76 (202)
269 2fna_A Conserved hypothetical 95.6 0.0045 1.5E-07 38.9 1.7 21 31-51 32-52 (357)
270 2qi9_C Vitamin B12 import ATP- 95.6 0.0063 2.2E-07 38.1 2.4 22 31-52 28-49 (249)
271 1cke_A CK, MSSA, protein (cyti 95.6 0.0065 2.2E-07 36.4 2.3 22 30-51 6-27 (227)
272 1nks_A Adenylate kinase; therm 95.6 0.0061 2.1E-07 35.4 2.1 21 31-51 3-23 (194)
273 3asz_A Uridine kinase; cytidin 95.6 0.0059 2E-07 36.4 2.1 22 30-51 7-28 (211)
274 2dy1_A Elongation factor G; tr 95.6 0.0067 2.3E-07 42.8 2.6 26 28-53 8-33 (665)
275 1ukz_A Uridylate kinase; trans 95.6 0.009 3.1E-07 35.3 2.9 22 29-50 15-36 (203)
276 3trf_A Shikimate kinase, SK; a 95.6 0.0068 2.3E-07 35.3 2.3 22 30-51 6-27 (185)
277 1tq4_A IIGP1, interferon-induc 95.6 0.0086 3E-07 40.3 3.0 23 31-53 71-93 (413)
278 2if2_A Dephospho-COA kinase; a 95.6 0.0058 2E-07 36.2 1.9 22 30-51 2-23 (204)
279 1cip_A Protein (guanine nucleo 95.6 0.0079 2.7E-07 39.6 2.7 24 26-49 29-52 (353)
280 1vpl_A ABC transporter, ATP-bi 95.5 0.007 2.4E-07 38.1 2.4 22 31-52 43-64 (256)
281 1yrb_A ATP(GTP)binding protein 95.5 0.011 3.7E-07 36.2 3.1 25 26-50 11-35 (262)
282 1kht_A Adenylate kinase; phosp 95.5 0.0076 2.6E-07 35.0 2.3 22 30-51 4-25 (192)
283 2yz2_A Putative ABC transporte 95.5 0.0071 2.4E-07 38.1 2.3 22 31-52 35-56 (266)
284 2pjz_A Hypothetical protein ST 95.5 0.0093 3.2E-07 37.7 2.8 23 31-53 32-54 (263)
285 1r5b_A Eukaryotic peptide chai 95.5 0.0054 1.8E-07 41.5 1.8 25 27-51 41-65 (467)
286 2eyu_A Twitching motility prot 95.5 0.0066 2.3E-07 38.2 2.1 21 31-51 27-47 (261)
287 2nq2_C Hypothetical ABC transp 95.5 0.0077 2.6E-07 37.8 2.3 22 31-52 33-54 (253)
288 1iy2_A ATP-dependent metallopr 95.4 0.0075 2.6E-07 37.6 2.2 20 32-51 76-95 (278)
289 2xex_A Elongation factor G; GT 95.4 0.0075 2.6E-07 42.7 2.3 25 27-51 8-32 (693)
290 1cr0_A DNA primase/helicase; R 95.4 0.0069 2.4E-07 38.0 1.9 22 31-52 37-58 (296)
291 2qby_A CDC6 homolog 1, cell di 95.4 0.0065 2.2E-07 38.6 1.8 22 30-51 46-67 (386)
292 2v9p_A Replication protein E1; 95.4 0.0082 2.8E-07 38.9 2.2 20 31-50 128-147 (305)
293 2gza_A Type IV secretion syste 95.3 0.0089 3.1E-07 39.2 2.4 23 30-52 176-198 (361)
294 3tlx_A Adenylate kinase 2; str 95.3 0.01 3.4E-07 36.7 2.5 24 28-51 28-51 (243)
295 3cm0_A Adenylate kinase; ATP-b 95.3 0.012 3.9E-07 34.3 2.6 22 30-51 5-26 (186)
296 1lv7_A FTSH; alpha/beta domain 95.3 0.0087 3E-07 36.7 2.1 21 31-51 47-67 (257)
297 2dr3_A UPF0273 protein PH0284; 95.3 0.0081 2.8E-07 36.2 1.9 21 31-51 25-45 (247)
298 1rj9_A FTSY, signal recognitio 95.3 0.0084 2.9E-07 38.6 2.1 21 30-50 103-123 (304)
299 1jjv_A Dephospho-COA kinase; P 95.3 0.012 4E-07 35.0 2.6 22 30-51 3-24 (206)
300 3sr0_A Adenylate kinase; phosp 95.3 0.0097 3.3E-07 36.3 2.3 22 30-51 1-22 (206)
301 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.0093 3.2E-07 36.3 2.2 21 31-51 41-61 (262)
302 3rlf_A Maltose/maltodextrin im 95.3 0.0095 3.2E-07 39.8 2.4 22 32-53 32-53 (381)
303 1udx_A The GTP-binding protein 95.3 0.0065 2.2E-07 40.9 1.6 23 31-53 159-181 (416)
304 2it1_A 362AA long hypothetical 95.3 0.0096 3.3E-07 39.4 2.4 21 32-52 32-52 (362)
305 1z47_A CYSA, putative ABC-tran 95.3 0.011 3.9E-07 39.0 2.7 22 31-52 43-64 (355)
306 1via_A Shikimate kinase; struc 95.3 0.0096 3.3E-07 34.5 2.1 21 31-51 6-26 (175)
307 1gvn_B Zeta; postsegregational 95.2 0.0099 3.4E-07 37.8 2.3 22 30-51 34-55 (287)
308 1g29_1 MALK, maltose transport 95.2 0.0095 3.2E-07 39.5 2.3 21 32-52 32-52 (372)
309 3fvq_A Fe(3+) IONS import ATP- 95.2 0.0096 3.3E-07 39.5 2.3 22 32-53 33-54 (359)
310 2cdn_A Adenylate kinase; phosp 95.2 0.012 4E-07 34.9 2.5 24 28-51 19-42 (201)
311 1e4v_A Adenylate kinase; trans 95.2 0.0085 2.9E-07 35.9 1.9 22 30-51 1-22 (214)
312 2rhm_A Putative kinase; P-loop 95.2 0.0096 3.3E-07 34.7 2.1 22 30-51 6-27 (193)
313 3h4m_A Proteasome-activating n 95.2 0.0092 3.2E-07 37.0 2.1 22 30-51 52-73 (285)
314 2yyz_A Sugar ABC transporter, 95.2 0.0099 3.4E-07 39.3 2.3 21 32-52 32-52 (359)
315 2bbs_A Cystic fibrosis transme 95.2 0.0093 3.2E-07 38.2 2.1 22 31-52 66-87 (290)
316 3iij_A Coilin-interacting nucl 95.2 0.011 3.8E-07 34.4 2.3 21 30-50 12-32 (180)
317 1v43_A Sugar-binding transport 95.2 0.01 3.5E-07 39.4 2.4 21 32-52 40-60 (372)
318 1in4_A RUVB, holliday junction 95.2 0.0096 3.3E-07 38.3 2.1 21 31-51 53-73 (334)
319 2pt5_A Shikimate kinase, SK; a 95.2 0.012 4E-07 33.7 2.3 22 30-51 1-22 (168)
320 1l8q_A Chromosomal replication 95.2 0.0093 3.2E-07 37.8 2.1 21 31-51 39-59 (324)
321 2f1r_A Molybdopterin-guanine d 95.2 0.0034 1.2E-07 37.4 0.0 21 31-51 4-24 (171)
322 3aez_A Pantothenate kinase; tr 95.2 0.0098 3.3E-07 38.4 2.1 23 29-51 90-112 (312)
323 3b9q_A Chloroplast SRP recepto 95.1 0.01 3.5E-07 38.2 2.1 22 30-51 101-122 (302)
324 1fnn_A CDC6P, cell division co 95.1 0.01 3.5E-07 37.9 2.2 22 31-52 46-67 (389)
325 2plr_A DTMP kinase, probable t 95.1 0.013 4.5E-07 34.4 2.5 22 30-51 5-26 (213)
326 3e70_C DPA, signal recognition 95.1 0.01 3.6E-07 38.6 2.2 23 29-51 129-151 (328)
327 2qm8_A GTPase/ATPase; G protei 95.1 0.011 3.9E-07 38.4 2.3 22 29-50 55-76 (337)
328 3n70_A Transport activator; si 95.1 0.012 4.3E-07 33.4 2.2 23 30-52 25-47 (145)
329 1ofh_A ATP-dependent HSL prote 95.1 0.011 3.8E-07 36.7 2.2 22 30-51 51-72 (310)
330 1nlf_A Regulatory protein REPA 95.1 0.0099 3.4E-07 37.1 1.9 21 31-51 32-52 (279)
331 3nh6_A ATP-binding cassette SU 95.0 0.0073 2.5E-07 39.1 1.3 21 31-51 82-102 (306)
332 1ak2_A Adenylate kinase isoenz 95.0 0.014 4.7E-07 35.6 2.4 23 29-51 16-38 (233)
333 2r8r_A Sensor protein; KDPD, P 95.0 0.015 5E-07 36.5 2.6 23 28-50 5-27 (228)
334 2x8a_A Nuclear valosin-contain 95.0 0.011 3.9E-07 37.2 2.1 20 32-51 47-66 (274)
335 3kta_A Chromosome segregation 95.0 0.011 3.8E-07 34.3 1.9 19 31-49 28-46 (182)
336 3b9p_A CG5977-PA, isoform A; A 95.0 0.011 3.9E-07 36.8 2.1 22 30-51 55-76 (297)
337 3szr_A Interferon-induced GTP- 95.0 0.009 3.1E-07 41.7 1.7 26 30-55 46-71 (608)
338 1n0u_A EF-2, elongation factor 95.0 0.011 3.7E-07 42.8 2.1 26 27-52 17-42 (842)
339 2qt1_A Nicotinamide riboside k 95.0 0.014 4.6E-07 34.7 2.3 23 29-51 21-43 (207)
340 1y63_A LMAJ004144AAA protein; 95.0 0.014 4.7E-07 34.3 2.3 22 30-51 11-32 (184)
341 2pt7_A CAG-ALFA; ATPase, prote 95.0 0.013 4.5E-07 38.0 2.3 23 31-53 173-195 (330)
342 1azs_C GS-alpha; complex (lyas 95.0 0.013 4.5E-07 39.3 2.4 23 26-48 37-59 (402)
343 1f5n_A Interferon-induced guan 95.0 0.02 6.7E-07 40.3 3.3 26 28-53 37-62 (592)
344 1aky_A Adenylate kinase; ATP:A 95.0 0.014 4.8E-07 35.1 2.3 22 30-51 5-26 (220)
345 3syl_A Protein CBBX; photosynt 94.9 0.011 3.6E-07 37.0 1.8 21 30-50 68-88 (309)
346 3tui_C Methionine import ATP-b 94.9 0.013 4.6E-07 38.9 2.4 22 32-53 57-78 (366)
347 1zd8_A GTP:AMP phosphotransfer 94.9 0.013 4.4E-07 35.5 2.1 22 30-51 8-29 (227)
348 1tev_A UMP-CMP kinase; ploop, 94.9 0.018 6.1E-07 33.4 2.6 21 30-50 4-24 (196)
349 1d2n_A N-ethylmaleimide-sensit 94.9 0.013 4.4E-07 36.3 2.1 23 29-51 64-86 (272)
350 2v1u_A Cell division control p 94.9 0.011 3.6E-07 37.7 1.7 22 30-51 45-66 (387)
351 3gd7_A Fusion complex of cysti 94.9 0.012 4.1E-07 39.3 1.9 21 31-51 49-69 (390)
352 2v54_A DTMP kinase, thymidylat 94.9 0.016 5.5E-07 34.1 2.3 23 30-52 5-27 (204)
353 1t9h_A YLOQ, probable GTPase E 94.8 0.0035 1.2E-07 40.7 -0.6 22 31-52 175-196 (307)
354 2xb4_A Adenylate kinase; ATP-b 94.8 0.017 5.7E-07 35.0 2.4 22 30-51 1-22 (223)
355 2z0h_A DTMP kinase, thymidylat 94.8 0.016 5.4E-07 33.8 2.3 21 31-51 2-22 (197)
356 2a5y_B CED-4; apoptosis; HET: 94.8 0.024 8.3E-07 38.7 3.4 22 30-51 153-174 (549)
357 2ze6_A Isopentenyl transferase 94.8 0.014 4.9E-07 36.2 2.2 20 31-50 3-22 (253)
358 1sxj_E Activator 1 40 kDa subu 94.8 0.014 4.7E-07 37.2 2.1 20 32-51 39-58 (354)
359 1zak_A Adenylate kinase; ATP:A 94.8 0.012 4.2E-07 35.4 1.7 22 30-51 6-27 (222)
360 1xjc_A MOBB protein homolog; s 94.8 0.017 5.8E-07 34.5 2.3 22 30-51 5-26 (169)
361 2vp4_A Deoxynucleoside kinase; 94.8 0.017 5.7E-07 35.2 2.3 23 29-51 20-42 (230)
362 3d31_A Sulfate/molybdate ABC t 94.7 0.011 3.8E-07 38.9 1.5 23 31-53 28-50 (348)
363 2jeo_A Uridine-cytidine kinase 94.7 0.018 6.2E-07 35.3 2.4 22 30-51 26-47 (245)
364 1odf_A YGR205W, hypothetical 3 94.7 0.018 6.2E-07 36.8 2.5 23 28-50 30-52 (290)
365 2zts_A Putative uncharacterize 94.7 0.017 6E-07 34.7 2.3 22 31-52 32-53 (251)
366 3co5_A Putative two-component 94.7 0.013 4.4E-07 33.3 1.6 22 30-51 28-49 (143)
367 2qmh_A HPR kinase/phosphorylas 94.7 0.021 7.3E-07 35.4 2.6 24 30-53 35-58 (205)
368 3pfi_A Holliday junction ATP-d 94.7 0.016 5.4E-07 36.8 2.1 21 31-51 57-77 (338)
369 2yhs_A FTSY, cell division pro 94.7 0.016 5.4E-07 40.2 2.2 22 30-51 294-315 (503)
370 2yvu_A Probable adenylyl-sulfa 94.7 0.018 6.1E-07 33.7 2.2 23 29-51 13-35 (186)
371 2og2_A Putative signal recogni 94.6 0.016 5.5E-07 38.3 2.1 22 30-51 158-179 (359)
372 4e22_A Cytidylate kinase; P-lo 94.6 0.018 6.2E-07 35.7 2.3 21 30-50 28-48 (252)
373 2pbr_A DTMP kinase, thymidylat 94.6 0.019 6.6E-07 33.3 2.2 21 31-51 2-22 (195)
374 1rz3_A Hypothetical protein rb 94.6 0.018 6.1E-07 34.4 2.1 23 29-51 22-44 (201)
375 1e6c_A Shikimate kinase; phosp 94.6 0.019 6.6E-07 32.8 2.2 22 30-51 3-24 (173)
376 3umf_A Adenylate kinase; rossm 94.6 0.023 7.8E-07 35.1 2.6 24 28-51 27-51 (217)
377 4fcw_A Chaperone protein CLPB; 94.6 0.018 6E-07 36.0 2.1 22 30-51 48-69 (311)
378 3be4_A Adenylate kinase; malar 94.6 0.019 6.3E-07 34.6 2.1 23 29-51 5-27 (217)
379 2obl_A ESCN; ATPase, hydrolase 94.6 0.016 5.4E-07 38.0 2.0 22 31-52 73-94 (347)
380 2qby_B CDC6 homolog 3, cell di 94.6 0.015 5.1E-07 37.2 1.8 21 31-51 47-67 (384)
381 1z6t_A APAF-1, apoptotic prote 94.5 0.02 6.9E-07 38.9 2.5 22 31-52 149-170 (591)
382 3uk6_A RUVB-like 2; hexameric 94.5 0.015 5.1E-07 37.2 1.7 21 31-51 72-92 (368)
383 2bwj_A Adenylate kinase 5; pho 94.5 0.018 6.1E-07 33.6 1.9 23 29-51 12-34 (199)
384 3pxg_A Negative regulator of g 94.5 0.018 6.2E-07 38.8 2.2 22 30-51 202-223 (468)
385 2rdo_7 EF-G, elongation factor 94.5 0.025 8.6E-07 40.2 3.0 25 27-51 8-32 (704)
386 1sxj_D Activator 1 41 kDa subu 94.5 0.019 6.4E-07 36.3 2.1 20 32-51 61-80 (353)
387 2bjv_A PSP operon transcriptio 94.5 0.02 6.7E-07 35.3 2.1 23 30-52 30-52 (265)
388 3ec1_A YQEH GTPase; atnos1, at 94.5 0.019 6.5E-07 37.7 2.2 24 29-52 162-185 (369)
389 3jvv_A Twitching mobility prot 94.5 0.019 6.3E-07 37.8 2.1 21 31-51 125-145 (356)
390 1qf9_A UMP/CMP kinase, protein 94.5 0.022 7.7E-07 32.9 2.3 22 30-51 7-28 (194)
391 2ewv_A Twitching motility prot 94.4 0.018 6.2E-07 37.9 2.1 21 31-51 138-158 (372)
392 2npi_A Protein CLP1; CLP1-PCF1 94.4 0.016 5.3E-07 39.4 1.7 21 31-51 140-160 (460)
393 1uf9_A TT1252 protein; P-loop, 94.4 0.022 7.5E-07 33.4 2.2 24 29-52 8-31 (203)
394 2c95_A Adenylate kinase 1; tra 94.4 0.021 7.1E-07 33.3 2.1 22 30-51 10-31 (196)
395 2iyv_A Shikimate kinase, SK; t 94.4 0.021 7E-07 33.2 2.1 22 30-51 3-24 (184)
396 2wwf_A Thymidilate kinase, put 94.4 0.019 6.4E-07 33.9 1.9 22 30-51 11-32 (212)
397 3cb4_D GTP-binding protein LEP 94.4 0.017 5.8E-07 40.5 1.9 24 28-51 3-26 (599)
398 3cf0_A Transitional endoplasmi 94.4 0.019 6.7E-07 36.3 2.1 21 31-51 51-71 (301)
399 1sxj_C Activator 1 40 kDa subu 94.4 0.019 6.6E-07 36.7 2.1 21 32-52 49-69 (340)
400 2ywe_A GTP-binding protein LEP 94.4 0.023 7.8E-07 39.9 2.5 24 28-51 5-28 (600)
401 2dpy_A FLII, flagellum-specifi 94.4 0.018 6.1E-07 38.9 2.0 22 31-52 159-180 (438)
402 3tqc_A Pantothenate kinase; bi 94.4 0.024 8.2E-07 37.0 2.5 22 29-50 92-113 (321)
403 1hqc_A RUVB; extended AAA-ATPa 94.4 0.015 5.2E-07 36.5 1.5 22 30-51 39-60 (324)
404 1oxx_K GLCV, glucose, ABC tran 94.4 0.0089 3E-07 39.4 0.4 21 32-52 34-54 (353)
405 1sq5_A Pantothenate kinase; P- 94.4 0.018 6E-07 36.8 1.8 22 30-51 81-102 (308)
406 2p5t_B PEZT; postsegregational 94.3 0.018 6.1E-07 35.6 1.7 23 29-51 32-54 (253)
407 3t15_A Ribulose bisphosphate c 94.3 0.018 6.2E-07 36.5 1.8 22 30-51 37-58 (293)
408 2qgz_A Helicase loader, putati 94.3 0.023 7.9E-07 36.4 2.3 22 30-51 153-174 (308)
409 3nwj_A ATSK2; P loop, shikimat 94.3 0.022 7.4E-07 35.8 2.1 22 30-51 49-70 (250)
410 3zvr_A Dynamin-1; hydrolase, D 94.3 0.022 7.6E-07 41.2 2.3 28 27-54 49-76 (772)
411 2pez_A Bifunctional 3'-phospho 94.2 0.03 1E-06 32.5 2.5 22 30-51 6-27 (179)
412 1um8_A ATP-dependent CLP prote 94.2 0.023 7.8E-07 36.8 2.2 22 30-51 73-94 (376)
413 1nn5_A Similar to deoxythymidy 94.2 0.023 8E-07 33.5 2.0 22 30-51 10-31 (215)
414 2oap_1 GSPE-2, type II secreti 94.2 0.022 7.7E-07 39.1 2.2 22 31-52 262-283 (511)
415 3lda_A DNA repair protein RAD5 94.2 0.02 6.9E-07 38.3 1.9 20 31-50 180-199 (400)
416 1nij_A Hypothetical protein YJ 94.2 0.02 6.8E-07 36.8 1.8 22 31-52 6-27 (318)
417 3tqf_A HPR(Ser) kinase; transf 94.2 0.023 7.7E-07 34.7 1.9 23 30-52 17-39 (181)
418 1yqt_A RNAse L inhibitor; ATP- 94.2 0.035 1.2E-06 38.3 3.1 23 31-53 49-71 (538)
419 1gtv_A TMK, thymidylate kinase 94.2 0.0065 2.2E-07 36.0 -0.5 20 31-50 2-21 (214)
420 2vli_A Antibiotic resistance p 94.2 0.024 8.1E-07 32.7 1.9 21 30-50 6-26 (183)
421 1tf7_A KAIC; homohexamer, hexa 94.2 0.021 7E-07 39.0 1.9 20 31-50 41-60 (525)
422 1g8p_A Magnesium-chelatase 38 94.1 0.017 5.7E-07 36.6 1.3 21 31-51 47-67 (350)
423 3b5x_A Lipid A export ATP-bind 94.1 0.032 1.1E-06 38.5 2.8 22 31-52 371-392 (582)
424 3eie_A Vacuolar protein sortin 94.1 0.024 8.2E-07 36.1 2.0 22 30-51 52-73 (322)
425 2yl4_A ATP-binding cassette SU 94.1 0.034 1.2E-06 38.5 2.9 22 31-52 372-393 (595)
426 1w5s_A Origin recognition comp 94.1 0.018 6.3E-07 37.0 1.4 20 32-51 53-74 (412)
427 2p67_A LAO/AO transport system 94.0 0.028 9.4E-07 36.4 2.2 22 29-50 56-77 (341)
428 3b60_A Lipid A export ATP-bind 94.0 0.031 1E-06 38.6 2.5 22 31-52 371-392 (582)
429 1pzn_A RAD51, DNA repair and r 94.0 0.024 8.1E-07 37.0 1.9 22 31-52 133-154 (349)
430 3a4m_A L-seryl-tRNA(SEC) kinas 94.0 0.03 1E-06 34.7 2.3 22 30-51 5-26 (260)
431 1m7g_A Adenylylsulfate kinase; 94.0 0.029 9.8E-07 33.6 2.1 21 30-50 26-46 (211)
432 1xwi_A SKD1 protein; VPS4B, AA 94.0 0.027 9.2E-07 36.2 2.1 22 30-51 46-67 (322)
433 3h2y_A GTPase family protein; 93.9 0.021 7.2E-07 37.5 1.5 24 29-52 160-183 (368)
434 3a8t_A Adenylate isopentenyltr 93.9 0.033 1.1E-06 36.8 2.4 21 31-51 42-62 (339)
435 3d8b_A Fidgetin-like protein 1 93.9 0.031 1.1E-06 36.3 2.3 22 30-51 118-139 (357)
436 1vht_A Dephospho-COA kinase; s 93.9 0.038 1.3E-06 33.0 2.6 22 30-51 5-26 (218)
437 3vfd_A Spastin; ATPase, microt 93.9 0.029 9.8E-07 36.7 2.1 22 30-51 149-170 (389)
438 4a9a_A Ribosome-interacting GT 93.9 0.02 6.8E-07 38.1 1.4 28 26-53 69-96 (376)
439 1jr3_A DNA polymerase III subu 93.9 0.031 1E-06 35.6 2.2 21 31-51 40-60 (373)
440 2r62_A Cell division protease 93.9 0.011 3.7E-07 36.4 0.0 20 32-51 47-66 (268)
441 1ltq_A Polynucleotide kinase; 93.8 0.032 1.1E-06 34.9 2.2 22 30-51 3-24 (301)
442 2z4s_A Chromosomal replication 93.8 0.029 9.8E-07 37.6 2.1 21 31-51 132-152 (440)
443 3qf4_B Uncharacterized ABC tra 93.8 0.044 1.5E-06 38.1 2.9 22 31-52 383-404 (598)
444 4a82_A Cystic fibrosis transme 93.7 0.041 1.4E-06 38.0 2.7 22 31-52 369-390 (578)
445 3avx_A Elongation factor TS, e 93.7 0.034 1.2E-06 42.3 2.5 26 27-52 294-319 (1289)
446 3bh0_A DNAB-like replicative h 93.7 0.036 1.2E-06 35.5 2.3 21 31-51 70-90 (315)
447 2px0_A Flagellar biosynthesis 93.7 0.03 1E-06 35.9 1.9 21 30-50 106-126 (296)
448 2r44_A Uncharacterized protein 93.7 0.02 6.7E-07 36.4 1.0 21 31-51 48-68 (331)
449 3euj_A Chromosome partition pr 93.7 0.033 1.1E-06 38.3 2.2 21 31-51 31-51 (483)
450 2qp9_X Vacuolar protein sortin 93.6 0.033 1.1E-06 36.2 2.1 21 31-51 86-106 (355)
451 1iqp_A RFCS; clamp loader, ext 93.6 0.037 1.3E-06 34.5 2.2 22 31-52 48-69 (327)
452 3pvs_A Replication-associated 93.6 0.034 1.2E-06 37.5 2.1 21 31-51 52-72 (447)
453 1uj2_A Uridine-cytidine kinase 93.6 0.046 1.6E-06 33.6 2.6 24 28-51 21-44 (252)
454 1p9r_A General secretion pathw 93.6 0.034 1.2E-06 37.4 2.1 21 31-51 169-189 (418)
455 3zvl_A Bifunctional polynucleo 93.5 0.041 1.4E-06 36.6 2.4 22 30-51 259-280 (416)
456 1sxj_B Activator 1 37 kDa subu 93.5 0.037 1.3E-06 34.4 2.1 21 32-52 45-65 (323)
457 1ko7_A HPR kinase/phosphatase; 93.5 0.034 1.2E-06 36.3 2.0 23 30-52 145-167 (314)
458 1vma_A Cell division protein F 93.5 0.041 1.4E-06 35.5 2.3 22 30-51 105-126 (306)
459 4eaq_A DTMP kinase, thymidylat 93.4 0.048 1.6E-06 33.5 2.5 23 29-51 26-48 (229)
460 3exa_A TRNA delta(2)-isopenten 93.4 0.042 1.4E-06 36.1 2.3 21 31-51 5-25 (322)
461 1tf7_A KAIC; homohexamer, hexa 93.4 0.032 1.1E-06 38.0 1.8 22 31-52 283-304 (525)
462 2chq_A Replication factor C sm 93.4 0.04 1.4E-06 34.2 2.1 20 32-51 41-60 (319)
463 3hws_A ATP-dependent CLP prote 93.4 0.041 1.4E-06 35.5 2.2 23 29-51 51-73 (363)
464 3r20_A Cytidylate kinase; stru 93.3 0.05 1.7E-06 33.9 2.5 22 29-50 9-30 (233)
465 1q3t_A Cytidylate kinase; nucl 93.3 0.054 1.8E-06 32.9 2.5 26 26-51 13-38 (236)
466 3qf4_A ABC transporter, ATP-bi 93.3 0.042 1.4E-06 38.1 2.2 22 31-52 371-392 (587)
467 1zuh_A Shikimate kinase; alpha 93.2 0.05 1.7E-06 31.2 2.2 23 29-51 7-29 (168)
468 3m6a_A ATP-dependent protease 93.2 0.041 1.4E-06 37.9 2.1 20 31-50 110-129 (543)
469 3ozx_A RNAse L inhibitor; ATP 93.2 0.061 2.1E-06 37.2 2.9 22 32-53 28-49 (538)
470 1sxj_A Activator 1 95 kDa subu 93.1 0.044 1.5E-06 37.3 2.1 22 30-51 78-99 (516)
471 1r6b_X CLPA protein; AAA+, N-t 93.1 0.044 1.5E-06 38.7 2.2 22 30-51 208-229 (758)
472 3bk7_A ABC transporter ATP-bin 93.1 0.067 2.3E-06 37.5 3.0 23 31-53 119-141 (607)
473 1f2t_A RAD50 ABC-ATPase; DNA d 93.1 0.058 2E-06 31.0 2.3 17 32-48 26-42 (149)
474 2r6a_A DNAB helicase, replicat 93.1 0.05 1.7E-06 36.4 2.3 22 31-52 205-226 (454)
475 3hr8_A Protein RECA; alpha and 93.0 0.043 1.5E-06 36.3 1.9 21 31-51 63-83 (356)
476 3crm_A TRNA delta(2)-isopenten 93.0 0.049 1.7E-06 35.6 2.1 21 31-51 7-27 (323)
477 3j16_B RLI1P; ribosome recycli 93.0 0.065 2.2E-06 37.6 2.9 22 31-52 105-126 (608)
478 2f6r_A COA synthase, bifunctio 93.0 0.083 2.8E-06 33.3 3.2 22 29-50 75-96 (281)
479 3pxi_A Negative regulator of g 93.0 0.048 1.6E-06 38.6 2.2 22 30-51 202-223 (758)
480 3foz_A TRNA delta(2)-isopenten 92.9 0.053 1.8E-06 35.6 2.1 21 31-51 12-32 (316)
481 1sky_E F1-ATPase, F1-ATP synth 92.9 0.058 2E-06 37.1 2.4 22 30-51 152-173 (473)
482 3d3q_A TRNA delta(2)-isopenten 92.8 0.053 1.8E-06 35.7 2.1 22 30-51 8-29 (340)
483 1ojl_A Transcriptional regulat 92.8 0.06 2E-06 34.3 2.3 22 30-51 26-47 (304)
484 1v5w_A DMC1, meiotic recombina 92.8 0.059 2E-06 34.9 2.3 22 31-52 124-145 (343)
485 3ozx_A RNAse L inhibitor; ATP 92.8 0.078 2.7E-06 36.6 2.9 22 32-53 297-318 (538)
486 1c9k_A COBU, adenosylcobinamid 92.7 0.05 1.7E-06 32.8 1.8 21 32-52 2-22 (180)
487 2zan_A Vacuolar protein sortin 92.7 0.055 1.9E-06 36.2 2.1 22 30-51 168-189 (444)
488 1yqt_A RNAse L inhibitor; ATP- 92.7 0.086 3E-06 36.3 3.1 23 31-53 314-336 (538)
489 1svm_A Large T antigen; AAA+ f 92.7 0.057 1.9E-06 35.9 2.1 20 31-50 171-190 (377)
490 2vhj_A Ntpase P4, P4; non- hyd 92.6 0.063 2.2E-06 35.4 2.3 21 32-52 126-146 (331)
491 3k1j_A LON protease, ATP-depen 92.6 0.06 2E-06 37.3 2.2 22 31-52 62-83 (604)
492 4f4c_A Multidrug resistance pr 92.5 0.067 2.3E-06 40.4 2.5 21 31-51 1107-1127(1321)
493 2zr9_A Protein RECA, recombina 92.5 0.057 2E-06 35.3 1.9 20 32-51 64-83 (349)
494 3ux8_A Excinuclease ABC, A sub 92.5 0.064 2.2E-06 37.6 2.2 18 31-48 350-367 (670)
495 2z43_A DNA repair and recombin 92.5 0.058 2E-06 34.6 1.9 21 31-51 109-129 (324)
496 3bk7_A ABC transporter ATP-bin 92.4 0.097 3.3E-06 36.7 3.1 22 32-53 385-406 (607)
497 2orw_A Thymidine kinase; TMTK, 92.4 0.063 2.2E-06 31.9 1.9 19 32-50 6-24 (184)
498 1qvr_A CLPB protein; coiled co 92.4 0.041 1.4E-06 39.6 1.2 21 31-51 193-213 (854)
499 3nbx_X ATPase RAVA; AAA+ ATPas 92.4 0.076 2.6E-06 36.5 2.5 22 30-51 42-63 (500)
500 2i1q_A DNA repair and recombin 92.3 0.062 2.1E-06 34.2 1.9 21 31-51 100-120 (322)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.38 E-value=1.6e-13 Score=85.20 Aligned_cols=41 Identities=41% Similarity=0.617 Sum_probs=27.9
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...|||++||+++||||||+.||+.+.|...|.||||++|.
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~ 51 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFL 51 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEE
Confidence 45799999999999999999999999999999999999875
No 2
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.12 E-value=6.1e-11 Score=70.48 Aligned_cols=45 Identities=38% Similarity=0.578 Sum_probs=39.6
Q ss_pred ccccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 23 ~~~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.......+||+++|+.++|||+|+.+++...|...+.+|++.+|.
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~ 63 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFS 63 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEE
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEE
Confidence 345667899999999999999999999999999889999988775
No 3
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.10 E-value=8.3e-11 Score=70.14 Aligned_cols=43 Identities=21% Similarity=0.384 Sum_probs=37.6
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.....+||+++|+.+||||+|+.+|+.+.|...|.+|++.+|.
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~ 59 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS 59 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee
Confidence 3456799999999999999999999999999999999998874
No 4
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.06 E-value=7.4e-11 Score=71.15 Aligned_cols=45 Identities=42% Similarity=0.569 Sum_probs=29.4
Q ss_pred ccccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 23 ~~~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+..+||+++|+.+||||+|+.+|+.+.|...+.+|++.+|.
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~ 67 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFT 67 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEE
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEE
Confidence 344567899999999999999999999999999889999998774
No 5
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.06 E-value=1.5e-10 Score=70.61 Aligned_cols=45 Identities=22% Similarity=0.328 Sum_probs=37.3
Q ss_pred ccccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 23 ~~~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.......+||+++|+.+||||+|+.+|+.+.|...|.||++.+|.
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~ 65 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT 65 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE
Confidence 344556899999999999999999999999999999999999875
No 6
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.05 E-value=1.7e-10 Score=68.69 Aligned_cols=43 Identities=30% Similarity=0.537 Sum_probs=33.8
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.....+||+++|+.++|||+|+.+|+.+.|...+.+|++.+|.
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 59 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG 59 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeE
Confidence 4557899999999999999999999999999888899887764
No 7
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.02 E-value=3.1e-10 Score=67.31 Aligned_cols=43 Identities=33% Similarity=0.487 Sum_probs=38.7
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
..+..+||+++|+.++|||+|+.+|+.+.|...+.+|++.+|.
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 60 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEE
Confidence 4567899999999999999999999999999889999988764
No 8
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.00 E-value=2.9e-10 Score=69.06 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=37.6
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.....+||+++|+.+||||+|+.+|+.+.|...|.||++.+|.
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~ 66 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT 66 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE
Confidence 3456899999999999999999999999999999999998874
No 9
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.00 E-value=3.1e-10 Score=68.57 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=39.3
Q ss_pred cccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 24 ~~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
..++..+||+++|+.++|||+|+.+|+.+.|...+.+|++.+|.
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~ 63 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFR 63 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEE
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEE
Confidence 34567899999999999999999999999999889999998874
No 10
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.99 E-value=4.7e-10 Score=66.78 Aligned_cols=44 Identities=27% Similarity=0.377 Sum_probs=38.7
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeeec
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKNN 68 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~~ 68 (69)
.....+||+++|+.+||||+|+.+|+.+.|...+.+|++.+|..
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~ 62 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH 62 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE
Confidence 34568999999999999999999999999999999999988753
No 11
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.99 E-value=3.7e-10 Score=68.50 Aligned_cols=43 Identities=40% Similarity=0.504 Sum_probs=39.2
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.++..+||+++|+.+||||+|+.+|+.+.|...+.+|++.+|.
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~ 64 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFM 64 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEE
Confidence 4567899999999999999999999999999889999998874
No 12
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.98 E-value=4.5e-10 Score=66.99 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=35.6
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIK 66 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f 66 (69)
.....+||+++|+++||||+|+.+|+.+.|...+.||.+ +|
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~ 56 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF 56 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE
Confidence 345679999999999999999999999999998988844 44
No 13
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=3.9e-10 Score=67.02 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=38.0
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+||+++|+.+||||+|+.+|+.+.|...+.+|++.+|.
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 56 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA 56 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE
Confidence 456799999999999999999999999999999999987764
No 14
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.97 E-value=5.2e-10 Score=67.04 Aligned_cols=43 Identities=42% Similarity=0.563 Sum_probs=38.7
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
..+..+|++++|++|+|||+|+.+++...|...+.||++.+|.
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~ 67 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFA 67 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEE
Confidence 3556899999999999999999999999999889999988774
No 15
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.97 E-value=3.7e-10 Score=67.42 Aligned_cols=45 Identities=29% Similarity=0.441 Sum_probs=31.3
Q ss_pred ccccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 23 ~~~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
+......+||+++|+.++|||+|+.+++.+.|...+.+|++.++.
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~ 64 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFK 64 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEE
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEE
Confidence 334567899999999999999999999999999888999987764
No 16
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=8e-11 Score=70.09 Aligned_cols=45 Identities=29% Similarity=0.417 Sum_probs=39.5
Q ss_pred ccccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 23 ~~~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+..+||+++|+.+||||+|+.+|+.+.|...+.+|++.++.
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 61 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFK 61 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEE
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEE
Confidence 345678899999999999999999999999999888888887664
No 17
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.95 E-value=8e-10 Score=64.89 Aligned_cols=43 Identities=28% Similarity=0.397 Sum_probs=39.1
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
..+..+||+++|+.++|||+|+.+++.+.|...+.+|++.+|.
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 49 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR 49 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee
Confidence 3567899999999999999999999999999889999998875
No 18
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.95 E-value=8e-10 Score=65.67 Aligned_cols=41 Identities=29% Similarity=0.330 Sum_probs=37.4
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...+||+++|+.++|||+|+.+|+.+.|...+.||++.++.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 60 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR 60 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE
Confidence 35799999999999999999999999999889999998774
No 19
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.94 E-value=6.8e-10 Score=66.58 Aligned_cols=43 Identities=35% Similarity=0.512 Sum_probs=37.2
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.....+||+++|+.+||||+|+.+|+.+.|...+.+|++..|.
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 62 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS 62 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEE
Confidence 3446899999999999999999999999999999999998763
No 20
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.94 E-value=7.7e-10 Score=65.63 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=33.8
Q ss_pred cccceeeeEEEECCCCCChhhhhhhhhcCccCC-cccCceeeeee
Q psy1356 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHE-YQESTIGGIKN 67 (69)
Q Consensus 24 ~~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~-~~~~Ti~~~f~ 67 (69)
......+||+++|+.+||||+|+.+|+.+.|.. .|.||++..+.
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~ 56 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE 56 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE
Confidence 455678999999999999999999999999998 89999986553
No 21
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.93 E-value=6.1e-10 Score=66.49 Aligned_cols=43 Identities=30% Similarity=0.285 Sum_probs=28.9
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.....+||+++|+.+||||+|+.+|+.+.|...|.+|++..|.
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~ 58 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS 58 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE
Confidence 3456799999999999999999999999999999999987764
No 22
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.93 E-value=4.1e-10 Score=65.89 Aligned_cols=39 Identities=33% Similarity=0.503 Sum_probs=35.3
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
..+||+++|+.+||||+|+.+|+.+.|.. +.||++..|.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~ 44 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYK 44 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEE
Confidence 46999999999999999999999999987 8899987764
No 23
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.93 E-value=8e-10 Score=65.51 Aligned_cols=42 Identities=36% Similarity=0.630 Sum_probs=36.9
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+||+++|+.++|||+|+.+|+.+.|...+.+|++.+|.
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 58 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFR 58 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEE
Confidence 345799999999999999999999999999989999988764
No 24
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.93 E-value=1.3e-09 Score=65.49 Aligned_cols=42 Identities=31% Similarity=0.406 Sum_probs=37.9
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+||+++|+.++|||+|+.+|+.+.|...|.||++.+|.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 63 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI 63 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE
Confidence 346799999999999999999999999999999999988764
No 25
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.92 E-value=1.1e-09 Score=63.38 Aligned_cols=42 Identities=40% Similarity=0.696 Sum_probs=37.5
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+||+++|+.++|||+|+.+++.+.|...+.+|++.+|.
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 44 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFL 44 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEE
Confidence 356799999999999999999999999999889999998765
No 26
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.92 E-value=9.7e-10 Score=65.02 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=37.2
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+||+++|+.+||||+|+.+|+.+.|...|.||++.+|.
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~ 45 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT 45 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE
Confidence 346799999999999999999999999999999999998774
No 27
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.92 E-value=8.3e-10 Score=63.59 Aligned_cols=41 Identities=37% Similarity=0.515 Sum_probs=36.7
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...+||+++|+.++|||+|+.+++.+.|...+.+|++.+|.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~ 43 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL 43 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEE
Confidence 45799999999999999999999999999999999987764
No 28
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.91 E-value=6e-10 Score=67.00 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=27.3
Q ss_pred ccccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 23 ~~~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...++..+||+++|+.++|||+|+.+|+.+.|...+.+|++.+|.
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~ 63 (200)
T 2o52_A 19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFG 63 (200)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEE
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeE
Confidence 334567899999999999999999999999999889999987764
No 29
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.91 E-value=7e-10 Score=65.83 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=26.7
Q ss_pred eeeEEEECCCCCChhhhhhhhhcC--ccCCcccCceeeeee
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRG--QFHEYQESTIGGIKN 67 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~--~f~~~~~~Ti~~~f~ 67 (69)
.+||+++|+++||||||+.+|+.. .|...+.+|++.+|.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~ 42 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVK 42 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeE
Confidence 489999999999999999999984 677788999998874
No 30
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.91 E-value=1.1e-09 Score=64.52 Aligned_cols=41 Identities=54% Similarity=0.767 Sum_probs=37.5
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...+||+++|+.++|||+|+.+++...|...+.+|++.+|.
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 45 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFC 45 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeE
Confidence 45799999999999999999999999999999999998764
No 31
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.91 E-value=1.3e-09 Score=63.69 Aligned_cols=42 Identities=31% Similarity=0.478 Sum_probs=36.7
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+||+++|+.++|||+|+.+++.+.|...+.+|++..+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 56 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR 56 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE
Confidence 345799999999999999999999999999999999887764
No 32
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.91 E-value=1.1e-09 Score=63.90 Aligned_cols=44 Identities=59% Similarity=0.756 Sum_probs=37.2
Q ss_pred cccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 24 ~~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
......+||+++|+.++|||+|+.+++.+.|...+.+|++.+|.
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~ 50 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFF 50 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEE
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEE
Confidence 34556799999999999999999999999999888899887664
No 33
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.90 E-value=1.8e-09 Score=64.49 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=38.2
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.+..+||+++|+.++|||+|+.+|+...|...+.+|++.+|.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 46 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 46 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE
Confidence 456899999999999999999999999999889999998774
No 34
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.90 E-value=1.2e-09 Score=65.10 Aligned_cols=44 Identities=41% Similarity=0.600 Sum_probs=37.9
Q ss_pred cccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 24 ~~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
..+...+||+++|+.++|||+|+.+|+.+.|...+.+|++.+|.
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~ 61 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFM 61 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEE
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEE
Confidence 34567899999999999999999999999999889999998764
No 35
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.90 E-value=1.4e-09 Score=63.19 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=38.2
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.....+||+++|+.++|||+|+.+++.+.|...+.+|++.++.
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 53 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFG 53 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE
Confidence 4556899999999999999999999999999889999887663
No 36
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.90 E-value=1.2e-09 Score=65.50 Aligned_cols=41 Identities=44% Similarity=0.608 Sum_probs=33.9
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
+..+|++++|++|+|||+|+.+++...|...+.||++.+|.
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~ 43 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFA 43 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEE
Confidence 45799999999999999999999999998888899886653
No 37
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.89 E-value=1.8e-09 Score=63.42 Aligned_cols=42 Identities=26% Similarity=0.465 Sum_probs=38.2
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.+..+||+++|+.++|||+|+.+|+.+.|...+.+|++.+|.
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~ 48 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFG 48 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE
Confidence 456899999999999999999999999999989999998764
No 38
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.89 E-value=1.9e-09 Score=62.21 Aligned_cols=41 Identities=39% Similarity=0.609 Sum_probs=37.3
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...+||+++|+.++|||+|+.+++...|...+.+|++.++.
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~ 44 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFM 44 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEE
Confidence 45799999999999999999999999999889999998764
No 39
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.89 E-value=4.8e-10 Score=65.88 Aligned_cols=42 Identities=36% Similarity=0.493 Sum_probs=22.6
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.+..+||+++|+.++|||+|+.+|+.+.|...+.||++.+|.
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~ 46 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFK 46 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE
Confidence 456899999999999999999999999999889999998774
No 40
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.89 E-value=9.7e-10 Score=66.76 Aligned_cols=42 Identities=31% Similarity=0.443 Sum_probs=30.7
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+||+++|+.+||||+|+.+|+.+.|...+.+|++..|.
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~ 72 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM 72 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEE
Confidence 345799999999999999999999999999999999987764
No 41
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.89 E-value=2e-09 Score=63.71 Aligned_cols=43 Identities=42% Similarity=0.540 Sum_probs=38.7
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.....+||+++|+.++|||+|+.+|+.+.|...+.++++.++.
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~ 54 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFK 54 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEE
Confidence 3457899999999999999999999999999999999988764
No 42
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.88 E-value=4.6e-10 Score=65.48 Aligned_cols=41 Identities=37% Similarity=0.443 Sum_probs=36.5
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...+||+++|+.++|||+|+.+|+.+.|...+.||++.+|.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~ 44 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFF 44 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEE
Confidence 35799999999999999999999999998888899987653
No 43
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.88 E-value=2e-09 Score=61.92 Aligned_cols=41 Identities=83% Similarity=1.214 Sum_probs=37.2
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...+||+++|+.++|||+|+.+++.+.|...+.+|++.+|.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~ 44 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFL 44 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE
Confidence 45799999999999999999999999999889999988764
No 44
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.88 E-value=2.3e-09 Score=61.64 Aligned_cols=39 Identities=46% Similarity=0.719 Sum_probs=36.2
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.+||+++|+.++|||+|+.+++.+.|...+.+|++..|.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 41 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR 41 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE
Confidence 589999999999999999999999999999999988765
No 45
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.87 E-value=2.3e-09 Score=62.92 Aligned_cols=43 Identities=33% Similarity=0.530 Sum_probs=38.6
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.....+||+++|+.++|||+|+.+|+.+.|...+.+|++.+|.
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~ 56 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYL 56 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeE
Confidence 3456899999999999999999999999999999999988764
No 46
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.87 E-value=2.3e-09 Score=62.39 Aligned_cols=43 Identities=40% Similarity=0.517 Sum_probs=35.4
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
..+..+||+++|+.++|||+|+.+++.+.|...+.+|++.++.
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~ 47 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFK 47 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEE
Confidence 3457899999999999999999999999999889999988764
No 47
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.87 E-value=2.2e-09 Score=61.75 Aligned_cols=40 Identities=60% Similarity=0.797 Sum_probs=36.4
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
..+||+++|+.++|||+|+.+++.+.|...+.||++.++.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~ 41 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFL 41 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE
Confidence 3689999999999999999999999999889999998764
No 48
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.86 E-value=1.2e-09 Score=63.94 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=27.8
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...+||+++|+.++|||+|+.+|+.+.|...+.||++..|.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~ 46 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS 46 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE
Confidence 34699999999999999999999999999999999987764
No 49
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.86 E-value=2.3e-09 Score=62.35 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=37.4
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...+||+++|+.++|||+|+.+++.+.|...+.+|++.+|.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 47 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT 47 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE
Confidence 35799999999999999999999999999999999998764
No 50
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.86 E-value=2e-09 Score=62.69 Aligned_cols=42 Identities=40% Similarity=0.533 Sum_probs=34.1
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+||+++|+.++|||+|+.+++.+.|...+.+|++.+|.
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~ 45 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFL 45 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE
Confidence 346799999999999999999999999999889999998763
No 51
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.86 E-value=1.2e-09 Score=65.43 Aligned_cols=43 Identities=37% Similarity=0.591 Sum_probs=27.4
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.....+||+++|+.++|||+|+.+++.+.|...+.+|++.+|.
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 66 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQ 66 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeE
Confidence 3456799999999999999999999999999889999987764
No 52
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.86 E-value=1.8e-09 Score=64.78 Aligned_cols=42 Identities=40% Similarity=0.502 Sum_probs=38.2
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.+..+||+++|+.++|||+|+.+|+.+.|...+.+|++.+|.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 46 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFK 46 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE
Confidence 456899999999999999999999999999999999988764
No 53
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.86 E-value=1.6e-09 Score=65.20 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=36.9
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
..+||+++|+.++|||+|+.+|+.+.|...|.||++.+|.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~ 47 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS 47 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE
Confidence 5799999999999999999999999999999999987764
No 54
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.85 E-value=6.1e-10 Score=66.70 Aligned_cols=42 Identities=43% Similarity=0.553 Sum_probs=37.3
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.+..+||+++|+.+||||+|+.+|+.+.|...+.+|++.++.
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~ 71 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFK 71 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEE
Confidence 457899999999999999999999999999888888887664
No 55
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.85 E-value=1.7e-09 Score=65.22 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=35.2
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.....+||+++|+.+||||+|+.+|+.+.|...+.+|++..+.
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~ 68 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS 68 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeE
Confidence 3456799999999999999999999999999999999987664
No 56
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.84 E-value=3.1e-09 Score=62.65 Aligned_cols=42 Identities=40% Similarity=0.580 Sum_probs=37.8
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+||+++|+.++|||+|+.+++...|...+.+|++.+|.
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 53 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFK 53 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEE
Confidence 345799999999999999999999999999999999988774
No 57
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.84 E-value=2.8e-09 Score=61.90 Aligned_cols=41 Identities=41% Similarity=0.617 Sum_probs=37.0
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...+||+++|+.++|||+|+.+++.+.|...+.+|++.+|.
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~ 52 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFL 52 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEE
Confidence 34699999999999999999999999999999999988764
No 58
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.84 E-value=2.9e-09 Score=63.50 Aligned_cols=41 Identities=32% Similarity=0.498 Sum_probs=37.2
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...+||+++|+.+||||+|+.+|+.+.|...+.+|++.+|.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~ 66 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR 66 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE
Confidence 45799999999999999999999999999999999998774
No 59
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.84 E-value=2.6e-09 Score=62.57 Aligned_cols=41 Identities=39% Similarity=0.549 Sum_probs=37.3
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...+||+++|+.++|||+|+.+|+.+.|...+.+|++..|.
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 44 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT 44 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEE
Confidence 35799999999999999999999999999999999998764
No 60
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.83 E-value=2.1e-09 Score=62.58 Aligned_cols=42 Identities=36% Similarity=0.548 Sum_probs=33.6
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+||+++|+.++|||+|+.+++.+.|...+.+|++.++.
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~ 46 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFL 46 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEE
Confidence 345799999999999999999999999999889999887654
No 61
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.83 E-value=1.9e-09 Score=62.20 Aligned_cols=40 Identities=40% Similarity=0.576 Sum_probs=29.9
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
..+||+++|+.++|||+|+.+++.+.|...+.+|++.+|.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~ 41 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 41 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEE
Confidence 4689999999999999999999999998889999987764
No 62
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.83 E-value=3.7e-09 Score=61.65 Aligned_cols=43 Identities=35% Similarity=0.465 Sum_probs=37.2
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccC-CcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFH-EYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~-~~~~~Ti~~~f~ 67 (69)
.....+||+++|+.++|||+|+.+|+.+.|. ..+.+|++.+|.
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~ 49 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFR 49 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEE
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEE
Confidence 3457899999999999999999999999885 578899988774
No 63
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.83 E-value=3.6e-09 Score=63.13 Aligned_cols=42 Identities=36% Similarity=0.530 Sum_probs=36.9
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+||+++|+.++|||+|+.+++...|...+.+|++.++.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 46 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL 46 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEE
Confidence 346799999999999999999999999999999999987764
No 64
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.4e-09 Score=65.22 Aligned_cols=42 Identities=40% Similarity=0.566 Sum_probs=32.7
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.+..+||+++|+.+||||+|+.+|+.+.|...+.+|++.+|.
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~ 51 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFA 51 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeE
Confidence 456899999999999999999999999999889999998775
No 65
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.81 E-value=5.3e-09 Score=60.26 Aligned_cols=39 Identities=44% Similarity=0.733 Sum_probs=35.8
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.+||+++|+.++|||+|+.+++.+.|...+.+|++..+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 41 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR 41 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE
Confidence 589999999999999999999999999889999887764
No 66
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.81 E-value=3.7e-09 Score=61.80 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=36.3
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
..+||+++|+.++|||+|+.+|+.+.|...+.+|++..|.
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~ 43 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS 43 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE
Confidence 4689999999999999999999999999999999987664
No 67
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.80 E-value=2.4e-09 Score=63.07 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=34.7
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcc-----------cCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQ-----------ESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~-----------~~Ti~~~f~ 67 (69)
.....+||+++|+.+||||+|+ +++.+.|...| .||++.+|.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 62 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFL 62 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEEC
T ss_pred ccccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeec
Confidence 4567899999999999999999 77777887764 568888775
No 68
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.80 E-value=4.8e-09 Score=60.08 Aligned_cols=39 Identities=44% Similarity=0.724 Sum_probs=35.3
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.+||+++|+.++|||+|+.+++.+.|...+.+|++..+.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~ 41 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYR 41 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEE
Confidence 589999999999999999999999999989999886653
No 69
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.79 E-value=6.1e-09 Score=59.67 Aligned_cols=40 Identities=33% Similarity=0.478 Sum_probs=36.3
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
..+||+++|+.++|||+|+.+++.+.|...+.+|++..+.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~ 42 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR 42 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE
Confidence 3689999999999999999999999999999999988764
No 70
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.79 E-value=6.4e-09 Score=61.90 Aligned_cols=41 Identities=32% Similarity=0.489 Sum_probs=37.1
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...+||+++|+.++|||+|+.+|+.+.|...+.+|++..|.
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 52 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR 52 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE
Confidence 35799999999999999999999999999999999988764
No 71
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.78 E-value=2.1e-09 Score=65.21 Aligned_cols=43 Identities=33% Similarity=0.558 Sum_probs=37.9
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.....+||+++|+.+||||+|+.+|+.+.|...+.+|++.++.
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~ 53 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH 53 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE
Confidence 4456799999999999999999999999999989999987654
No 72
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.78 E-value=4.6e-09 Score=63.29 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=30.8
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...+||+++|+.++|||+|+.+|+.+.|...+.||++.+|.
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 63 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV 63 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE
Confidence 45789999999999999999999999999989999988764
No 73
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.76 E-value=1.8e-09 Score=64.32 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=7.7
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcC--ccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRG--QFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~--~f~~~~~~Ti~~~f~ 67 (69)
...+||+++|+.++|||+|+.+|+.+ .|...+.+|++.+|.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~ 60 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVV 60 (208)
T ss_dssp EEEEEEEEC----------------------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEE
Confidence 46799999999999999999999999 899889999986653
No 74
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.76 E-value=7.1e-09 Score=61.39 Aligned_cols=40 Identities=45% Similarity=0.728 Sum_probs=36.4
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
..+||+++|+.++|||+|+.+++.+.|...+.+|++..|.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 46 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR 46 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee
Confidence 4699999999999999999999999999889999987764
No 75
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.75 E-value=6.2e-09 Score=62.33 Aligned_cols=42 Identities=38% Similarity=0.502 Sum_probs=36.0
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+||+++|+.++|||+|+.+++...|...+.+|++.+|.
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~ 58 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 58 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE
Confidence 445799999999999999999999999998889999987764
No 76
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.74 E-value=3.7e-09 Score=66.33 Aligned_cols=43 Identities=33% Similarity=0.427 Sum_probs=36.5
Q ss_pred ccceeeeEEEECCC---------CCChhhhhhhhhc---CccCCcccCce-eeeee
Q psy1356 25 AKICQYKLVLLGES---------AVGKSSLVLRFVR---GQFHEYQESTI-GGIKN 67 (69)
Q Consensus 25 ~~~~~~kv~~lG~~---------~vGKtsl~~~~~~---~~f~~~~~~Ti-~~~f~ 67 (69)
.....+||+++|++ +||||||+.+|+. +.|...+.||+ +++|.
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~ 70 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFG 70 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHT
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccc
Confidence 45567999999999 9999999999999 67888888886 66654
No 77
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.74 E-value=2.5e-09 Score=63.10 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=32.6
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIK 66 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f 66 (69)
.....+||+++|+.++|||+|+.+|+.+.| ..+.+|++..+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~ 57 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV 57 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee
Confidence 444679999999999999999999999988 56778887543
No 78
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.73 E-value=7.7e-09 Score=61.26 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=33.9
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCc-cCCcccCceeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQ-FHEYQESTIGGIK 66 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~-f~~~~~~Ti~~~f 66 (69)
....+||+++|+.++|||+|+.+|+... |...+.+|++...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~ 59 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSI 59 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeE
Confidence 4457999999999999999999999888 6778889988543
No 79
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.73 E-value=7.1e-09 Score=63.79 Aligned_cols=41 Identities=32% Similarity=0.428 Sum_probs=28.9
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcC--ccCCcccCceeeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRG--QFHEYQESTIGGIK 66 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~--~f~~~~~~Ti~~~f 66 (69)
.....+||++||+++||||||+.+|+.. .|...+. +++.+|
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~-~~g~d~ 75 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDT 75 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC-ccceee
Confidence 4556799999999999999999999953 4455443 455554
No 80
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.72 E-value=1.4e-08 Score=59.98 Aligned_cols=41 Identities=32% Similarity=0.609 Sum_probs=36.5
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...+||+++|+.++|||+|+.+++.+.|...+.+|++..+.
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 59 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR 59 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE
Confidence 35699999999999999999999999999888888887664
No 81
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.71 E-value=1.6e-08 Score=59.17 Aligned_cols=40 Identities=33% Similarity=0.604 Sum_probs=35.8
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
..+||+++|+.++|||+|+.+++.+.|...+.+|++..+.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 42 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR 42 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEE
Confidence 4799999999999999999999999999999888876553
No 82
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.71 E-value=5.9e-09 Score=62.64 Aligned_cols=41 Identities=34% Similarity=0.265 Sum_probs=29.8
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeee
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGI 65 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~ 65 (69)
.....+||+++|+++||||||+.+|+...+...+.++++.+
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~ 59 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPED 59 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTT
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccc
Confidence 34567999999999999999999998655544445555544
No 83
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.69 E-value=1.5e-08 Score=57.75 Aligned_cols=39 Identities=33% Similarity=0.617 Sum_probs=35.0
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
.+||+++|+.++|||+|+.++..+.|...+.+|++..+.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~ 41 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR 41 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEE
Confidence 489999999999999999999999998888888877653
No 84
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.69 E-value=9.7e-09 Score=61.97 Aligned_cols=42 Identities=29% Similarity=0.677 Sum_probs=36.1
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+||+++|+.++|||+|+.+++.+.|...+.+|++.++.
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 49 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNH 49 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeE
Confidence 446799999999999999999999999999888888887653
No 85
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.64 E-value=1e-08 Score=61.30 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=26.3
Q ss_pred ccccceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeee
Q psy1356 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIK 66 (69)
Q Consensus 23 ~~~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f 66 (69)
+......+||+++|+.+||||+|+.++.+ .|... +|++.++
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~--~~~~~~~ 54 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFH-KMSPN--ETLFLES 54 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHS-CCCGG--GGGGCCC
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHh-cCCCc--ceeeecc
Confidence 44566789999999999999999986655 44433 4555444
No 86
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.64 E-value=3.1e-08 Score=58.23 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=33.6
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIK 66 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f 66 (69)
...+||+++|+.++|||+|+.+++.+. ...+.||++..+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~ 54 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI 54 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce
Confidence 457999999999999999999999888 677889988654
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.63 E-value=1.5e-08 Score=58.28 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=30.6
Q ss_pred eeEEEECCCCCChhhhhhhhhcCccCCcccCceeee
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGI 65 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~ 65 (69)
+||+++|+.+||||+|+.+|+.+.|.. +.||++..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~ 35 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN 35 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee
Confidence 589999999999999999999888875 67888743
No 88
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.06 E-value=3.7e-09 Score=63.37 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=37.2
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+||+++|+.++|||+|+.+|+.+.|...+.+|++..+.
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 68 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS 68 (204)
Confidence 346799999999999999999999999999889899887654
No 89
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.62 E-value=2e-08 Score=60.20 Aligned_cols=38 Identities=34% Similarity=0.537 Sum_probs=27.0
Q ss_pred eeeeEEEECCCCCChhhhhhhhhc--CccCCcccCceeeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVR--GQFHEYQESTIGGIK 66 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~--~~f~~~~~~Ti~~~f 66 (69)
..+||+++|+++||||||+.+|++ ..|...+. +++.++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~~~~ 44 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDT 44 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-GGCTTE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccceeE
Confidence 469999999999999999999995 44555443 455544
No 90
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.61 E-value=3.6e-08 Score=56.89 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=32.9
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIK 66 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f 66 (69)
..+||+++|+.++|||+|+.+++.+.|.. +.||++..+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~ 43 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV 43 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccce
Confidence 46899999999999999999999988864 778887654
No 91
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.61 E-value=2.3e-08 Score=58.15 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=33.6
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIK 66 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f 66 (69)
..+||+++|+.++|||+|+.+|+.+.|...+.+++..++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~ 45 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI 45 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEee
Confidence 468999999999999999999999999887777765544
No 92
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.61 E-value=3.5e-08 Score=59.37 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=30.2
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCce
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti 62 (69)
...+||+++|+.++|||+|+.+|+.+.|...|.++.
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~ 40 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT 40 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc
Confidence 357899999999999999999999999998886554
No 93
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.60 E-value=1.6e-08 Score=59.75 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=33.2
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGI 65 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~ 65 (69)
...+||+++|+.++|||+|+.+++.+.|. .+.||++..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~ 51 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN 51 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc
Confidence 35799999999999999999999998888 678888744
No 94
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.58 E-value=3.7e-08 Score=57.01 Aligned_cols=38 Identities=34% Similarity=0.537 Sum_probs=27.4
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIK 66 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f 66 (69)
..+||+++|+.+||||+|+.+|+...|...+ ++++.++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~ 40 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDV 40 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-Cccccce
Confidence 4689999999999999999999998887654 3455443
No 95
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.58 E-value=3e-08 Score=65.40 Aligned_cols=37 Identities=27% Similarity=0.254 Sum_probs=31.0
Q ss_pred eEEEECCCCCChhhhhhhhhcCccCC---cccCceeeeee
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRGQFHE---YQESTIGGIKN 67 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~~f~~---~~~~Ti~~~f~ 67 (69)
||+++|+++||||||+.++..+.++. .+.||+|++|.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~ 40 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE 40 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE
Confidence 79999999999999999887765543 36799999875
No 96
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.55 E-value=2e-08 Score=58.74 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=32.9
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGI 65 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~ 65 (69)
...+||+++|+.++|||+|+.+++.+.| ..+.||++..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~ 53 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN 53 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc
Confidence 4579999999999999999999999888 5677888754
No 97
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.54 E-value=5.1e-08 Score=56.79 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=27.1
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCccCCcccCceeee
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGI 65 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~ 65 (69)
.+|++++|++++|||||+.+++...+...+.|++..+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~ 39 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVE 39 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCccee
Confidence 4899999999999999999999887765555554443
No 98
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.54 E-value=5.3e-08 Score=56.16 Aligned_cols=37 Identities=35% Similarity=0.326 Sum_probs=23.1
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCccCCcccCceeee
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGI 65 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~ 65 (69)
.+||+++|+.++|||+|+.+|+...+...+.++.+.+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~ 38 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSED 38 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------C
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCC
Confidence 5899999999999999999999877766555554443
No 99
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.53 E-value=3.7e-08 Score=57.76 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=30.5
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCccCCcccCcee
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~ 63 (69)
.+||+++|+.++|||||+.+++...|...+.|++.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t 35 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT 35 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc
Confidence 37999999999999999999999999887777654
No 100
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.53 E-value=6.1e-08 Score=56.95 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=30.7
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGI 65 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~ 65 (69)
..+||+++|+++||||+|+.+++...+...+.|++..+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~ 43 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVE 43 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeecc
Confidence 46899999999999999999999876665555655544
No 101
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.52 E-value=3.3e-08 Score=58.48 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=31.8
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGI 65 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~ 65 (69)
...+||+++|+++||||+|+.+++.+.+. .+.||+|..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~ 51 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN 51 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE
Confidence 35699999999999999999999988654 577888754
No 102
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.51 E-value=3.4e-08 Score=58.98 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=32.5
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGI 65 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~ 65 (69)
...+||+++|+.+||||+|+.+++.+.|.. +.||++..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~ 64 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN 64 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCcee
Confidence 356999999999999999999999988874 67788754
No 103
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.51 E-value=5.8e-08 Score=66.39 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=28.1
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+||+++|+.+||||||+.+++...|...+.||+++++.
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~ 79 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVV 79 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEE
Confidence 446799999999999999999999999999999999998875
No 104
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.50 E-value=6.7e-08 Score=57.61 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=31.5
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIK 66 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f 66 (69)
..+||+++|+++||||+|+.+++.+.|. .+.||++...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~ 59 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS 59 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCe
Confidence 4679999999999999999999998886 4778887653
No 105
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.50 E-value=7.6e-08 Score=61.01 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=36.5
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
..+||+++|+.++|||+|+.+|+.+.|...+.+|++..+.
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~ 193 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS 193 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeE
Confidence 4589999999999999999999999999999999987764
No 106
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.49 E-value=3.8e-08 Score=59.72 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=35.3
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
..+||+++|++|||||+|+.+|+...|...+.++|+.+|.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 4689999999999999999999988887777788888874
No 107
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.49 E-value=4.6e-08 Score=58.72 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=27.7
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGI 65 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~ 65 (69)
..+||+++|+++||||+|+.+++.+.|. .+.||++..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~ 60 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT 60 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce
Confidence 4689999999999999999999998875 477887764
No 108
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.48 E-value=7e-08 Score=58.16 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=33.5
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCC---cccCceeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHE---YQESTIGGIK 66 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~---~~~~Ti~~~f 66 (69)
....+||+++|+.++|||+|+.+++...|.. .+.++++.+|
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~ 52 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY 52 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe
Confidence 3457999999999999999999999988765 4777776544
No 109
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.47 E-value=4.4e-08 Score=57.79 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=32.4
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGI 65 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~ 65 (69)
...+||+++|+.++|||+|+.+++.+.|.. +.||++..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~ 57 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN 57 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE
Confidence 357999999999999999999999888875 67887743
No 110
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.44 E-value=1.9e-07 Score=60.00 Aligned_cols=40 Identities=30% Similarity=0.322 Sum_probs=33.4
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcC--ccC-CcccCceeeeee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRG--QFH-EYQESTIGGIKN 67 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~--~f~-~~~~~Ti~~~f~ 67 (69)
..+||+++|+++||||+|+.+++.+ .+. ..+.+|++.+|.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~ 44 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS 44 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE
Confidence 3689999999999999999999877 444 357899998875
No 111
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.43 E-value=8.7e-08 Score=55.07 Aligned_cols=37 Identities=32% Similarity=0.370 Sum_probs=24.0
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeee
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIK 66 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f 66 (69)
.+||+++|++++|||+|+.+++...+. .+.++++..+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~ 38 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY 38 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce
Confidence 589999999999999999999876654 3445665554
No 112
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.1e-07 Score=56.10 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=27.2
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCC---cccCceeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHE---YQESTIGGIK 66 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~---~~~~Ti~~~f 66 (69)
...+||+++|+.++|||+|+.+++...|.. .+.++++.+|
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~ 88 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY 88 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee
Confidence 457899999999999999999999887765 4556665543
No 113
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.41 E-value=1.4e-07 Score=61.35 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=34.1
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
...+||+++|+.+||||+|+.+|+.+.|...+ ||++.++.
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~ 202 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE 202 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEE
Confidence 35689999999999999999999999887655 78887654
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.40 E-value=1.1e-07 Score=56.19 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=24.2
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~ 64 (69)
...+||+++|+.++|||+|+.+++...|...+.++.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~ 58 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGK 58 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCc
Confidence 35799999999999999999999998877766666653
No 115
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.32 E-value=4.8e-07 Score=61.05 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=34.6
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f~ 67 (69)
....+||+++|+.+||||+|+.+|+...|.. +.||++.++.
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~ 359 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE 359 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE
Confidence 3457999999999999999999999988775 5689987764
No 116
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.29 E-value=4.9e-07 Score=52.98 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=28.5
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCCcccCcee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~ 63 (69)
...+||+++|+.++|||+|+.+++...+. .+.++.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~ 56 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPG 56 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCC
Confidence 45689999999999999999999988743 3444444
No 117
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.27 E-value=4.8e-07 Score=55.22 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=26.3
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccC
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
...+||+++|+.+||||+|+.+|+.+.|.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~ 55 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD 55 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 45799999999999999999999998875
No 118
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.27 E-value=4.5e-07 Score=57.18 Aligned_cols=42 Identities=24% Similarity=0.417 Sum_probs=27.1
Q ss_pred cceeeeEEEECCCCCChhhhhhh-hhcCccCCcc-------cCceeeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLR-FVRGQFHEYQ-------ESTIGGIKN 67 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~-~~~~~f~~~~-------~~Ti~~~f~ 67 (69)
....++|+++|.+|+|||||+.+ +..+.|...+ .+|+++++.
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~ 54 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQS 54 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEE
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEE
Confidence 34679999999999999999988 5567777766 678877654
No 119
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.19 E-value=1.1e-06 Score=54.11 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=27.2
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccCCcccC
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~ 60 (69)
....+||+++|.+|+|||+|+.++++..+.....+
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~ 60 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTA 60 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCC
Confidence 34579999999999999999999998887655544
No 120
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.15 E-value=8.5e-07 Score=52.97 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=23.0
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCceee
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~ 64 (69)
...+++++|++|+|||+|+.+++...|...+.|+.|.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~ 61 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGR 61 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcc
Confidence 4578999999999999999999988765555566554
No 121
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.13 E-value=1e-06 Score=55.39 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=31.2
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeee
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIK 66 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f 66 (69)
.+||+++|++++|||+|+.++++..+...+.|++.+++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~ 40 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEK 40 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEe
Confidence 58999999999999999999998877655556665544
No 122
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.12 E-value=1.6e-06 Score=49.35 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=23.1
Q ss_pred eeEEEECCCCCChhhhhhhhhcCccC
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
+||+++|+.++|||+|+.+++...+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~ 27 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSA 27 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCee
Confidence 68999999999999999999987653
No 123
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.11 E-value=1.8e-06 Score=54.33 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=28.1
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcccCce
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti 62 (69)
..+||+++|+++||||||+.++++..+.....|.+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~ 38 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGV 38 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCc
Confidence 46899999999999999999999877654333433
No 124
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.02 E-value=3.4e-06 Score=49.48 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=23.6
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
.+||+++|++++|||+|+.+++...+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 47999999999999999999998764
No 125
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.99 E-value=5.3e-06 Score=52.78 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.5
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
.+||+++|+++||||||+.++++..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~ 28 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ 28 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC
Confidence 58999999999999999999998653
No 126
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.98 E-value=4.6e-06 Score=51.76 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=28.3
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCc-cCCcccCc
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQ-FHEYQEST 61 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~-f~~~~~~T 61 (69)
...++|+++|..++|||+|+.+++... |...+.++
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~ 55 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ 55 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC
Confidence 356899999999999999999999766 66555543
No 127
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.97 E-value=3.2e-06 Score=53.51 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=29.3
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCccCCcccCceeee
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGI 65 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~ 65 (69)
.++|+++|..++|||||+.++++..+...+.|++..+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~ 39 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVE 39 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEE
Confidence 5899999999999999999999877654444544433
No 128
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.97 E-value=5.1e-06 Score=54.67 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=27.7
Q ss_pred cceeeeEEEECCCCCChhhhhhh-hhcCccCCccc--------Cceeeee
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLR-FVRGQFHEYQE--------STIGGIK 66 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~-~~~~~f~~~~~--------~Ti~~~f 66 (69)
....++|+++|++|+|||+|+.+ |....|...+. +|+++++
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~ 83 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEA 83 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEE
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEE
Confidence 44679999999999999999999 44566655543 6777655
No 129
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.89 E-value=8.1e-06 Score=50.91 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=25.1
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccCC
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHE 56 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~~ 56 (69)
...++|+++|.+++|||+|+.+++...+..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~ 48 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFF 48 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC-
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCcc
Confidence 457999999999999999999999766543
No 130
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.87 E-value=5.8e-06 Score=52.06 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=28.3
Q ss_pred eeEEEECCCCCChhhhhhhhhcCccCCcccCceeee
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGI 65 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~ 65 (69)
.||+++|++++|||||+.++++..+.....|++.++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~ 37 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVE 37 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEE
Confidence 489999999999999999999876654444555443
No 131
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.86 E-value=4e-06 Score=50.40 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=25.0
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
...+||+++|+.++|||+|+.+++...+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~ 54 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKR 54 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 3568999999999999999999998863
No 132
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.78 E-value=7.8e-06 Score=52.55 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=21.2
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcC-ccCCcc
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRG-QFHEYQ 58 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~-~f~~~~ 58 (69)
....|+|+++|++|+|||+|+.++... .|+..+
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC--------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 446799999999999999999996653 665544
No 133
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.75 E-value=2e-05 Score=49.26 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.6
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
..++|+++|+.++|||||+.+++...+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~ 61 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQV 61 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999999998774
No 134
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.75 E-value=3e-05 Score=52.27 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=25.8
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCccC
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
....|+|+++|++|+|||||+..+++..+.
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCC
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 456789999999999999999999987763
No 135
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.71 E-value=2e-05 Score=49.42 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=25.9
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccC
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
...+||+++|+.++|||||+.++++..|.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 34689999999999999999999998874
No 136
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.64 E-value=2.7e-05 Score=48.80 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=24.7
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
..++|+++|+.++|||||+.+++...+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~ 64 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERV 64 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999999998775
No 137
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.60 E-value=3e-05 Score=51.87 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=24.6
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
..+||+++|+++||||||+.+++...+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~ 200 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEER 200 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 458999999999999999999998776
No 138
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.57 E-value=5.8e-05 Score=50.06 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=27.2
Q ss_pred ceeeeEEEECCCCCChhhhhhhhh---cCccCCcccC--ceeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFV---RGQFHEYQES--TIGGIK 66 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~---~~~f~~~~~~--Ti~~~f 66 (69)
...++|+++|..++|||+|+.+++ .+.+..++.+ |+.+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~ 50 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGY 50 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecc
Confidence 356899999999999999999998 3455555555 776654
No 139
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.52 E-value=2.9e-05 Score=46.67 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.1
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
...+++++|..|+|||+|+.+++...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999886543
No 140
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.48 E-value=0.00011 Score=48.67 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=30.2
Q ss_pred ceeeeEEEECCCCCChhhhhhhhh---cCccCCcccC--ceeeee
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFV---RGQFHEYQES--TIGGIK 66 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~---~~~f~~~~~~--Ti~~~f 66 (69)
...++|+++|..++|||+|+.+++ .+.+.+++.+ ||.+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~ 52 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGF 52 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEee
Confidence 457899999999999999999998 3455555555 776654
No 141
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.48 E-value=7.4e-05 Score=48.03 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=25.0
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccC
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
...+|+++|.+++|||||+.+++...+.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ 33 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVA 33 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCcee
Confidence 4568999999999999999999988774
No 142
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.42 E-value=6.8e-05 Score=50.16 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=20.7
Q ss_pred eeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
.+|+++|.++||||||+.+++...+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~ 26 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK 26 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4799999999999999999998764
No 143
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.39 E-value=9e-05 Score=49.57 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=24.1
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
..+|++++|++|||||||+.++++..+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcc
Confidence 358999999999999999999988754
No 144
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.37 E-value=6.2e-05 Score=50.58 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=24.5
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCccC
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
..+|+++|.++||||+|+.+++...+.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~ 49 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERIS 49 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 579999999999999999999987764
No 145
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.37 E-value=0.00013 Score=47.55 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.7
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccC
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
...+|+++|++++|||||+.++++..|.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~l 60 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFL 60 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCS
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcC
Confidence 3459999999999999999999998773
No 146
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.37 E-value=0.00013 Score=46.82 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.5
Q ss_pred ccceeeeEEEECCCCCChhhhhhhhhcCccC
Q psy1356 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 25 ~~~~~~kv~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
.+...-+|.++|.+++|||||+.++++..+.
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~ 36 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS 36 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence 4456789999999999999999999988765
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.31 E-value=3.4e-05 Score=53.52 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=31.4
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCccCCcccCceeeee
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGIK 66 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~~~Ti~~~f 66 (69)
..+|+++|+.++|||||+.+|....+...+.+++..++
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i 41 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI 41 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE
Confidence 57899999999999999999998877766666665544
No 148
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.29 E-value=0.00012 Score=47.73 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=25.6
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccC
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
....+|+++|+.++|||||+.++++..|.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 34679999999999999999999988874
No 149
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.28 E-value=0.00013 Score=48.52 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.8
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
.++|.++|.++||||||+.+++...+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~ 27 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGI 27 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 37899999999999999999998664
No 150
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.27 E-value=9.8e-05 Score=49.35 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=23.9
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCccC
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
..+|+++|.++||||+|+.++++..+.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~ 29 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS 29 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce
Confidence 368999999999999999999987664
No 151
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.22 E-value=0.00016 Score=48.79 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=23.4
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
....++|+++|+.++|||||+.+++...+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~ 59 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNV 59 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCC
Confidence 44679999999999999999999998876
No 152
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.21 E-value=0.00015 Score=49.54 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.0
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
.+||+++|.+++|||||+.+++...
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4889999999999999999999875
No 153
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.18 E-value=0.00017 Score=48.44 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=23.8
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCc
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
...+|++++|++++|||||+.+++...
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~ 219 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEE 219 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCC
Confidence 346899999999999999999999654
No 154
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.17 E-value=0.00011 Score=50.07 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.8
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
..+||+++|.+++|||||+.+++...+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 358899999999999999999987654
No 155
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.15 E-value=0.0002 Score=45.31 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=25.0
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
....+|+++|..++|||||+.++++..+
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 3467899999999999999999998876
No 156
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.15 E-value=0.00018 Score=48.31 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=22.3
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccC
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
..+++.++|.++||||+|+.+++...+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~ 48 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQAS 48 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcc
Confidence 4589999999999999999999987653
No 157
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.11 E-value=0.00032 Score=44.91 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=24.1
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccC
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
...+|.++|.+++|||||+.+++...+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~ 34 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS 34 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc
Confidence 3458999999999999999999987653
No 158
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.08 E-value=0.00038 Score=46.45 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=20.8
Q ss_pred eeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
+||.++|.++||||+|+.+++....
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~ 25 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV 25 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Confidence 5899999999999999999997663
No 159
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.07 E-value=0.0003 Score=45.81 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=24.5
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccC
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
..++++++|.+|+|||+|+.+++...+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~ 193 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE 193 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 4679999999999999999999987643
No 160
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.05 E-value=0.00047 Score=45.65 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.8
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcC
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
....++|+++|+.++|||||+.+++..
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 345799999999999999999999874
No 161
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.04 E-value=0.00028 Score=44.81 Aligned_cols=25 Identities=32% Similarity=0.709 Sum_probs=21.5
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
.|.+.++|++|+|||+|+..+++..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998776543
No 162
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.01 E-value=0.00033 Score=44.25 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=22.6
Q ss_pred eeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
++++++|.++||||||+.++....+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6999999999999999999987654
No 163
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.99 E-value=0.00062 Score=44.66 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.1
Q ss_pred eeEEEECCCCCChhhhhhhhhcCc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
.+|+++|.+++|||||+.+++...
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEEC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCC
Confidence 367899999999999999998765
No 164
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.96 E-value=0.00099 Score=44.75 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=22.0
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhc
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
...++|+++|..++|||+|+.+++.
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~ 39 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMY 39 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHH
Confidence 4578999999999999999999843
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.95 E-value=0.00034 Score=46.17 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=21.2
Q ss_pred ee-EEEECCCCCChhhhhhhhhcCccC
Q psy1356 30 YK-LVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 30 ~k-v~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
++ |+++|.+++|||||+.+++...+.
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~ 205 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQK 205 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC---
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCcc
Confidence 55 889999999999999999987763
No 166
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.89 E-value=0.0005 Score=41.07 Aligned_cols=22 Identities=41% Similarity=0.765 Sum_probs=18.3
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.++.++|++|+|||+|+...+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999876543
No 167
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.87 E-value=0.00049 Score=40.65 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.++++|.+|+|||+|+..+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999988765
No 168
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.85 E-value=0.00017 Score=49.25 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=22.9
Q ss_pred eeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
+||+++|.+++|||||+.+++...+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~ 268 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDR 268 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTB
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCC
Confidence 8999999999999999999997653
No 169
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.79 E-value=0.00061 Score=40.97 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=18.4
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.++++|.+|+|||+|+..+..
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999987664
No 170
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.78 E-value=0.0012 Score=45.70 Aligned_cols=29 Identities=14% Similarity=0.254 Sum_probs=25.8
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCccC
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
...++|+++|..++|||||+.++++..+.
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 45689999999999999999999988763
No 171
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.75 E-value=0.00073 Score=40.98 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=18.0
Q ss_pred EEEECCCCCChhhhhhhhhc
Q psy1356 32 LVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~ 51 (69)
|+++|++|+||++|+.+++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999988764
No 172
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.65 E-value=0.0015 Score=46.28 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=24.3
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
..++|+++|+.++|||||+..+++..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~ 94 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENL 94 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999997664
No 173
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.63 E-value=0.001 Score=42.43 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=22.8
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
..++++++|.++||||||+.++....
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 35789999999999999999988654
No 174
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.60 E-value=0.00098 Score=39.46 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=17.6
Q ss_pred EEEECCCCCChhhhhhhhhc
Q psy1356 32 LVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~ 51 (69)
++++|.+|+|||+|+..++.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999988764
No 175
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.58 E-value=0.001 Score=40.97 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.4
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-++++|++|+|||+|+..+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 577899999999999988765
No 176
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.57 E-value=0.0011 Score=44.33 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.7
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
...++.++|.+++|||+|+..++...+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~ 45 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVL 45 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 357899999999999999999998654
No 177
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.56 E-value=0.0011 Score=40.60 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=18.3
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-++++|.+|+|||+|+..+..
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478899999999999988774
No 178
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.55 E-value=0.0016 Score=44.31 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=23.6
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
..++|+++|..++|||+|+.+++...
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~ 43 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIA 43 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCC
Confidence 46899999999999999999998765
No 179
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.53 E-value=0.0012 Score=39.06 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.2
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+.++|.+|+|||+|+..+..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999987765
No 180
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0013 Score=46.03 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=23.2
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcC
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
...+||+++|..++|||||+.+++..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHh
Confidence 34689999999999999999999865
No 181
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.51 E-value=0.001 Score=45.06 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=23.0
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcC
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
...+||+++|..++|||+|+.+++..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45799999999999999999998754
No 182
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.50 E-value=0.0012 Score=39.61 Aligned_cols=21 Identities=48% Similarity=0.543 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+.++|++|+|||+|+....+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 467899999999999987654
No 183
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.50 E-value=0.0012 Score=38.68 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=16.3
Q ss_pred eEEEECCCCCChhhhhhhh
Q psy1356 31 KLVLLGESAVGKSSLVLRF 49 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~ 49 (69)
-+.++|.+|+|||+|+..+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678999999999999953
No 184
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.49 E-value=0.0012 Score=46.19 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=24.0
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccC
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
..++|+++|..++|||||+.++....+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~ 31 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA 31 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc
Confidence 3578999999999999999999876554
No 185
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.47 E-value=0.0031 Score=44.02 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.6
Q ss_pred ceeeeEEEECCCCCChhhhhhhhh
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~ 50 (69)
...++|+++|..++|||+|+.+++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll 198 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIM 198 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHH
T ss_pred CCccEEEEEcCCCCCHHHHHHHHH
Confidence 456899999999999999999985
No 186
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.47 E-value=0.0012 Score=43.79 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.5
Q ss_pred eeEEEECCCCCChhhhhhhhhcCc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
+++.++|.+++|||+|+.+++...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999988654
No 187
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.46 E-value=0.0013 Score=40.05 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=18.3
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.+.++|.+|+|||+|+..++.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999987665
No 188
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.46 E-value=0.0014 Score=39.55 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=18.8
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
-++++|.+|+|||+|+..+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4788999999999999887754
No 189
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.45 E-value=0.0015 Score=37.43 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
--+++.|++|+|||+|+..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999987654
No 190
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.41 E-value=0.0021 Score=42.95 Aligned_cols=26 Identities=23% Similarity=0.338 Sum_probs=23.0
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcC
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
...+||+++|..++|||+|+.+++.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~ 47 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHD 47 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhh
Confidence 45689999999999999999998754
No 191
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.40 E-value=0.0015 Score=38.34 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.2
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.++++|.+|+|||+|+..+...
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999887764
No 192
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.32 E-value=0.0021 Score=43.59 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=21.7
Q ss_pred eeeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
.+++.++|.+|+|||+|+..+++..+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccc
Confidence 35699999999999999998776543
No 193
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.29 E-value=0.0012 Score=45.39 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=25.6
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCccCCcc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 58 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~f~~~~ 58 (69)
...+|+++|..++|||+|+.++....+....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e 33 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE 33 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcccc
Confidence 3578999999999999999999876665443
No 194
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.28 E-value=0.0022 Score=42.89 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.5
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcC
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
..++|+++|..++|||+|+.+++..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999864
No 195
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.22 E-value=0.0028 Score=41.91 Aligned_cols=25 Identities=16% Similarity=0.196 Sum_probs=22.5
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhc
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
...++|+++|..++|||+|+.+++.
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~ 33 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTY 33 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHh
Confidence 3568999999999999999999886
No 196
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.22 E-value=0.0025 Score=38.57 Aligned_cols=20 Identities=25% Similarity=0.659 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhhhhhhhh
Q psy1356 31 KLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~ 50 (69)
-+.++|++|+|||+|+..++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46789999999999998876
No 197
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.22 E-value=0.0023 Score=38.29 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=18.8
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.-++++|.+|+|||+|+.++..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999988764
No 198
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.22 E-value=0.0028 Score=41.87 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.8
Q ss_pred eeeEEEECCCCCChhhhhhhhhcC
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+||+++|..++|||+|+.+++..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 589999999999999999998863
No 199
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.17 E-value=0.0028 Score=38.10 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=18.9
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-..+.++|.+|+|||+|+..+..
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999976543
No 200
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.14 E-value=0.0027 Score=37.36 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.4
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+.-++..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999876653
No 201
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.12 E-value=0.0021 Score=37.54 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-.++++|++|+|||+|+..+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999987654
No 202
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.11 E-value=0.0019 Score=37.08 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-.+++.|++|+|||+|+..+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999987654
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.10 E-value=0.0031 Score=41.17 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=21.0
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
...|.++|.+|+|||+|+.+++.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999875
No 204
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.10 E-value=0.0028 Score=36.24 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=18.3
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.|++.|.+|+|||++...+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999987754
No 205
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.05 E-value=0.0027 Score=37.94 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.4
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+.++|++|+|||+|+..++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999998865
No 206
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.05 E-value=0.003 Score=37.24 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.0
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.++++|.+|+|||+++..+...
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999887654
No 207
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.04 E-value=0.0033 Score=38.97 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=18.3
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+.-..+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3579999999999999877653
No 208
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.04 E-value=0.0035 Score=42.32 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.4
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcC
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
..++|+++|..++|||+|+.+++..
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999753
No 209
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.02 E-value=0.0035 Score=37.47 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.0
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
++|++.|.+|+|||++...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999887753
No 210
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.00 E-value=0.0034 Score=36.89 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-++++|.+|+|||+|+..+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 468899999999999987764
No 211
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.00 E-value=0.0035 Score=36.14 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=18.7
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|+++|.+|+|||++...+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999887654
No 212
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.97 E-value=0.0041 Score=37.25 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.0
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
++|++.|.+|+|||++...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988753
No 213
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.97 E-value=0.0039 Score=37.13 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=18.7
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-.|+++|.+|+|||++...+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999887653
No 214
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.96 E-value=0.0036 Score=37.74 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
++.++|.+|+|||+|+...+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999986554
No 215
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.96 E-value=0.0036 Score=37.29 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=18.3
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..++++|.+|+|||+|+..+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999887653
No 216
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=95.94 E-value=0.0057 Score=43.35 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=23.0
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhc
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.....+|+++|..++|||+|+.+++.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~ 34 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILY 34 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999873
No 217
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.94 E-value=0.004 Score=37.06 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-++++|++|+|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 367889999999999988774
No 218
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.93 E-value=0.0044 Score=38.05 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.8
Q ss_pred eeEEEECCCCCChhhhhhhhh
Q psy1356 30 YKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~ 50 (69)
..++++|.+|+|||+|+..+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998877
No 219
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.93 E-value=0.003 Score=38.36 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=14.0
Q ss_pred eEEEECCCCCChhhhhhhhh
Q psy1356 31 KLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~ 50 (69)
-+.++|.+|+|||+|+..+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999998887
No 220
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.91 E-value=0.0038 Score=37.21 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=19.0
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.-.+++.|++|+|||+|+..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999987654
No 221
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.90 E-value=0.0039 Score=36.71 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+++.|++|+|||+|+..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999987654
No 222
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.89 E-value=0.0042 Score=35.94 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-|++.|.+|+|||++...+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999887654
No 223
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.88 E-value=0.0049 Score=34.97 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.7
Q ss_pred eeEEEECCCCCChhhhhhhh
Q psy1356 30 YKLVLLGESAVGKSSLVLRF 49 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~ 49 (69)
.-|++.|.+|+|||++...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35789999999999999877
No 224
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.87 E-value=0.004 Score=36.96 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=18.8
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|+++|.+|+|||++...+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999987653
No 225
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.87 E-value=0.0044 Score=39.00 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.0
Q ss_pred EEEECCCCCChhhhhhhhhcC
Q psy1356 32 LVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~ 52 (69)
+.++|++|+|||+|+...++-
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 569999999999999877654
No 226
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.86 E-value=0.0048 Score=38.55 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+...++-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999887654
No 227
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.84 E-value=0.0043 Score=36.23 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=17.8
Q ss_pred EEEECCCCCChhhhhhhhhc
Q psy1356 32 LVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~ 51 (69)
+++.|+.|+|||+|+..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999987654
No 228
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.84 E-value=0.0048 Score=36.17 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.|++.|..|+|||++...+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999876654
No 229
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=95.83 E-value=0.003 Score=41.69 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=19.4
Q ss_pred eEEEECCCCCChhhhhhhhh
Q psy1356 31 KLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~ 50 (69)
+|+++|..++|||+|+.+++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999998
No 230
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.83 E-value=0.0051 Score=38.17 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=18.6
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+.-..+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999877654
No 231
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.83 E-value=0.0052 Score=40.56 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.5
Q ss_pred cceeeeEEEECCCCCChhhhhhhh
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRF 49 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~ 49 (69)
.....||+++|.+++|||+++.++
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHH
Confidence 345799999999999999999874
No 232
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.83 E-value=0.0052 Score=38.16 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=18.6
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+.-..+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999876654
No 233
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.81 E-value=0.0041 Score=38.25 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=17.8
Q ss_pred EEEECCCCCChhhhhhhhhcC
Q psy1356 32 LVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~ 52 (69)
+.++|++|+|||+|+.-..+-
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 578999999999999876653
No 234
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=95.81 E-value=0.0059 Score=39.96 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.3
Q ss_pred ceeeeEEEECCCCCChhhhhhhh
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRF 49 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~ 49 (69)
...+|+++||...+|||+++.|+
T Consensus 5 ~~~~klLlLG~geSGKSTi~KQm 27 (327)
T 3ohm_A 5 RRELKLLLLGTGESGKSTFIKQM 27 (327)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHH
T ss_pred cccceEEEEcCCCccHHHHHHHH
Confidence 45799999999999999999863
No 235
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.81 E-value=0.0059 Score=40.23 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.5
Q ss_pred ceeeeEEEECCCCCChhhhhhhh
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRF 49 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~ 49 (69)
....||++||.+++|||+++.++
T Consensus 7 ~~~~k~lllG~~~sGKsT~~kq~ 29 (354)
T 2xtz_A 7 IHIRKLLLLGAGESGKSTIFKQI 29 (354)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHH
T ss_pred CCceeEEEECCCCCcHHHHHHHH
Confidence 45789999999999999999874
No 236
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.79 E-value=0.0055 Score=39.89 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.8
Q ss_pred eeeeEEEECCCCCChhhhhhhhhc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..++|+++|.+|+|||+|+.++..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998763
No 237
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.79 E-value=0.0038 Score=42.04 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=21.8
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcC
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
...++|+++|.+|+|||++..++...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988754
No 238
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.78 E-value=0.0047 Score=36.79 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=18.1
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.-++++|.+|+|||+|...+..
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999876543
No 239
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=95.78 E-value=0.0033 Score=43.37 Aligned_cols=24 Identities=13% Similarity=0.380 Sum_probs=21.6
Q ss_pred ceeeeEEEECCCCCChhhhhhhhh
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~ 50 (69)
....+|+++|..++|||||+.+++
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHH
T ss_pred hcCCEEEEECCCCCcHHHHHHHHH
Confidence 456899999999999999999986
No 240
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.78 E-value=0.0036 Score=40.75 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=19.7
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.-++.++|.+|+|||+|+..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999987654
No 241
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.77 E-value=0.0052 Score=38.30 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+.-..+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999877654
No 242
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.77 E-value=0.005 Score=40.82 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=20.5
Q ss_pred eEEEECCCCCChhhhhhhhhcCcc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
.+.++|.+|+|||+|+..++...-
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 578999999999999998886543
No 243
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.75 E-value=0.0048 Score=38.77 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=18.9
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
-+++.|..|+|||+|+.++...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 4788999999999999988753
No 244
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.74 E-value=0.0049 Score=40.58 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.3
Q ss_pred ceeeeEEEECCCCCChhhhhhh
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLR 48 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~ 48 (69)
...+|+++||...+|||+++.|
T Consensus 3 ~~~~klLLLG~geSGKSTi~KQ 24 (340)
T 4fid_A 3 AKPITVMLLGSGESGKSTIAKQ 24 (340)
T ss_dssp -CCEEEEEEECTTSSHHHHHHH
T ss_pred CCcceEEEECCCCCcHHHHHHH
Confidence 3578999999999999999976
No 245
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.73 E-value=0.0053 Score=38.45 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=18.4
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+.-..+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3569999999999999877654
No 246
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.73 E-value=0.0057 Score=37.38 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=18.4
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+...+.-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999876643
No 247
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.73 E-value=0.0051 Score=37.73 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=17.7
Q ss_pred EEEECCCCCChhhhhhhhhc
Q psy1356 32 LVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~ 51 (69)
++++|++|+|||+|+..+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999987654
No 248
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.72 E-value=0.0049 Score=35.65 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-++++|++|+|||+|+..+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999986654
No 249
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.71 E-value=0.0056 Score=39.00 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=18.0
Q ss_pred EEEECCCCCChhhhhhhhhcC
Q psy1356 32 LVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~ 52 (69)
+.++|++|+|||+|+...++-
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999877654
No 250
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.71 E-value=0.0055 Score=35.24 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.0
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|++.|.+|+|||++...+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3578999999999999988775
No 251
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.71 E-value=0.0053 Score=35.54 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=17.8
Q ss_pred eeEEEECCCCCChhhhhhhhh
Q psy1356 30 YKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~ 50 (69)
..++++|.+|+|||++...+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 358899999999999987654
No 252
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.70 E-value=0.0067 Score=38.71 Aligned_cols=23 Identities=39% Similarity=0.387 Sum_probs=19.4
Q ss_pred eEEEECCCCCChhhhhhhhhcCc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
.+.++|.+|+|||+|+..+....
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 56789999999999999877543
No 253
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.69 E-value=0.0059 Score=37.54 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+.-.++-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3579999999999999887654
No 254
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.69 E-value=0.0057 Score=37.94 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+.-..+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3579999999999999877654
No 255
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.68 E-value=0.0062 Score=38.56 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+.-.++-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3579999999999999877654
No 256
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.68 E-value=0.0058 Score=38.63 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=17.9
Q ss_pred EEEECCCCCChhhhhhhhhcC
Q psy1356 32 LVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~ 52 (69)
+.++|++|+|||+|+.-..+-
T Consensus 53 ~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEcCCCCcHHHHHHHHHcC
Confidence 569999999999999877654
No 257
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.68 E-value=0.0059 Score=36.74 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=18.6
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+.++|++|+|||+|+..++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 467899999999999998876
No 258
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.68 E-value=0.0065 Score=37.45 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+.-.++-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999887654
No 259
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=95.67 E-value=0.0057 Score=42.17 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=22.5
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhc
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
...++|+++|..++|||+|+.+++.
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~ 35 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLL 35 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCChHHHHHHHHHh
Confidence 3568999999999999999999885
No 260
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.66 E-value=0.006 Score=38.50 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=18.6
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+.-.++-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3569999999999999887764
No 261
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.66 E-value=0.0063 Score=38.25 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=18.6
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+....+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4679999999999999877653
No 262
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.66 E-value=0.0065 Score=38.70 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=18.4
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+.-.++-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3579999999999999877654
No 263
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.66 E-value=0.0057 Score=36.53 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=18.6
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.-++++|.+|+|||+|+.+++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4578999999999999987664
No 264
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.66 E-value=0.0057 Score=39.16 Aligned_cols=21 Identities=43% Similarity=0.683 Sum_probs=18.5
Q ss_pred eeEEEECCCCCChhhhhhhhh
Q psy1356 30 YKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~ 50 (69)
-.+.++|.+|+|||+|+..+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999887
No 265
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.66 E-value=0.0059 Score=38.08 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+.-..+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3569999999999999887764
No 266
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.66 E-value=0.006 Score=38.57 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=18.0
Q ss_pred EEEECCCCCChhhhhhhhhcC
Q psy1356 32 LVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~ 52 (69)
+.++|++|+|||+|+.-..+-
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 568999999999999887754
No 267
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.65 E-value=0.0061 Score=36.15 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-++++|++|+|||+|+.+++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999998876
No 268
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.65 E-value=0.0057 Score=36.16 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=18.3
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.-+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999876554
No 269
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.64 E-value=0.0045 Score=38.93 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-++|.|+.|+|||+|+..+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999988764
No 270
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.63 E-value=0.0063 Score=38.15 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=18.4
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+....+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3679999999999999877653
No 271
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.62 E-value=0.0065 Score=36.41 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.9
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|.++|.+|+|||++...+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999887654
No 272
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.61 E-value=0.0061 Score=35.37 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.|++.|.+|+|||++...+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999877654
No 273
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.61 E-value=0.0059 Score=36.35 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..+.++|.+|+|||+|+..+..
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999876554
No 274
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.59 E-value=0.0067 Score=42.77 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.3
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
...+++++|..++|||+|+.+++...
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhc
Confidence 45789999999999999999988433
No 275
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.59 E-value=0.009 Score=35.30 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.6
Q ss_pred eeeEEEECCCCCChhhhhhhhh
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~ 50 (69)
...|++.|..|+|||++...+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999987765
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.59 E-value=0.0068 Score=35.29 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=18.7
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|+++|.+|+|||++...+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999987653
No 277
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.58 E-value=0.0086 Score=40.30 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.1
Q ss_pred eEEEECCCCCChhhhhhhhhcCc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
.+.++|.+|+|||+|+..+++-.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999887643
No 278
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.57 E-value=0.0058 Score=36.17 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.0
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
++|.++|..|+|||++...+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999887664
No 279
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=95.57 E-value=0.0079 Score=39.58 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=20.1
Q ss_pred cceeeeEEEECCCCCChhhhhhhh
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRF 49 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~ 49 (69)
....+|+++||.+.+|||+++.|+
T Consensus 29 ~~~~~klLlLG~geSGKST~~KQm 52 (353)
T 1cip_A 29 AAREVKLLLLGAGESGKSTIVKQM 52 (353)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHH
T ss_pred hcccceEEEEcCCCCCchhHHHHH
Confidence 445799999999999999999864
No 280
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.55 E-value=0.007 Score=38.08 Aligned_cols=22 Identities=18% Similarity=0.230 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+.-.++-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3579999999999999887654
No 281
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.53 E-value=0.011 Score=36.17 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.4
Q ss_pred cceeeeEEEECCCCCChhhhhhhhh
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~ 50 (69)
......+++.|..|||||+++.++.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHH
Confidence 3456788999999999999999887
No 282
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.52 E-value=0.0076 Score=34.95 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=18.5
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|++.|.+|+|||++...+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999877653
No 283
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.51 E-value=0.0071 Score=38.08 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.4
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+....+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4569999999999999887654
No 284
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.50 E-value=0.0093 Score=37.70 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.6
Q ss_pred eEEEECCCCCChhhhhhhhhcCc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
.+.++|++|+|||+|+.-.++-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999877654
No 285
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=95.49 E-value=0.0054 Score=41.47 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.0
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhc
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
...++|+++|..++|||+|+.+++.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 4568999999999999999998863
No 286
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.49 E-value=0.0066 Score=38.23 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.++++|.+|+|||+|+..+..
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 578999999999999986554
No 287
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.46 E-value=0.0077 Score=37.77 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+....+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3679999999999999877654
No 288
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.42 E-value=0.0075 Score=37.60 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=17.7
Q ss_pred EEEECCCCCChhhhhhhhhc
Q psy1356 32 LVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~ 51 (69)
++++|++|+|||+|+..+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 79999999999999987654
No 289
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=95.41 E-value=0.0075 Score=42.75 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=22.3
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhc
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
....+|+++|..++|||+|+.+++.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999884
No 290
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.38 E-value=0.0069 Score=38.05 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
-++++|.+|+|||+|+..++..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999999999999887654
No 291
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.37 E-value=0.0065 Score=38.58 Aligned_cols=22 Identities=18% Similarity=0.378 Sum_probs=18.9
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
--+++.|++|+|||+|+..+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999987764
No 292
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.35 E-value=0.0082 Score=38.94 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.1
Q ss_pred eEEEECCCCCChhhhhhhhh
Q psy1356 31 KLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~ 50 (69)
.+.++|++|+|||+|+..+.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 57899999999999987654
No 293
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.35 E-value=0.0089 Score=39.16 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.5
Q ss_pred eeEEEECCCCCChhhhhhhhhcC
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
-.++++|.+|+|||+|+..++.-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 36889999999999999877654
No 294
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.33 E-value=0.01 Score=36.67 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.6
Q ss_pred eeeeEEEECCCCCChhhhhhhhhc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..++|++.|.+|+|||++..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988764
No 295
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.31 E-value=0.012 Score=34.25 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=18.9
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|+++|..|+|||++...+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999887653
No 296
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.30 E-value=0.0087 Score=36.74 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.+++.|++|+|||+|+..+..
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 489999999999999876653
No 297
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.29 E-value=0.0081 Score=36.16 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=17.7
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-++++|++|+|||+|+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367889999999999887764
No 298
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.29 E-value=0.0084 Score=38.63 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=17.8
Q ss_pred eeEEEECCCCCChhhhhhhhh
Q psy1356 30 YKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~ 50 (69)
-.+.++|.+|+|||+++..+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 357788999999999998765
No 299
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.28 E-value=0.012 Score=34.95 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.3
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
+.+.++|.+|+|||++...+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999988765
No 300
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.27 E-value=0.0097 Score=36.31 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=18.9
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
+.|+++|.+|+||++...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999998887764
No 301
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.27 E-value=0.0093 Score=36.33 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+++.|++|+|||+++..+..
T Consensus 41 ~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999887654
No 302
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.27 E-value=0.0095 Score=39.81 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=18.4
Q ss_pred EEEECCCCCChhhhhhhhhcCc
Q psy1356 32 LVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~~ 53 (69)
+.++|++|+|||+|+.-..+-.
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHcCC
Confidence 5789999999999998776543
No 303
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.27 E-value=0.0065 Score=40.89 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.2
Q ss_pred eEEEECCCCCChhhhhhhhhcCc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
.+.++|.+++|||||+..++...
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 57899999999999999988753
No 304
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.26 E-value=0.0096 Score=39.43 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=18.0
Q ss_pred EEEECCCCCChhhhhhhhhcC
Q psy1356 32 LVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~ 52 (69)
+.++|++|+|||+|+.-..+-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCchHHHHHHHHhcC
Confidence 578999999999999877654
No 305
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.26 E-value=0.011 Score=39.01 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=18.3
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+.-..+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3578999999999999877654
No 306
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.26 E-value=0.0096 Score=34.52 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
+|+++|.+|+|||++...+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999877653
No 307
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.25 E-value=0.0099 Score=37.76 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.1
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.-+++.|.+|+|||++...+..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999988764
No 308
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.25 E-value=0.0095 Score=39.51 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.0
Q ss_pred EEEECCCCCChhhhhhhhhcC
Q psy1356 32 LVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~ 52 (69)
+.++|++|+|||+|+.-..+-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCcHHHHHHHHHHcC
Confidence 579999999999999877654
No 309
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.24 E-value=0.0096 Score=39.46 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=18.4
Q ss_pred EEEECCCCCChhhhhhhhhcCc
Q psy1356 32 LVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~~ 53 (69)
+.++|++|+|||+|+.-..+-.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 5789999999999998776543
No 310
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.23 E-value=0.012 Score=34.89 Aligned_cols=24 Identities=21% Similarity=0.552 Sum_probs=19.9
Q ss_pred eeeeEEEECCCCCChhhhhhhhhc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..+.|++.|..|+|||++...+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999887654
No 311
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.23 E-value=0.0085 Score=35.93 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=18.8
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
++|++.|..|+|||++...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999887654
No 312
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.22 E-value=0.0096 Score=34.67 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.7
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|++.|.+|+|||++...+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999887653
No 313
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.22 E-value=0.0092 Score=36.96 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.6
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
--+++.|++|+|||+|+..+..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999987653
No 314
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.22 E-value=0.0099 Score=39.33 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=17.9
Q ss_pred EEEECCCCCChhhhhhhhhcC
Q psy1356 32 LVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~ 52 (69)
+.++|++|+|||+|+.-..+-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHHCC
Confidence 578999999999999877654
No 315
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.20 E-value=0.0093 Score=38.24 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+....+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3679999999999999877654
No 316
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.19 E-value=0.011 Score=34.36 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhhhhhhhh
Q psy1356 30 YKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~ 50 (69)
..|+++|.+|+|||++...+.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 468899999999999998765
No 317
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.19 E-value=0.01 Score=39.40 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=17.9
Q ss_pred EEEECCCCCChhhhhhhhhcC
Q psy1356 32 LVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~ 52 (69)
+.++|++|+|||+|+.-..+-
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCChHHHHHHHHHcC
Confidence 568999999999999876654
No 318
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.18 E-value=0.0096 Score=38.31 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.++++|++|+|||+|+..+..
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999987654
No 319
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.18 E-value=0.012 Score=33.68 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=18.6
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
++|++.|..|+|||++...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999877654
No 320
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.18 E-value=0.0093 Score=37.83 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.1
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+++.|++|+|||+|+..+..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 588999999999999987654
No 321
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.17 E-value=0.0034 Score=37.37 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.+.++|.+|+|||+|+..++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999876553
No 322
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.17 E-value=0.0098 Score=38.41 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=18.9
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-.-+.++|.+|+|||+|+.....
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHh
Confidence 45678999999999999986554
No 323
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.14 E-value=0.01 Score=38.19 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=18.2
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
--+.++|.+|+|||+++..+..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3577999999999999987554
No 324
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.13 E-value=0.01 Score=37.89 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=18.8
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
-+++.|++|+|||+|+..+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999877643
No 325
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.13 E-value=0.013 Score=34.45 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=18.8
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|++.|..|+|||++...+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999887654
No 326
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.11 E-value=0.01 Score=38.63 Aligned_cols=23 Identities=17% Similarity=0.518 Sum_probs=18.9
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
---+.++|.+|+|||+++..+..
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999987654
No 327
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.09 E-value=0.011 Score=38.36 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.3
Q ss_pred eeeEEEECCCCCChhhhhhhhh
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~ 50 (69)
-..+.++|.+|+|||+|+..++
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3568899999999999999876
No 328
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.08 E-value=0.012 Score=33.36 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=18.8
Q ss_pred eeEEEECCCCCChhhhhhhhhcC
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.-|++.|++|+|||.+...+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999988766543
No 329
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.07 E-value=0.011 Score=36.67 Aligned_cols=22 Identities=23% Similarity=0.638 Sum_probs=18.3
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
--+++.|++|+|||+++..+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999876553
No 330
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.06 E-value=0.0099 Score=37.12 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.2
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-++++|.+|+|||+|+.+++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 467889999999999988774
No 331
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.05 E-value=0.0073 Score=39.10 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.+.++|.+|+|||+|+.-...
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 467999999999999987654
No 332
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.04 E-value=0.014 Score=35.57 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=19.3
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
...|+++|..|+|||++...+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999998877653
No 333
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.03 E-value=0.015 Score=36.54 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.3
Q ss_pred eeeeEEEECCCCCChhhhhhhhh
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~ 50 (69)
..++|++.|.+|||||+++.+..
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHH
Confidence 36899999999999999976543
No 334
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.03 E-value=0.011 Score=37.21 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=17.6
Q ss_pred EEEECCCCCChhhhhhhhhc
Q psy1356 32 LVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~ 51 (69)
++++|++|+|||+|+.....
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999999887654
No 335
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.02 E-value=0.011 Score=34.33 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=15.7
Q ss_pred eEEEECCCCCChhhhhhhh
Q psy1356 31 KLVLLGESAVGKSSLVLRF 49 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~ 49 (69)
-.+++|++|+|||+|+.-.
T Consensus 28 ~~~i~G~NGsGKStll~ai 46 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAI 46 (182)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHH
Confidence 3578899999999998653
No 336
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.00 E-value=0.011 Score=36.80 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=18.5
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
--+++.|++|+|||+|+..+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4688999999999999987654
No 337
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.99 E-value=0.009 Score=41.73 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=21.1
Q ss_pred eeEEEECCCCCChhhhhhhhhcCccC
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRGQFH 55 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~~f~ 55 (69)
-.+.++|++|+|||+|+..+++-.++
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCC
Confidence 35899999999999999988876544
No 338
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=94.98 E-value=0.011 Score=42.80 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.7
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcC
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
....+|+++|..++|||+|+.+++..
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999998753
No 339
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.97 E-value=0.014 Score=34.75 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=19.5
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
...+.++|.+|+|||+++..+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999987765
No 340
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.97 E-value=0.014 Score=34.32 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=19.0
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|+++|..|+|||++...+..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999887654
No 341
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.97 E-value=0.013 Score=38.01 Aligned_cols=23 Identities=13% Similarity=0.325 Sum_probs=19.3
Q ss_pred eEEEECCCCCChhhhhhhhhcCc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
.++++|.+|+|||+|+..+..-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999998776543
No 342
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=94.97 E-value=0.013 Score=39.34 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.5
Q ss_pred cceeeeEEEECCCCCChhhhhhh
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLR 48 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~ 48 (69)
....+|+++||...+|||+++.|
T Consensus 37 ~~~~~klLLLG~geSGKSTi~KQ 59 (402)
T 1azs_C 37 YRATHRLLLLGAGESGKSTIVKQ 59 (402)
T ss_dssp CTTEEEEEEEESTTSSHHHHHHH
T ss_pred hhccceEEEecCCCCchhhHHHH
Confidence 44679999999999999999986
No 343
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.97 E-value=0.02 Score=40.28 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.9
Q ss_pred eeeeEEEECCCCCChhhhhhhhhcCc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
....|.++|.+++|||+|+.++++..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 45788999999999999999998765
No 344
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.97 E-value=0.014 Score=35.06 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=18.9
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
+.|+++|..|+|||++...+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999887654
No 345
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.95 E-value=0.011 Score=37.04 Aligned_cols=21 Identities=19% Similarity=0.550 Sum_probs=17.5
Q ss_pred eeEEEECCCCCChhhhhhhhh
Q psy1356 30 YKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~ 50 (69)
.-+++.|++|+|||+|+..+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458999999999999997443
No 346
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.94 E-value=0.013 Score=38.90 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=18.1
Q ss_pred EEEECCCCCChhhhhhhhhcCc
Q psy1356 32 LVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~~ 53 (69)
+.++|++|+|||+|+.....-.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHhcCC
Confidence 4689999999999998776543
No 347
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.94 E-value=0.013 Score=35.45 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.1
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|+++|..|+|||++...+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999987753
No 348
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.91 E-value=0.018 Score=33.36 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=18.0
Q ss_pred eeEEEECCCCCChhhhhhhhh
Q psy1356 30 YKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~ 50 (69)
..|++.|..|+|||++...+.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999987664
No 349
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.91 E-value=0.013 Score=36.28 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=19.1
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..-+++.|++|+|||+|+..+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34688999999999999987654
No 350
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.87 E-value=0.011 Score=37.68 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.8
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
--+++.|++|+|||+|+..+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999987664
No 351
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.86 E-value=0.012 Score=39.33 Aligned_cols=21 Identities=43% Similarity=0.751 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.+.++|++|+|||+|+.-..+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 467999999999999987664
No 352
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.85 E-value=0.016 Score=34.05 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=19.6
Q ss_pred eeEEEECCCCCChhhhhhhhhcC
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
..|++.|..|+|||++...+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999877653
No 353
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.84 E-value=0.0035 Score=40.69 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=19.0
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|.+|+|||+|+..+...
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 6789999999999999988754
No 354
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.84 E-value=0.017 Score=35.05 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=18.5
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
+.|++.|..|+|||++...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999887653
No 355
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.83 E-value=0.016 Score=33.81 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.2
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.|++.|..|+|||++...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999987664
No 356
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.82 E-value=0.024 Score=38.71 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=18.7
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
--|.|+|.+|+|||+|+.++..
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999999998774
No 357
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.82 E-value=0.014 Score=36.24 Aligned_cols=20 Identities=15% Similarity=0.464 Sum_probs=17.0
Q ss_pred eEEEECCCCCChhhhhhhhh
Q psy1356 31 KLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~ 50 (69)
-++++|.+|+|||+|...+.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 36889999999999988764
No 358
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.80 E-value=0.014 Score=37.17 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=17.9
Q ss_pred EEEECCCCCChhhhhhhhhc
Q psy1356 32 LVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~ 51 (69)
+++.|++|+|||+++..+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999987655
No 359
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.79 E-value=0.012 Score=35.37 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=18.8
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|+++|.+|+|||++...+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999887653
No 360
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.77 E-value=0.017 Score=34.50 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=18.2
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..+.++|.+|+|||+|+.+++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999987654
No 361
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.76 E-value=0.017 Score=35.20 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=19.2
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-.-+.+.|..|+|||+++..+..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35678999999999999987664
No 362
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.74 E-value=0.011 Score=38.89 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=18.9
Q ss_pred eEEEECCCCCChhhhhhhhhcCc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
.+.++|++|+|||+|+.-..+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 35789999999999998776543
No 363
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.74 E-value=0.018 Score=35.33 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=18.7
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..+.++|.+|+|||+|+..+..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999987654
No 364
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.73 E-value=0.018 Score=36.80 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=18.8
Q ss_pred eeeeEEEECCCCCChhhhhhhhh
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~ 50 (69)
..+.|.++|.+|+|||+|+..+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34678899999999999987543
No 365
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.72 E-value=0.017 Score=34.66 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
-+++.|++|+|||.|+.+++.+
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4678899999999999987643
No 366
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.72 E-value=0.013 Score=33.27 Aligned_cols=22 Identities=18% Similarity=0.233 Sum_probs=18.1
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.-|++.|++|+|||.+...+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 4589999999999998876554
No 367
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.68 E-value=0.021 Score=35.37 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=20.3
Q ss_pred eeEEEECCCCCChhhhhhhhhcCc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
..++++|.+|+|||+|...+....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999887643
No 368
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.68 E-value=0.016 Score=36.79 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.3
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+++.|++|+|||+|+..+..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 589999999999999987653
No 369
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.65 E-value=0.016 Score=40.17 Aligned_cols=22 Identities=23% Similarity=0.634 Sum_probs=18.3
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..+.++|.+|+|||+|+..+..
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 3578999999999999987654
No 370
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.65 E-value=0.018 Score=33.67 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=18.8
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
...++++|.+|+|||++...+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35688999999999999876543
No 371
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.64 E-value=0.016 Score=38.30 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=18.2
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-.+.++|.+|+|||+++..+..
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 3578999999999999986554
No 372
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.63 E-value=0.018 Score=35.67 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=18.7
Q ss_pred eeEEEECCCCCChhhhhhhhh
Q psy1356 30 YKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~ 50 (69)
..|.++|.+|+|||+++..+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999998776
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.61 E-value=0.019 Score=33.25 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=18.1
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.|++.|..|+|||++...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999887654
No 374
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.61 E-value=0.018 Score=34.36 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=18.9
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
...+.++|.+|+|||+++..+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999876653
No 375
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.59 E-value=0.019 Score=32.84 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|++.|..|+|||++...+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999877654
No 376
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.59 E-value=0.023 Score=35.08 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=18.4
Q ss_pred eeeeE-EEECCCCCChhhhhhhhhc
Q psy1356 28 CQYKL-VLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 28 ~~~kv-~~lG~~~vGKtsl~~~~~~ 51 (69)
...|| +++|.+|+||++...+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34454 5789999999998877664
No 377
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.57 E-value=0.018 Score=35.97 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
--++++|++|+|||+++..+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3588999999999999876654
No 378
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.56 E-value=0.019 Score=34.61 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=19.2
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.++|+++|..|+|||++...+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999998877653
No 379
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.56 E-value=0.016 Score=38.00 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=18.9
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
++.++|.+|+|||+|+...+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6779999999999998877654
No 380
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.56 E-value=0.015 Score=37.22 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.3
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+++.|++|+|||+|+..+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999987764
No 381
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.55 E-value=0.02 Score=38.89 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
-++|.|.+|+|||+|+..+...
T Consensus 149 ~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 149 WVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEcCCCCCHHHHHHHHHhc
Confidence 4679999999999999888643
No 382
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.53 E-value=0.015 Score=37.21 Aligned_cols=21 Identities=14% Similarity=0.545 Sum_probs=18.3
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+++.|++|+|||+|+..+..
T Consensus 72 ~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999987664
No 383
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.52 E-value=0.018 Score=33.64 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=19.1
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
...|++.|..|+|||++...+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999877654
No 384
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.51 E-value=0.018 Score=38.83 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-.++++|++|+|||+|+..+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 4679999999999999876554
No 385
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=94.50 E-value=0.025 Score=40.20 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=22.1
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhc
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
....+|+++|..++|||+|+.+++.
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999864
No 386
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.48 E-value=0.019 Score=36.34 Aligned_cols=20 Identities=25% Similarity=0.617 Sum_probs=17.7
Q ss_pred EEEECCCCCChhhhhhhhhc
Q psy1356 32 LVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~ 51 (69)
+++.|++|+|||+++..+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999887654
No 387
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.48 E-value=0.02 Score=35.29 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.0
Q ss_pred eeEEEECCCCCChhhhhhhhhcC
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.-+++.|++|+|||.|+..+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 46889999999999988776543
No 388
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.46 E-value=0.019 Score=37.73 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=20.8
Q ss_pred eeeEEEECCCCCChhhhhhhhhcC
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
..+++++|.+++|||+|+..++..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhh
Confidence 357999999999999999988754
No 389
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.45 E-value=0.019 Score=37.84 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.++++|.+|+|||+|+..++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 688999999999999986543
No 390
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.45 E-value=0.022 Score=32.88 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=18.6
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|++.|..|+|||++...+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999877653
No 391
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.45 E-value=0.018 Score=37.90 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.++++|.+|+|||+|+..++.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999986554
No 392
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.016 Score=39.44 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.2
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.+.++|.+|+|||+|+.-+++
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 688999999999999986554
No 393
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.43 E-value=0.022 Score=33.36 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=20.3
Q ss_pred eeeEEEECCCCCChhhhhhhhhcC
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.|.+.|..|+|||++...+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357899999999999999887654
No 394
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.42 E-value=0.021 Score=33.26 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=18.6
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|++.|..|+|||++...+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999877653
No 395
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.42 E-value=0.021 Score=33.22 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|+++|.+|+|||++...+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999877653
No 396
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.42 E-value=0.019 Score=33.94 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=18.8
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|++.|..|+|||++...+..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999887653
No 397
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=94.41 E-value=0.017 Score=40.53 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=17.6
Q ss_pred eeeeEEEECCCCCChhhhhhhhhc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
...+++++|..++|||+|+.+++.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~ 26 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQ 26 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999875
No 398
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.40 E-value=0.019 Score=36.30 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+++.|++|+|||+|+..+..
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHH
Confidence 488999999999999876654
No 399
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.40 E-value=0.019 Score=36.69 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=18.2
Q ss_pred EEEECCCCCChhhhhhhhhcC
Q psy1356 32 LVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~ 52 (69)
+++.|++|+|||+++..+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999876653
No 400
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=94.40 E-value=0.023 Score=39.94 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=19.7
Q ss_pred eeeeEEEECCCCCChhhhhhhhhc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
...+++++|..++|||+|+.+++.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~ 28 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLE 28 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 467999999999999999999875
No 401
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.39 E-value=0.018 Score=38.89 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=18.5
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
++.++|++|+|||+|+......
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6779999999999998776653
No 402
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.39 E-value=0.024 Score=36.96 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=18.6
Q ss_pred eeeEEEECCCCCChhhhhhhhh
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~ 50 (69)
.+-+.++|.+|+|||+|+..+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4668899999999999987654
No 403
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.36 E-value=0.015 Score=36.46 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.-+++.|++|+|||+|+..+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999987643
No 404
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.36 E-value=0.0089 Score=39.36 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=18.0
Q ss_pred EEEECCCCCChhhhhhhhhcC
Q psy1356 32 LVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~ 52 (69)
+.++|++|+|||+|+.-..+-
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 568999999999999877654
No 405
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.36 E-value=0.018 Score=36.81 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.8
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..+.++|.+|+|||+|+..+..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999987654
No 406
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.32 E-value=0.018 Score=35.63 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=19.1
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
...++++|.+|+|||++...+..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999877543
No 407
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.32 E-value=0.018 Score=36.47 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=17.2
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.-+++.|++|+|||+|+.....
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3466779999999999876553
No 408
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.31 E-value=0.023 Score=36.40 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=18.2
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-.+++.|++|+|||.|+..+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999876543
No 409
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.31 E-value=0.022 Score=35.79 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.6
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-.|+++|.+|+|||++...+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999876653
No 410
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=94.26 E-value=0.022 Score=41.22 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=25.1
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcCcc
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRGQF 54 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~~f 54 (69)
....+|+++|+.++|||||+..+++..|
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 4567999999999999999999998776
No 411
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.24 E-value=0.03 Score=32.50 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|++.|..|+|||++...+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999877654
No 412
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.24 E-value=0.023 Score=36.82 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..+++.|++|+|||+++..+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999876553
No 413
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.24 E-value=0.023 Score=33.52 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=18.9
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|++.|..|+|||++...+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999887653
No 414
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.22 E-value=0.022 Score=39.13 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.++++|.+|+|||+++..++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999876653
No 415
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.20 E-value=0.02 Score=38.27 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhhhhhhhh
Q psy1356 31 KLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~ 50 (69)
-+.++|++|+|||+|+.+++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 46788999999999999875
No 416
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.20 E-value=0.02 Score=36.77 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=18.9
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
-++++|.+|+|||+|+..+...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4578999999999999988854
No 417
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.20 E-value=0.023 Score=34.68 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.5
Q ss_pred eeEEEECCCCCChhhhhhhhhcC
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.-+++.|++|+|||+|...+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 35789999999999999887754
No 418
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.18 E-value=0.035 Score=38.30 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=19.2
Q ss_pred eEEEECCCCCChhhhhhhhhcCc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
.+.++|++|+|||+|+.-..+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999998877543
No 419
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.17 E-value=0.0065 Score=36.01 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=17.2
Q ss_pred eEEEECCCCCChhhhhhhhh
Q psy1356 31 KLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~ 50 (69)
.|++.|.+|+|||+++..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999998764
No 420
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.16 E-value=0.024 Score=32.73 Aligned_cols=21 Identities=19% Similarity=0.157 Sum_probs=14.2
Q ss_pred eeEEEECCCCCChhhhhhhhh
Q psy1356 30 YKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~ 50 (69)
..|++.|..|+|||++...+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999988765
No 421
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.16 E-value=0.021 Score=38.99 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=17.4
Q ss_pred eEEEECCCCCChhhhhhhhh
Q psy1356 31 KLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~ 50 (69)
-+.++|++|+|||+|+..|+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999963
No 422
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.15 E-value=0.017 Score=36.60 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+++.|++|+|||.|+..+..
T Consensus 47 ~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 489999999999999877654
No 423
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.11 E-value=0.032 Score=38.52 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
++.++|++|+|||+|+.-..+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5679999999999999877654
No 424
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.10 E-value=0.024 Score=36.14 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=18.5
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-.+++.|++|+|||.|+..+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999987653
No 425
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.06 E-value=0.034 Score=38.48 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=18.6
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
++.++|++|+|||+|+.-..+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999877654
No 426
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.06 E-value=0.018 Score=37.05 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=16.6
Q ss_pred EEE--ECCCCCChhhhhhhhhc
Q psy1356 32 LVL--LGESAVGKSSLVLRFVR 51 (69)
Q Consensus 32 v~~--lG~~~vGKtsl~~~~~~ 51 (69)
+++ .|++|+|||+|+..+..
T Consensus 53 ~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 53 MIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp EEEECTTCCSSSHHHHHHHHHH
T ss_pred EEEeCcCcCCCCHHHHHHHHHH
Confidence 455 69999999999987764
No 427
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.04 E-value=0.028 Score=36.42 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.2
Q ss_pred eeeEEEECCCCCChhhhhhhhh
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~ 50 (69)
...+.++|.+|+|||+|+..++
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 4678899999999999998875
No 428
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.02 E-value=0.031 Score=38.63 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=18.8
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
++.++|++|+|||+|+....+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5679999999999999877654
No 429
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.01 E-value=0.024 Score=37.02 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
-+.++|++|+|||+|+.+++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999987753
No 430
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.01 E-value=0.03 Score=34.75 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=18.6
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|++.|.+|+|||++...+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999887653
No 431
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.99 E-value=0.029 Score=33.57 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=17.7
Q ss_pred eeEEEECCCCCChhhhhhhhh
Q psy1356 30 YKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~ 50 (69)
..|+++|..|+|||++...+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 467889999999999987654
No 432
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.96 E-value=0.027 Score=36.16 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.6
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
--+++.|++|+|||.|+..+..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 3588999999999999987664
No 433
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.92 E-value=0.021 Score=37.54 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=20.8
Q ss_pred eeeEEEECCCCCChhhhhhhhhcC
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
..+++++|.+++|||+|+..+...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhh
Confidence 357999999999999999988764
No 434
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.90 E-value=0.033 Score=36.76 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=18.3
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-|+|+|..|+|||+|...+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999887764
No 435
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.90 E-value=0.031 Score=36.26 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=18.5
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
--+++.|++|+|||+|+..+..
T Consensus 118 ~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999877653
No 436
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.89 E-value=0.038 Score=32.99 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.1
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
+.|++.|..|+|||++...+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999887764
No 437
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.89 E-value=0.029 Score=36.68 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=18.8
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.-+++.|++|+|||+|+..+..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999987653
No 438
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=93.88 E-value=0.02 Score=38.14 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=23.3
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhcCc
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
..-...|.++|-++||||+|+..++...
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~ 96 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTE 96 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBC
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCC
Confidence 3345789999999999999999988643
No 439
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.87 E-value=0.031 Score=35.61 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+++.|+.|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999987654
No 440
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.87 E-value=0.011 Score=36.41 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=17.3
Q ss_pred EEEECCCCCChhhhhhhhhc
Q psy1356 32 LVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~ 51 (69)
+++.|++|+|||+|+..+..
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78899999999999977654
No 441
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.83 E-value=0.032 Score=34.89 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=18.9
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..|++.|.+|+|||++..++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999988765
No 442
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.82 E-value=0.029 Score=37.60 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+++.|++|+|||+|+..+..
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999976654
No 443
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.76 E-value=0.044 Score=38.06 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=18.6
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
++.++|++|+|||+|+.-..+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999876653
No 444
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.75 E-value=0.041 Score=38.04 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=18.2
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+....+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 4679999999999999876543
No 445
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=93.74 E-value=0.034 Score=42.32 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=22.8
Q ss_pred ceeeeEEEECCCCCChhhhhhhhhcC
Q psy1356 27 ICQYKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 27 ~~~~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
...++|+++|..++|||+|+.+++..
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 35689999999999999999998763
No 446
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.73 E-value=0.036 Score=35.52 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=18.2
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+++.|.+|+|||+|+.+++.
T Consensus 70 l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 467889999999999998774
No 447
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.70 E-value=0.03 Score=35.85 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=17.6
Q ss_pred eeEEEECCCCCChhhhhhhhh
Q psy1356 30 YKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~ 50 (69)
-.++++|.+|+|||+++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357889999999999987655
No 448
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.68 E-value=0.02 Score=36.37 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.1
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.+++.|++|+|||.|+..+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999876653
No 449
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.66 E-value=0.033 Score=38.27 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=17.3
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.+.++|++|+|||+|+...+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 467899999999999876554
No 450
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.64 E-value=0.033 Score=36.17 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=17.9
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+++.|++|+|||.|+..+..
T Consensus 86 ~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999876654
No 451
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.62 E-value=0.037 Score=34.49 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=18.6
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+++.|+.|+|||+++..+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3899999999999999876643
No 452
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.61 E-value=0.034 Score=37.53 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.1
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+++.|++|+|||+|+..+..
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999886653
No 453
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.59 E-value=0.046 Score=33.63 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.8
Q ss_pred eeeeEEEECCCCCChhhhhhhhhc
Q psy1356 28 CQYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 28 ~~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
..+.|.+.|.+|+|||++...+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999876654
No 454
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.57 E-value=0.034 Score=37.37 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-++++|.+|+|||+|+..++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999987654
No 455
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.55 E-value=0.041 Score=36.61 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.8
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.-|+++|.+|+|||++..++..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999988764
No 456
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.54 E-value=0.037 Score=34.41 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=18.1
Q ss_pred EEEECCCCCChhhhhhhhhcC
Q psy1356 32 LVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~ 52 (69)
+++.|+.|+|||+++..+...
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 899999999999998876543
No 457
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.53 E-value=0.034 Score=36.29 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=19.7
Q ss_pred eeEEEECCCCCChhhhhhhhhcC
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.-+++.|++|+|||+++..++..
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc
Confidence 35889999999999999888764
No 458
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.50 E-value=0.041 Score=35.48 Aligned_cols=22 Identities=14% Similarity=0.475 Sum_probs=18.0
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
--++++|.+|+|||+++..+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 3577999999999999887653
No 459
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.45 E-value=0.048 Score=33.46 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=19.1
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-..|++.|..|+|||+++.++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35688999999999999887654
No 460
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.44 E-value=0.042 Score=36.14 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-|+++|.+|+|||+|...+..
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 367899999999999988764
No 461
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.41 E-value=0.032 Score=38.01 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.0
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
-+.++|++|+|||+|+..++..
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4678899999999999988754
No 462
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.40 E-value=0.04 Score=34.20 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=17.6
Q ss_pred EEEECCCCCChhhhhhhhhc
Q psy1356 32 LVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~ 51 (69)
+++.|+.|+|||+++..+..
T Consensus 41 ~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHH
Confidence 89999999999999877654
No 463
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.38 E-value=0.041 Score=35.52 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=18.6
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
...+++.|++|+|||++...+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999998876543
No 464
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.35 E-value=0.05 Score=33.92 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=19.1
Q ss_pred eeeEEEECCCCCChhhhhhhhh
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~ 50 (69)
.+.+.+.|.+|+|||++...+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999988765
No 465
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.31 E-value=0.054 Score=32.93 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=20.2
Q ss_pred cceeeeEEEECCCCCChhhhhhhhhc
Q psy1356 26 KICQYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 26 ~~~~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
+.....|.++|..|+|||++...+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33456799999999999998876653
No 466
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.28 E-value=0.042 Score=38.11 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=18.4
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
++.++|++|+|||+|+....+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5679999999999999876653
No 467
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.24 E-value=0.05 Score=31.15 Aligned_cols=23 Identities=39% Similarity=0.385 Sum_probs=18.3
Q ss_pred eeeEEEECCCCCChhhhhhhhhc
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.-.|++.|..|+|||++...+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999998877653
No 468
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.23 E-value=0.041 Score=37.87 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=16.9
Q ss_pred eEEEECCCCCChhhhhhhhh
Q psy1356 31 KLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~ 50 (69)
-++++|++|+|||+|+..+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia 129 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIA 129 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999987644
No 469
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.17 E-value=0.061 Score=37.16 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=18.5
Q ss_pred EEEECCCCCChhhhhhhhhcCc
Q psy1356 32 LVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~~ 53 (69)
+.++|++|+|||+|+.-..+..
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 5689999999999998877643
No 470
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.15 E-value=0.044 Score=37.29 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
--+++.|++|+|||+++..+..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999987654
No 471
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.14 E-value=0.044 Score=38.68 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-.++++|++|+|||+++..+..
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999876553
No 472
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.13 E-value=0.067 Score=37.52 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=19.1
Q ss_pred eEEEECCCCCChhhhhhhhhcCc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
.+.++|++|+|||+|+.-..+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 46799999999999998776543
No 473
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.08 E-value=0.058 Score=31.02 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=14.5
Q ss_pred EEEECCCCCChhhhhhh
Q psy1356 32 LVLLGESAVGKSSLVLR 48 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~ 48 (69)
.+++|+.|+|||+|+.-
T Consensus 26 ~~I~G~NGsGKStil~A 42 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDA 42 (149)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 46789999999999864
No 474
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.06 E-value=0.05 Score=36.43 Aligned_cols=22 Identities=18% Similarity=0.486 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
-+++.|.+|+|||+|+.+++..
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999987754
No 475
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.04 E-value=0.043 Score=36.26 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=17.6
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+.++|++|+|||+|+.+++.
T Consensus 63 i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367889999999999988764
No 476
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.04 E-value=0.049 Score=35.64 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.|+++|.+|+|||+|...+..
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999876553
No 477
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.04 E-value=0.065 Score=37.63 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=18.6
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.+.++|++|+|||+|+.-..+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 4678999999999999877654
No 478
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.03 E-value=0.083 Score=33.27 Aligned_cols=22 Identities=45% Similarity=0.501 Sum_probs=19.3
Q ss_pred eeeEEEECCCCCChhhhhhhhh
Q psy1356 29 QYKLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 29 ~~kv~~lG~~~vGKtsl~~~~~ 50 (69)
.+.|++.|..|+|||++...+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999988765
No 479
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.01 E-value=0.048 Score=38.63 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-.++++|++|+|||+++..+..
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999876553
No 480
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.90 E-value=0.053 Score=35.55 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=17.8
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-++++|.+|+|||+|...+..
T Consensus 12 ~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 467899999999999987764
No 481
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.88 E-value=0.058 Score=37.10 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=18.7
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+++++|.+|+|||+|+..+..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHh
Confidence 3688999999999999986654
No 482
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.83 E-value=0.053 Score=35.72 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=18.1
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.-|+++|.+|+|||+|...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3578999999999999876553
No 483
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.80 E-value=0.06 Score=34.31 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=18.1
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.-|++.|++|+|||.++..+..
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHHH
Confidence 4689999999999998876543
No 484
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.79 E-value=0.059 Score=34.92 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=18.7
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
-+++.|++|+|||+|+.+++..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999987753
No 485
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.75 E-value=0.078 Score=36.64 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=18.6
Q ss_pred EEEECCCCCChhhhhhhhhcCc
Q psy1356 32 LVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~~ 53 (69)
+.++|.+|+|||+|+.-.++-.
T Consensus 297 ~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5789999999999998877643
No 486
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.75 E-value=0.05 Score=32.83 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.9
Q ss_pred EEEECCCCCChhhhhhhhhcC
Q psy1356 32 LVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~ 52 (69)
++++|.+++|||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 688999999999999998865
No 487
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.74 E-value=0.055 Score=36.23 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.5
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
--+++.|++|+|||.|+..+..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999987664
No 488
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.70 E-value=0.086 Score=36.32 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=19.0
Q ss_pred eEEEECCCCCChhhhhhhhhcCc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~~ 53 (69)
.+.++|.+|+|||+|+.-.++..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35699999999999998877643
No 489
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.69 E-value=0.057 Score=35.86 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=17.3
Q ss_pred eEEEECCCCCChhhhhhhhh
Q psy1356 31 KLVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~ 50 (69)
.++++|.+|+|||+|+....
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999987655
No 490
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.64 E-value=0.063 Score=35.40 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=18.4
Q ss_pred EEEECCCCCChhhhhhhhhcC
Q psy1356 32 LVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~ 52 (69)
+++.|++|+|||+|..++...
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 578999999999999988753
No 491
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.56 E-value=0.06 Score=37.34 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=18.9
Q ss_pred eEEEECCCCCChhhhhhhhhcC
Q psy1356 31 KLVLLGESAVGKSSLVLRFVRG 52 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~~ 52 (69)
.++++|++|+|||+|+..+...
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHhcc
Confidence 6899999999999999876653
No 492
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.53 E-value=0.067 Score=40.42 Aligned_cols=21 Identities=43% Similarity=0.618 Sum_probs=18.0
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
|+.++|.+|+|||+|+.-+..
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 678999999999999986654
No 493
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.48 E-value=0.057 Score=35.31 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=17.6
Q ss_pred EEEECCCCCChhhhhhhhhc
Q psy1356 32 LVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~ 51 (69)
+++.|++|+|||+|+.+++.
T Consensus 64 v~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77889999999999988764
No 494
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.46 E-value=0.064 Score=37.61 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=15.3
Q ss_pred eEEEECCCCCChhhhhhh
Q psy1356 31 KLVLLGESAVGKSSLVLR 48 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~ 48 (69)
.+.++|++|+|||+|+..
T Consensus 350 ~vaIiGpnGsGKSTLl~~ 367 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNE 367 (670)
T ss_dssp EEEEECSTTSSHHHHHTT
T ss_pred EEEEEeeCCCCHHHHHHH
Confidence 357999999999999853
No 495
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.45 E-value=0.058 Score=34.56 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.3
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+++.|++|+|||+|+.+++.
T Consensus 109 i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHhHHHHHHHH
Confidence 467889999999999998874
No 496
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.42 E-value=0.097 Score=36.69 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=18.7
Q ss_pred EEEECCCCCChhhhhhhhhcCc
Q psy1356 32 LVLLGESAVGKSSLVLRFVRGQ 53 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~~~~ 53 (69)
+.++|.+|+|||+|+.-..+..
T Consensus 385 ~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 385 IGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5799999999999998877643
No 497
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.41 E-value=0.063 Score=31.90 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=15.7
Q ss_pred EEEECCCCCChhhhhhhhh
Q psy1356 32 LVLLGESAVGKSSLVLRFV 50 (69)
Q Consensus 32 v~~lG~~~vGKtsl~~~~~ 50 (69)
+++.|+.++|||+++.+..
T Consensus 6 ~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5678999999999986554
No 498
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.40 E-value=0.041 Score=39.61 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=18.1
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
.++++|++|+|||+|+..+..
T Consensus 193 ~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHH
Confidence 479999999999999987654
No 499
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.38 E-value=0.076 Score=36.48 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=18.4
Q ss_pred eeEEEECCCCCChhhhhhhhhc
Q psy1356 30 YKLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 30 ~kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-.+++.|++|+|||.|+..+..
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGG
T ss_pred CeeEeecCchHHHHHHHHHHHH
Confidence 3689999999999999876653
No 500
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.34 E-value=0.062 Score=34.17 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=18.4
Q ss_pred eEEEECCCCCChhhhhhhhhc
Q psy1356 31 KLVLLGESAVGKSSLVLRFVR 51 (69)
Q Consensus 31 kv~~lG~~~vGKtsl~~~~~~ 51 (69)
-+++.|++|+|||+|+.+++.
T Consensus 100 i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999998874
Done!